Wall clock time and date at job start Tue Mar 31 2020 10:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00193 * 2 1 4 4 H 1.48499 * 109.47090 * 270.00474 * 3 2 1 5 5 H 1.48500 * 109.47379 * 30.00315 * 3 2 1 6 6 H 1.48503 * 109.47260 * 150.00300 * 3 2 1 7 7 C 1.37878 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00313 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99823 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46648 * 55.00868 * 11 10 9 13 13 N 1.46898 * 109.47252 * 295.00461 * 11 10 9 14 14 C 1.50704 * 109.46859 * 175.00102 * 11 10 9 15 15 O 1.21288 * 119.99786 * 100.00509 * 14 11 10 16 16 N 1.34776 * 120.00363 * 279.99982 * 14 11 10 17 17 C 1.39941 * 120.00347 * 185.27880 * 16 14 11 18 18 C 1.38999 * 119.99937 * 213.38359 * 17 16 14 19 19 C 1.38212 * 120.22125 * 179.97438 * 18 17 16 20 20 C 1.38034 * 120.21797 * 359.78695 * 19 18 17 21 21 C 1.39571 * 119.99352 * 0.46494 * 20 19 18 22 22 C 1.47843 * 120.10554 * 179.79105 * 21 20 19 23 23 N 1.31211 * 125.72539 * 359.72139 * 22 21 20 24 24 C 1.34160 * 108.64444 * 180.02562 * 23 22 21 25 25 C 1.34550 * 107.84213 * 359.97438 * 24 23 22 26 26 O 1.34430 * 125.72367 * 179.41601 * 22 21 20 27 27 C 1.38593 * 120.00023 * 33.35443 * 17 16 14 28 28 H 0.97002 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46872 * 60.00174 * 9 7 2 30 30 H 1.08996 * 109.46941 * 300.00222 * 9 7 2 31 31 H 1.09007 * 109.47168 * 60.00154 * 10 9 7 32 32 H 1.09000 * 109.47555 * 300.00610 * 10 9 7 33 33 H 1.00903 * 111.00133 * 299.99724 * 13 11 10 34 34 H 1.00897 * 111.00111 * 63.95197 * 13 11 10 35 35 H 0.97001 * 119.99229 * 5.27714 * 16 14 11 36 36 H 1.07999 * 119.89020 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.89029 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.99782 * 180.25328 * 20 19 18 39 39 H 1.08007 * 126.08292 * 179.97438 * 24 23 22 40 40 H 1.07999 * 126.36662 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.10929 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 1 5.9154 -2.0471 0.8392 13 7 6.0402 -2.0518 -1.2580 14 6 6.0538 -4.0522 0.1217 15 8 6.4272 -4.6517 -0.8644 16 7 6.0883 -4.6519 1.3282 17 6 6.6564 -5.9238 1.4614 18 6 6.1427 -6.8205 2.3910 19 6 6.6999 -8.0781 2.5261 20 6 7.7674 -8.4535 1.7357 21 6 8.2938 -7.5584 0.8030 22 6 9.4401 -7.9563 -0.0416 23 7 10.0519 -9.1165 -0.0058 24 6 11.0400 -9.1085 -0.9132 25 6 11.0313 -7.9085 -1.5217 26 8 10.0268 -7.1922 -0.9792 27 6 7.7308 -6.2897 0.6661 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6806 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.6578 -3.1507 -0.8908 32 1 3.6584 -3.1504 0.8892 33 1 5.7160 -2.5810 -2.0536 34 1 5.7707 -1.0825 -1.3344 35 1 5.7193 -4.2017 2.1042 36 1 5.3053 -6.5335 3.0098 37 1 6.2962 -8.7707 3.2498 38 1 8.1974 -9.4386 1.8414 39 1 11.7214 -9.9209 -1.1189 40 1 11.7016 -7.5817 -2.3029 41 1 8.1314 -5.5943 -0.0568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:33 Heat of formation + Delta-G solvation = -15.065635 kcal Electronic energy + Delta-G solvation = -24819.079547 eV Core-core repulsion = 21085.277667 eV Total energy + Delta-G solvation = -3733.801880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.30548 -41.71366 -39.75091 -37.22646 -36.13309 -35.71021 -34.82111 -33.15802 -32.09689 -31.11500 -29.94044 -28.37149 -25.81655 -25.03527 -24.07955 -23.06817 -22.26607 -21.93769 -21.13933 -19.47455 -19.09257 -18.38795 -17.84789 -17.67456 -17.22813 -16.54390 -16.38909 -16.17215 -16.11192 -15.75032 -15.46988 -15.14109 -14.84617 -14.67907 -14.55335 -14.30476 -14.11680 -13.94486 -13.59446 -13.09655 -12.85447 -12.70696 -12.60878 -12.50137 -12.07240 -11.91880 -11.72000 -11.68006 -11.59495 -11.40326 -10.85724 -10.76456 -10.64306 -9.71854 -9.47724 -9.11436 -8.29299 -6.34792 -0.43044 0.22439 0.80157 1.39347 1.40467 1.47319 1.51776 1.68578 1.73700 1.91191 2.36612 2.76868 2.92358 3.06509 3.61315 3.67925 3.87194 4.00250 4.03352 4.05990 4.14367 4.14844 4.20315 4.40395 4.43339 4.55918 4.63600 4.71275 4.85657 4.89889 4.94700 5.13348 5.24738 5.29495 5.36203 5.39001 5.42962 5.47423 5.63104 5.88141 6.01872 6.25447 6.35576 6.45845 6.61905 6.74053 7.05156 7.30042 8.87372 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002526 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.426343 B =11080.703349 C =11927.165623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.533 4.533 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.120 4.120 11 C 0.085 3.915 12 H 0.127 0.873 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.548 6.548 16 N -0.662 5.662 17 C 0.137 3.863 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.091 4.091 21 C -0.022 4.022 22 C 0.209 3.791 23 N -0.490 5.490 24 C -0.054 4.054 25 C -0.067 4.067 26 O -0.215 6.215 27 C -0.113 4.113 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.345 0.655 34 H 0.357 0.643 35 H 0.430 0.570 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.146 0.854 39 H 0.220 0.780 40 H 0.258 0.742 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.208 -15.130 5.027 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.157 1.157 7 C -0.571 4.571 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.160 4.160 11 C -0.031 4.031 12 H 0.145 0.855 13 N -0.364 5.364 14 C 0.312 3.688 15 O -0.424 6.424 16 N -0.310 5.310 17 C 0.043 3.957 18 C -0.139 4.139 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.024 4.024 22 C 0.007 3.993 23 N -0.220 5.220 24 C -0.194 4.194 25 C -0.137 4.137 26 O -0.101 6.101 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.269 0.731 36 H 0.180 0.820 37 H 0.191 0.809 38 H 0.164 0.836 39 H 0.237 0.763 40 H 0.274 0.726 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 22.888 -15.966 4.962 28.344 hybrid contribution -1.218 1.622 -0.895 2.217 sum 21.669 -14.344 4.067 26.303 Atomic orbital electron populations 1.70085 1.08551 1.28197 1.52521 1.26090 0.95622 1.03802 0.94066 0.85612 0.79839 0.77772 0.79120 1.19510 1.21553 1.15735 1.21442 0.92231 0.92878 1.50599 0.95466 1.19508 0.93766 0.93770 0.97359 1.22050 0.93085 0.98900 1.01938 1.21444 0.93555 0.91298 0.96765 0.85492 1.58746 1.66547 1.07840 1.03234 1.21084 0.76348 0.88893 0.82448 1.90677 1.47607 1.65983 1.38112 1.43456 1.59512 1.16450 1.11533 1.17733 0.93074 0.86582 0.98329 1.21511 1.00515 0.92847 0.99049 1.21311 0.94564 0.95942 0.98908 1.21324 0.96605 0.99387 0.93797 1.17286 0.92856 0.95091 0.97170 1.24084 0.97385 0.85839 0.91997 1.70600 1.09064 1.19685 1.22640 1.24005 0.99438 1.00055 0.95885 1.26117 0.92468 0.92459 1.02665 1.84581 1.38836 1.44166 1.42555 1.21050 0.95602 0.96241 1.00568 0.92572 0.94690 0.95889 0.93972 0.91131 0.84139 0.82691 0.73057 0.81971 0.80882 0.83609 0.76323 0.72574 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.95 41.68 27.47 68.60 1.88 43.57 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.53 -29.14 9.66 25.60 0.25 -28.90 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 9 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 10 C -0.12 -4.12 4.78 30.59 0.15 -3.98 16 11 C 0.08 2.37 3.21 44.17 0.14 2.52 16 12 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 13 N -0.83 -24.09 8.94 -171.80 -1.54 -25.63 16 14 C 0.52 15.43 6.81 87.66 0.60 16.03 16 15 O -0.55 -20.08 13.94 -3.05 -0.04 -20.12 16 16 N -0.66 -15.07 5.34 -303.60 -1.62 -16.69 16 17 C 0.14 3.24 6.27 38.11 0.24 3.48 16 18 C -0.12 -2.01 9.95 22.45 0.22 -1.79 16 19 C -0.09 -1.34 10.02 22.22 0.22 -1.12 16 20 C -0.09 -1.82 9.68 22.54 0.22 -1.60 16 21 C -0.02 -0.58 5.87 -20.11 -0.12 -0.69 16 22 C 0.21 5.70 7.90 87.33 0.69 6.39 16 23 N -0.49 -12.16 10.91 -305.06 -3.33 -15.49 16 24 C -0.05 -0.97 11.87 83.49 0.99 0.03 16 25 C -0.07 -1.15 12.17 66.97 0.82 -0.33 16 26 O -0.22 -5.69 10.52 -8.37 -0.09 -5.78 16 27 C -0.11 -3.16 8.32 22.65 0.19 -2.98 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 29 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 30 H 0.02 0.91 6.30 -2.39 -0.02 0.89 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.35 10.62 8.58 -89.69 -0.77 9.85 16 34 H 0.36 9.66 7.55 -89.70 -0.68 8.99 16 35 H 0.43 6.88 8.82 -92.71 -0.82 6.06 16 36 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.15 2.60 7.83 -2.91 -0.02 2.58 16 39 H 0.22 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.26 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.12 3.88 6.26 -2.91 -0.02 3.86 16 Total: -1.00 -78.33 353.12 -0.47 -78.80 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -1.22 Total: 32.13 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.18 Total: -12.59 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -6.18 Total: -116.02 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.13 Total: -25.90 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Total: -78.33 -0.47 -78.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.739 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds