Wall clock time and date at job start Tue Mar 31 2020 10:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48492 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47074 * 299.99907 * 3 2 1 6 6 H 1.48502 * 109.46774 * 59.99660 * 3 2 1 7 7 C 1.37877 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00375 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99955 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47224 * 180.02562 * 11 10 9 13 13 C 1.38293 * 119.97397 * 270.02092 * 12 11 10 14 14 C 1.38241 * 120.11593 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.05085 * 359.68458 * 14 13 12 16 16 C 1.38712 * 119.94420 * 0.57071 * 15 14 13 17 17 O 1.35902 * 120.05155 * 179.72062 * 16 15 14 18 18 C 1.42901 * 117.00471 * 359.72759 * 17 16 15 19 19 C 1.50697 * 109.47191 * 179.97438 * 18 17 16 20 20 C 1.38241 * 119.97433 * 89.99768 * 19 18 17 21 21 C 1.38205 * 120.02377 * 179.74187 * 20 19 18 22 22 C 1.38455 * 119.97496 * 0.26259 * 21 20 19 23 23 F 1.35097 * 120.02414 * 180.02562 * 22 21 20 24 24 C 1.38464 * 119.95049 * 359.97438 * 22 21 20 25 25 C 1.38201 * 119.97214 * 0.02562 * 24 22 21 26 26 C 1.38124 * 119.97647 * 90.00205 * 12 11 10 27 27 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46861 * 60.00255 * 9 7 2 29 29 H 1.08998 * 109.47225 * 300.00673 * 9 7 2 30 30 H 1.00903 * 111.00167 * 303.95972 * 10 9 7 31 31 H 1.09006 * 109.47273 * 60.00065 * 11 10 9 32 32 H 1.08995 * 109.47678 * 300.00412 * 11 10 9 33 33 H 1.07999 * 119.93792 * 0.02562 * 13 12 11 34 34 H 1.07991 * 119.97578 * 179.97438 * 14 13 12 35 35 H 1.08003 * 120.02861 * 180.29438 * 15 14 13 36 36 H 1.09002 * 109.46929 * 59.99830 * 18 17 16 37 37 H 1.08994 * 109.46774 * 300.00173 * 18 17 16 38 38 H 1.08002 * 119.99029 * 0.02809 * 20 19 18 39 39 H 1.08004 * 120.00758 * 180.27782 * 21 20 19 40 40 H 1.07993 * 120.01407 * 180.02562 * 24 22 21 41 41 H 1.07996 * 119.98812 * 180.02562 * 25 24 22 42 42 H 1.08004 * 120.02402 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0015 11 6 1.5052 -4.9070 0.0020 12 6 2.5146 -6.0260 0.0023 13 6 2.9777 -6.5391 -1.1955 14 6 3.9033 -7.5659 -1.1985 15 6 4.3730 -8.0777 -0.0041 16 6 3.9061 -7.5683 1.1987 17 8 4.3624 -8.0739 2.3747 18 6 5.3181 -9.1335 2.2982 19 6 5.7056 -9.5619 3.6901 20 6 4.9940 -10.5603 4.3287 21 6 5.3518 -10.9577 5.6031 22 6 6.4201 -10.3517 6.2423 23 9 6.7711 -10.7398 7.4878 24 6 7.1291 -9.3484 5.6036 25 6 6.7694 -8.9527 4.3292 26 6 2.9769 -6.5380 1.1990 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6245 -2.5563 0.8919 30 1 2.8399 -3.5491 -0.7804 31 1 0.8799 -4.9816 -0.8878 32 1 0.8806 -4.9814 0.8921 33 1 2.6156 -6.1369 -2.1301 34 1 4.2631 -7.9652 -2.1352 35 1 5.0997 -8.8766 -0.0070 36 1 6.2035 -8.7865 1.7655 37 1 4.8817 -9.9786 1.7658 38 1 4.1610 -11.0332 3.8298 39 1 4.7985 -11.7409 6.1001 40 1 7.9628 -8.8754 6.1010 41 1 7.3225 -8.1705 3.8306 42 1 2.6149 -6.1370 2.1342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425970533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:10 Heat of formation + Delta-G solvation = -36.353609 kcal Electronic energy + Delta-G solvation = -23735.770035 eV Core-core repulsion = 19981.125077 eV Total energy + Delta-G solvation = -3754.644957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.28761 -40.36032 -39.34616 -37.65120 -35.13943 -32.64909 -32.31927 -31.59525 -30.88241 -29.72634 -27.11389 -26.46692 -24.27792 -23.51857 -22.45073 -22.14055 -21.42888 -20.64470 -18.09786 -17.87188 -16.97681 -16.68705 -16.35259 -15.99043 -15.90693 -15.54029 -15.36232 -14.86258 -14.52909 -14.40427 -14.00247 -13.82162 -13.64662 -13.40758 -13.26786 -13.06445 -12.68761 -12.35552 -12.30482 -11.86759 -11.52940 -11.49048 -11.37992 -11.20023 -11.04523 -10.76795 -10.70643 -10.53398 -9.94455 -9.54903 -9.19977 -9.10950 -8.69820 -8.48276 -8.13208 -7.30913 -6.03346 -4.05146 0.57868 0.79690 1.43782 1.55961 2.84091 3.31522 3.38718 3.44186 3.47491 3.82556 3.86777 4.22997 4.29118 4.44193 4.47086 4.65423 4.74484 4.85010 4.91501 5.00081 5.09202 5.19939 5.32737 5.43953 5.45638 5.50347 5.51059 5.60768 5.65913 5.67283 5.76507 5.97633 6.02778 6.18662 6.22268 6.37515 6.41934 6.51549 6.77843 6.90462 7.22829 7.40242 7.42331 7.78143 8.11343 8.37355 8.58924 9.04284 9.59770 11.07809 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002128 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.228247 B =13157.240712 C =14376.898089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.092 3.908 12 C -0.027 4.027 13 C -0.152 4.152 14 C -0.083 4.083 15 C -0.218 4.218 16 C 0.123 3.877 17 O -0.309 6.309 18 C 0.103 3.897 19 C -0.104 4.104 20 C -0.065 4.065 21 C -0.158 4.158 22 C 0.106 3.894 23 F -0.139 7.139 24 C -0.157 4.157 25 C -0.064 4.064 26 C -0.128 4.128 27 H 0.261 0.739 28 H -0.012 1.012 29 H 0.029 0.971 30 H 0.330 0.670 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -25.202 5.386 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.313 5.313 11 C -0.037 4.037 12 C -0.027 4.027 13 C -0.170 4.170 14 C -0.101 4.101 15 C -0.237 4.237 16 C 0.079 3.921 17 O -0.224 6.224 18 C 0.028 3.972 19 C -0.105 4.105 20 C -0.084 4.084 21 C -0.176 4.176 22 C 0.087 3.913 23 F -0.118 7.118 24 C -0.175 4.175 25 C -0.082 4.082 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.005 0.995 29 H 0.047 0.953 30 H 0.147 0.853 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.215 -25.015 6.327 28.548 hybrid contribution 0.236 0.719 -0.799 1.100 sum 12.452 -24.297 5.528 27.855 Atomic orbital electron populations 1.69972 1.06077 1.26700 1.51003 1.24997 0.94895 0.99404 0.95356 0.86417 0.80076 0.83281 0.77496 1.19641 1.21099 1.20977 1.21216 0.93591 0.90149 1.50193 0.91868 1.19599 0.90592 0.87260 0.95910 1.60734 1.21075 1.00428 1.49093 1.20915 0.93276 0.88618 1.00894 1.19848 0.96000 0.94967 0.91928 1.21018 0.99717 0.98425 0.97871 1.20835 0.96203 0.95960 0.97130 1.21110 1.05469 1.04747 0.92350 1.18946 0.94765 0.94214 0.84193 1.86150 1.57434 1.50228 1.28564 1.21495 0.92229 0.89761 0.93729 1.19594 0.97035 0.97782 0.96055 1.20965 0.98054 0.95770 0.93566 1.21157 0.97835 1.02402 0.96252 1.17803 0.96307 0.96642 0.80570 1.91514 1.91406 1.90062 1.38772 1.21177 1.01837 0.98286 0.96239 1.20999 0.95948 0.97721 0.93554 1.20328 0.98711 0.96527 0.99153 0.92956 0.99472 0.95268 0.85323 0.95045 0.90669 0.86090 0.86115 0.86020 0.90947 0.91030 0.84637 0.84406 0.84340 0.84515 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.08 5.44 -4.98 -0.03 5.05 16 10 N -0.68 -14.85 6.48 -116.34 -0.75 -15.60 16 11 C 0.09 1.66 5.81 -4.98 -0.03 1.63 16 12 C -0.03 -0.42 5.39 -104.64 -0.56 -0.98 16 13 C -0.15 -2.07 9.70 -39.56 -0.38 -2.45 16 14 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 15 C -0.22 -2.51 9.04 -39.43 -0.36 -2.86 16 16 C 0.12 1.65 6.69 -39.22 -0.26 1.39 16 17 O -0.31 -3.84 10.12 -19.43 -0.20 -4.04 16 18 C 0.10 0.88 4.86 36.00 0.18 1.05 16 19 C -0.10 -0.87 5.51 -104.62 -0.58 -1.45 16 20 C -0.07 -0.50 9.70 -39.59 -0.38 -0.88 16 21 C -0.16 -1.21 10.03 -39.51 -0.40 -1.60 16 22 C 0.11 0.92 7.30 -39.42 -0.29 0.63 16 23 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 24 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 25 C -0.06 -0.51 9.70 -39.59 -0.38 -0.89 16 26 C -0.13 -1.96 9.64 -39.44 -0.38 -2.34 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.33 6.91 8.71 -39.29 -0.34 6.57 16 31 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.06 6.30 -52.48 -0.33 0.73 16 36 H 0.07 0.53 7.59 -51.93 -0.39 0.14 16 37 H 0.07 0.49 7.62 -51.93 -0.40 0.10 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -31.86 366.86 -10.39 -42.24 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.65 Total: 2.76 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -5.07 Total: -20.22 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.02 Total: -41.80 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.86 -10.39 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425970533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.891 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds