Wall clock time and date at job start Tue Mar 31 2020 10:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48492 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47074 * 299.99907 * 3 2 1 6 6 H 1.48502 * 109.46774 * 59.99660 * 3 2 1 7 7 C 1.37877 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00375 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99955 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47224 * 180.02562 * 11 10 9 13 13 C 1.38293 * 119.97397 * 270.02092 * 12 11 10 14 14 C 1.38241 * 120.11593 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.05085 * 359.68458 * 14 13 12 16 16 C 1.38712 * 119.94420 * 0.57071 * 15 14 13 17 17 O 1.35902 * 120.05155 * 179.72062 * 16 15 14 18 18 C 1.42901 * 117.00471 * 359.72759 * 17 16 15 19 19 C 1.50697 * 109.47191 * 179.97438 * 18 17 16 20 20 C 1.38241 * 119.97433 * 89.99768 * 19 18 17 21 21 C 1.38205 * 120.02377 * 179.74187 * 20 19 18 22 22 C 1.38455 * 119.97496 * 0.26259 * 21 20 19 23 23 F 1.35097 * 120.02414 * 180.02562 * 22 21 20 24 24 C 1.38464 * 119.95049 * 359.97438 * 22 21 20 25 25 C 1.38201 * 119.97214 * 0.02562 * 24 22 21 26 26 C 1.38124 * 119.97647 * 90.00205 * 12 11 10 27 27 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46861 * 60.00255 * 9 7 2 29 29 H 1.08998 * 109.47225 * 300.00673 * 9 7 2 30 30 H 1.00903 * 111.00167 * 303.95972 * 10 9 7 31 31 H 1.09006 * 109.47273 * 60.00065 * 11 10 9 32 32 H 1.08995 * 109.47678 * 300.00412 * 11 10 9 33 33 H 1.07999 * 119.93792 * 0.02562 * 13 12 11 34 34 H 1.07991 * 119.97578 * 179.97438 * 14 13 12 35 35 H 1.08003 * 120.02861 * 180.29438 * 15 14 13 36 36 H 1.09002 * 109.46929 * 59.99830 * 18 17 16 37 37 H 1.08994 * 109.46774 * 300.00173 * 18 17 16 38 38 H 1.08002 * 119.99029 * 0.02809 * 20 19 18 39 39 H 1.08004 * 120.00758 * 180.27782 * 21 20 19 40 40 H 1.07993 * 120.01407 * 180.02562 * 24 22 21 41 41 H 1.07996 * 119.98812 * 180.02562 * 25 24 22 42 42 H 1.08004 * 120.02402 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0015 11 6 1.5052 -4.9070 0.0020 12 6 2.5146 -6.0260 0.0023 13 6 2.9777 -6.5391 -1.1955 14 6 3.9033 -7.5659 -1.1985 15 6 4.3730 -8.0777 -0.0041 16 6 3.9061 -7.5683 1.1987 17 8 4.3624 -8.0739 2.3747 18 6 5.3181 -9.1335 2.2982 19 6 5.7056 -9.5619 3.6901 20 6 4.9940 -10.5603 4.3287 21 6 5.3518 -10.9577 5.6031 22 6 6.4201 -10.3517 6.2423 23 9 6.7711 -10.7398 7.4878 24 6 7.1291 -9.3484 5.6036 25 6 6.7694 -8.9527 4.3292 26 6 2.9769 -6.5380 1.1990 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5575 -0.8881 29 1 0.6245 -2.5563 0.8919 30 1 2.8399 -3.5491 -0.7804 31 1 0.8799 -4.9816 -0.8878 32 1 0.8806 -4.9814 0.8921 33 1 2.6156 -6.1369 -2.1301 34 1 4.2631 -7.9652 -2.1352 35 1 5.0997 -8.8766 -0.0070 36 1 6.2035 -8.7865 1.7655 37 1 4.8817 -9.9786 1.7658 38 1 4.1610 -11.0332 3.8298 39 1 4.7985 -11.7409 6.1001 40 1 7.9628 -8.8754 6.1010 41 1 7.3225 -8.1705 3.8306 42 1 2.6149 -6.1370 2.1342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425970533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:09 Heat of formation + Delta-G solvation = -54.182129 kcal Electronic energy + Delta-G solvation = -23736.543137 eV Core-core repulsion = 19981.125077 eV Total energy + Delta-G solvation = -3755.418060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.96690 -41.23566 -40.06218 -38.66825 -36.81078 -34.63534 -33.00906 -32.24684 -32.16528 -30.74492 -28.84757 -27.29692 -25.85573 -24.09408 -23.52610 -23.45024 -22.80976 -21.65036 -19.01758 -18.72191 -18.34074 -17.62613 -17.49269 -16.98395 -16.73409 -16.64306 -16.34589 -16.25903 -16.00162 -15.29576 -15.14937 -14.82032 -14.64128 -14.53701 -14.32396 -14.16190 -13.93832 -13.40394 -13.35161 -13.24019 -12.98603 -12.73120 -12.65621 -12.52115 -12.32930 -12.12828 -12.04279 -11.77101 -11.65248 -11.28756 -10.67884 -10.12241 -9.79370 -9.74475 -9.20381 -9.05403 -8.23284 -6.34557 -0.05182 0.22395 0.38889 0.54368 1.41069 1.42185 1.56185 2.11927 2.39930 2.77677 2.82654 3.09937 3.21969 3.61905 3.67839 3.72621 3.91066 3.95622 3.97753 4.08967 4.17799 4.25256 4.29133 4.39854 4.45382 4.52927 4.58218 4.72742 4.87219 4.91859 4.92351 5.06959 5.09495 5.11737 5.17640 5.23832 5.37318 5.43956 5.52128 5.59999 5.72468 5.83331 5.86298 6.00426 6.41296 6.51051 6.68488 6.86943 7.36265 8.88484 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002128 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.228247 B =13157.240712 C =14376.898089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.096 3.904 12 C -0.044 4.044 13 C -0.160 4.160 14 C -0.075 4.075 15 C -0.206 4.206 16 C 0.123 3.877 17 O -0.328 6.328 18 C 0.097 3.903 19 C -0.115 4.115 20 C -0.069 4.069 21 C -0.161 4.161 22 C 0.087 3.913 23 F -0.148 7.148 24 C -0.163 4.163 25 C -0.071 4.071 26 C -0.153 4.153 27 H 0.266 0.734 28 H -0.034 1.034 29 H 0.000 1.000 30 H 0.336 0.664 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.354 -26.325 4.356 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.313 5.313 11 C -0.033 4.033 12 C -0.044 4.044 13 C -0.179 4.179 14 C -0.093 4.093 15 C -0.225 4.225 16 C 0.078 3.922 17 O -0.243 6.243 18 C 0.023 3.977 19 C -0.115 4.115 20 C -0.087 4.087 21 C -0.180 4.180 22 C 0.068 3.932 23 F -0.126 7.126 24 C -0.181 4.181 25 C -0.089 4.089 26 C -0.172 4.172 27 H 0.074 0.926 28 H -0.017 1.017 29 H 0.018 0.982 30 H 0.153 0.847 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.247 -26.169 5.298 30.263 hybrid contribution -0.368 0.931 -0.436 1.092 sum 13.879 -25.238 4.862 29.210 Atomic orbital electron populations 1.70096 1.07781 1.27998 1.51504 1.25973 0.95838 1.03439 0.94557 0.85252 0.78875 0.78158 0.77808 1.18713 1.20093 1.20406 1.21552 0.93787 0.91366 1.50615 0.91830 1.19245 0.90622 0.88727 0.93432 1.60584 1.20443 1.00873 1.49447 1.20863 0.94030 0.87858 1.00511 1.19569 0.96652 0.95029 0.93179 1.21175 1.00341 0.99215 0.97184 1.21228 0.94705 0.94576 0.98768 1.21504 1.05045 1.04711 0.91238 1.18944 0.94235 0.93682 0.85386 1.86128 1.58306 1.51382 1.28439 1.21780 0.92193 0.89466 0.94253 1.19743 0.97313 0.98123 0.96336 1.21216 0.98340 0.95604 0.93510 1.21388 0.97560 1.02599 0.96406 1.18074 0.97159 0.97436 0.80538 1.91488 1.91572 1.90229 1.39351 1.21375 1.02178 0.98149 0.96410 1.21213 0.96143 0.97984 0.93599 1.20279 1.00377 0.98190 0.98345 0.92559 1.01677 0.98160 0.84665 0.94652 0.91729 0.85376 0.82611 0.82451 0.89345 0.88890 0.82873 0.82862 0.83121 0.83316 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -31.15 9.32 25.60 0.24 -30.91 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.40 5.44 85.56 0.47 11.86 16 10 N -0.68 -30.69 6.48 -522.00 -3.38 -34.07 16 11 C 0.10 3.60 5.81 85.56 0.50 4.10 16 12 C -0.04 -1.37 5.39 -19.88 -0.11 -1.48 16 13 C -0.16 -4.13 9.70 22.28 0.22 -3.92 16 14 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 15 C -0.21 -4.00 9.04 22.37 0.20 -3.80 16 16 C 0.12 3.09 6.69 22.50 0.15 3.24 16 17 O -0.33 -7.62 10.12 -92.44 -0.94 -8.55 16 18 C 0.10 1.38 4.86 71.23 0.35 1.73 16 19 C -0.11 -1.71 5.51 -19.86 -0.11 -1.82 16 20 C -0.07 -0.92 9.70 22.26 0.22 -0.71 16 21 C -0.16 -2.28 10.03 22.31 0.22 -2.05 16 22 C 0.09 1.46 7.30 22.38 0.16 1.62 16 23 F -0.15 -2.77 17.27 44.97 0.78 -1.99 16 24 C -0.16 -2.44 10.03 22.31 0.22 -2.21 16 25 C -0.07 -1.04 9.70 22.26 0.22 -0.82 16 26 C -0.15 -4.72 9.64 22.36 0.22 -4.51 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.34 14.32 8.71 -89.69 -0.78 13.54 16 31 H 0.04 1.28 8.09 -2.38 -0.02 1.26 16 32 H 0.06 2.49 8.08 -2.39 -0.02 2.47 16 33 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.16 1.90 6.30 -2.91 -0.02 1.88 16 36 H 0.09 0.97 7.59 -2.39 -0.02 0.96 16 37 H 0.09 0.92 7.62 -2.39 -0.02 0.90 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -69.97 366.86 2.86 -67.11 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.25 Total: 17.87 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.84 Total: -30.48 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.10 Total: -90.78 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.94 Total: -8.55 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.97 2.86 -67.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425970533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.930 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds