Wall clock time and date at job start Tue Mar 31 2020 11:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00325 * 2 1 4 4 C 1.52996 * 109.47231 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46955 * 65.62382 * 4 3 2 6 6 C 1.36939 * 120.00346 * 84.91973 * 5 4 3 7 7 H 1.07998 * 120.00358 * 169.91267 * 6 5 4 8 8 C 1.38813 * 119.99589 * 349.91052 * 6 5 4 9 9 N 1.31622 * 120.00051 * 358.42976 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 178.43006 * 8 6 5 11 11 H 1.48498 * 109.46880 * 59.99938 * 10 8 6 12 12 H 1.48494 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47298 * 300.00147 * 10 8 6 14 14 C 1.46506 * 119.99799 * 264.91728 * 5 4 3 15 15 C 1.50702 * 109.47118 * 264.60013 * 14 5 4 16 16 C 1.38166 * 120.02878 * 263.52219 * 15 14 5 17 17 C 1.38243 * 120.05557 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.94506 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.10943 * 359.97438 * 17 16 15 20 20 C 1.38127 * 120.05836 * 359.74414 * 19 17 16 21 21 C 1.38708 * 120.02608 * 83.49927 * 15 14 5 22 22 O 1.35899 * 120.05724 * 359.97438 * 21 15 14 23 23 C 1.42897 * 117.00354 * 180.02562 * 22 21 15 24 24 F 1.39908 * 109.47165 * 300.00466 * 23 22 21 25 25 F 1.39901 * 109.47350 * 59.99779 * 23 22 21 26 26 H 1.08999 * 109.46901 * 299.99933 * 1 2 3 27 27 H 1.08999 * 109.47081 * 59.99620 * 1 2 3 28 28 H 1.08991 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46638 * 60.00083 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00424 * 3 2 1 31 31 H 1.08995 * 109.47246 * 305.62364 * 4 3 2 32 32 H 1.09001 * 109.47102 * 185.62000 * 4 3 2 33 33 H 0.96998 * 119.99647 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46565 * 144.60144 * 14 5 4 35 35 H 1.08999 * 109.46863 * 24.60221 * 14 5 4 36 36 H 1.08001 * 119.97248 * 359.97438 * 16 15 14 37 37 H 1.09003 * 109.46743 * 89.99819 * 18 17 16 38 38 H 1.08989 * 109.47327 * 209.99960 * 18 17 16 39 39 H 1.09007 * 109.46801 * 330.00184 * 18 17 16 40 40 H 1.07999 * 119.96812 * 180.02562 * 19 17 16 41 41 H 1.07992 * 120.03013 * 180.27471 * 20 19 17 42 42 H 1.08995 * 109.47680 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9777 0.5775 -1.2572 6 6 4.1698 1.3596 -2.3647 7 1 4.6481 0.9472 -3.2407 8 6 3.7497 2.6826 -2.3613 9 7 3.1390 3.1765 -1.3051 10 14 4.0510 3.7621 -3.8558 11 1 3.3711 3.1727 -5.0372 12 1 3.5106 5.1216 -3.6015 13 1 5.5101 3.8497 -4.1171 14 6 4.2146 -0.8665 -1.3301 15 6 5.6783 -1.1473 -1.1073 16 6 6.5221 -1.3173 -2.1881 17 6 7.8648 -1.5755 -1.9843 18 6 8.7828 -1.7610 -3.1650 19 6 8.3670 -1.6638 -0.6989 20 6 7.5287 -1.4889 0.3849 21 6 6.1797 -1.2350 0.1830 22 8 5.3520 -1.0672 1.2477 23 6 5.9374 -1.1704 2.5472 24 9 6.5005 -2.4413 2.7054 25 9 6.9334 -0.1983 2.6886 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8465 -0.8900 31 1 3.8501 0.5594 0.8362 32 1 3.9784 2.1754 0.1013 33 1 2.8458 4.1011 -1.3027 34 1 3.9196 -1.2337 -2.3131 35 1 3.6269 -1.3702 -0.5626 36 1 6.1322 -1.2492 -3.1930 37 1 9.1991 -0.7967 -3.4565 38 1 9.5918 -2.4388 -2.8932 39 1 8.2212 -2.1815 -3.9993 40 1 9.4164 -1.8652 -0.5423 41 1 7.9222 -1.5536 1.3885 42 1 5.1692 -1.0169 3.3051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453594060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:53 Heat of formation + Delta-G solvation = -132.320653 kcal Electronic energy + Delta-G solvation = -28020.569701 eV Core-core repulsion = 23830.994075 eV Total energy + Delta-G solvation = -4189.575625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.15294 -47.14145 -39.72916 -37.28467 -36.96602 -35.30221 -32.44686 -31.38639 -30.19666 -28.41738 -27.01240 -25.69427 -25.45524 -24.96496 -22.83028 -22.00091 -20.72050 -19.83074 -18.51779 -17.83987 -17.70310 -16.71125 -15.75964 -15.37639 -15.02263 -14.90784 -14.60707 -14.42642 -14.28545 -13.87662 -13.79380 -13.55944 -13.50211 -13.27921 -13.17040 -12.97608 -12.82147 -12.66957 -12.25468 -11.90601 -11.57221 -11.48459 -11.05712 -10.92826 -10.88900 -10.77772 -10.68862 -10.48678 -10.28137 -9.92021 -9.74326 -9.56748 -8.75672 -8.38733 -8.18583 -7.73074 -6.73831 -5.61698 -3.09262 1.76630 1.82211 2.93370 3.40247 3.45290 3.45916 3.66598 4.10750 4.50859 4.53743 4.85570 5.01032 5.12657 5.19545 5.27207 5.43930 5.51495 5.69879 5.74337 5.82626 5.93400 5.97184 6.04868 6.07378 6.13339 6.22040 6.30007 6.47278 6.67558 6.77254 6.82956 6.89087 6.94879 7.01790 7.20850 7.23261 7.58020 7.61541 7.85715 7.89940 8.37391 8.51932 9.32125 9.91182 10.36440 11.32692 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.006153 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.629820 B = 4549.255322 C = 6095.767082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.403 6.403 3 C 0.060 3.940 4 C 0.181 3.819 5 N -0.583 5.583 6 C -0.222 4.222 7 H 0.072 0.928 8 C -0.016 4.016 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.192 3.808 15 C -0.087 4.087 16 C -0.078 4.078 17 C -0.116 4.116 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.191 4.191 21 C 0.107 3.893 22 O -0.302 6.302 23 C 0.408 3.592 24 F -0.207 7.207 25 F -0.201 7.201 26 H 0.023 0.977 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.008 0.992 30 H 0.089 0.911 31 H 0.019 0.981 32 H 0.107 0.893 33 H 0.249 0.751 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -9.260 5.178 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.323 6.323 3 C -0.017 4.017 4 C 0.056 3.944 5 N -0.302 5.302 6 C -0.352 4.352 7 H 0.090 0.910 8 C -0.210 4.210 9 N -0.572 5.572 10 Si 0.742 3.258 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.064 3.936 15 C -0.091 4.091 16 C -0.097 4.097 17 C -0.117 4.117 18 C -0.163 4.163 19 C -0.121 4.121 20 C -0.210 4.210 21 C 0.063 3.937 22 O -0.219 6.219 23 C 0.317 3.683 24 F -0.189 7.189 25 F -0.183 7.183 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.664 -9.189 5.179 11.533 hybrid contribution 0.255 1.000 -0.504 1.148 sum 4.919 -8.190 4.675 10.636 Atomic orbital electron populations 1.22447 0.84324 1.00358 0.98620 1.87855 1.16938 1.32220 1.95267 1.24077 0.96878 0.80822 0.99911 1.21095 0.89998 0.98646 0.84644 1.44021 1.76623 1.00720 1.08870 1.19378 1.30363 0.92672 0.92747 0.90986 1.24755 1.00598 0.97692 0.97935 1.70098 1.44912 1.14214 1.27955 0.86199 0.77713 0.79733 0.82149 1.21365 1.21736 1.21352 1.19655 0.87400 0.86489 1.00032 1.20630 1.01177 0.98358 0.88913 1.20768 0.92084 0.98445 0.98353 1.19819 0.94658 1.02562 0.94624 1.20687 0.98148 1.01646 0.95789 1.20588 0.98767 1.01165 0.91581 1.21354 0.92605 1.06897 1.00098 1.18654 0.88673 0.99601 0.86750 1.86754 1.36415 1.86387 1.12359 1.23343 0.84625 0.72003 0.88318 1.93062 1.87449 1.42714 1.95625 1.93082 1.65644 1.63847 1.95760 0.95878 0.95259 0.91650 0.97424 0.89324 0.96290 0.87522 0.93954 0.93233 0.91789 0.85624 0.91590 0.92216 0.91827 0.86519 0.85822 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 11.01 101.05 1.11 1.82 16 2 O -0.40 -8.92 10.30 -35.23 -0.36 -9.28 16 3 C 0.06 1.43 5.38 37.16 0.20 1.63 16 4 C 0.18 4.43 5.33 -4.04 -0.02 4.41 16 5 N -0.58 -14.37 2.49 -174.61 -0.43 -14.80 16 6 C -0.22 -5.88 9.77 -15.06 -0.15 -6.02 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.02 -0.43 5.27 -17.43 -0.09 -0.52 16 9 N -0.92 -25.03 7.24 55.49 0.40 -24.63 16 10 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.19 4.12 5.42 -5.19 -0.03 4.09 16 15 C -0.09 -1.72 5.44 -104.47 -0.57 -2.29 16 16 C -0.08 -1.39 9.32 -39.61 -0.37 -1.76 16 17 C -0.12 -1.85 5.88 -104.60 -0.62 -2.46 16 18 C -0.11 -1.31 10.01 36.01 0.36 -0.94 16 19 C -0.10 -1.61 9.69 -39.60 -0.38 -1.99 16 20 C -0.19 -3.25 8.26 -39.43 -0.33 -3.58 16 21 C 0.11 2.01 6.46 -39.22 -0.25 1.75 16 22 O -0.30 -5.34 7.68 -19.42 -0.15 -5.49 16 23 C 0.41 5.49 5.98 101.05 0.60 6.09 16 24 F -0.21 -2.82 15.60 2.25 0.04 -2.78 16 25 F -0.20 -3.03 15.57 2.25 0.04 -2.99 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 2.37 6.05 -51.93 -0.31 2.05 16 31 H 0.02 0.44 6.02 -51.93 -0.31 0.13 16 32 H 0.11 2.90 5.96 -51.93 -0.31 2.59 16 33 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.05 1.04 7.98 -51.93 -0.41 0.62 16 35 H 0.06 1.39 7.34 -51.93 -0.38 1.01 16 36 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.63 8.08 -51.94 -0.42 0.21 16 39 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.96 5.10 -52.49 -0.27 1.69 16 42 H 0.18 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -29.72 348.68 -6.54 -36.26 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.77 Total: 1.63 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.53 Total: 0.22 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.03 Total: -39.43 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.51 Total: -14.77 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.07 Total: -5.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.72 -6.54 -36.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453594060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.059 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds