Wall clock time and date at job start Tue Mar 31 2020 11:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00325 * 2 1 4 4 C 1.52996 * 109.47231 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46955 * 65.62382 * 4 3 2 6 6 C 1.36939 * 120.00346 * 84.91973 * 5 4 3 7 7 H 1.07998 * 120.00358 * 169.91267 * 6 5 4 8 8 C 1.38813 * 119.99589 * 349.91052 * 6 5 4 9 9 N 1.31622 * 120.00051 * 358.42976 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 178.43006 * 8 6 5 11 11 H 1.48498 * 109.46880 * 59.99938 * 10 8 6 12 12 H 1.48494 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47298 * 300.00147 * 10 8 6 14 14 C 1.46506 * 119.99799 * 264.91728 * 5 4 3 15 15 C 1.50702 * 109.47118 * 264.60013 * 14 5 4 16 16 C 1.38166 * 120.02878 * 263.52219 * 15 14 5 17 17 C 1.38243 * 120.05557 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.94506 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.10943 * 359.97438 * 17 16 15 20 20 C 1.38127 * 120.05836 * 359.74414 * 19 17 16 21 21 C 1.38708 * 120.02608 * 83.49927 * 15 14 5 22 22 O 1.35899 * 120.05724 * 359.97438 * 21 15 14 23 23 C 1.42897 * 117.00354 * 180.02562 * 22 21 15 24 24 F 1.39908 * 109.47165 * 300.00466 * 23 22 21 25 25 F 1.39901 * 109.47350 * 59.99779 * 23 22 21 26 26 H 1.08999 * 109.46901 * 299.99933 * 1 2 3 27 27 H 1.08999 * 109.47081 * 59.99620 * 1 2 3 28 28 H 1.08991 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46638 * 60.00083 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00424 * 3 2 1 31 31 H 1.08995 * 109.47246 * 305.62364 * 4 3 2 32 32 H 1.09001 * 109.47102 * 185.62000 * 4 3 2 33 33 H 0.96998 * 119.99647 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46565 * 144.60144 * 14 5 4 35 35 H 1.08999 * 109.46863 * 24.60221 * 14 5 4 36 36 H 1.08001 * 119.97248 * 359.97438 * 16 15 14 37 37 H 1.09003 * 109.46743 * 89.99819 * 18 17 16 38 38 H 1.08989 * 109.47327 * 209.99960 * 18 17 16 39 39 H 1.09007 * 109.46801 * 330.00184 * 18 17 16 40 40 H 1.07999 * 119.96812 * 180.02562 * 19 17 16 41 41 H 1.07992 * 120.03013 * 180.27471 * 20 19 17 42 42 H 1.08995 * 109.47680 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9777 0.5775 -1.2572 6 6 4.1698 1.3596 -2.3647 7 1 4.6481 0.9472 -3.2407 8 6 3.7497 2.6826 -2.3613 9 7 3.1390 3.1765 -1.3051 10 14 4.0510 3.7621 -3.8558 11 1 3.3711 3.1727 -5.0372 12 1 3.5106 5.1216 -3.6015 13 1 5.5101 3.8497 -4.1171 14 6 4.2146 -0.8665 -1.3301 15 6 5.6783 -1.1473 -1.1073 16 6 6.5221 -1.3173 -2.1881 17 6 7.8648 -1.5755 -1.9843 18 6 8.7828 -1.7610 -3.1650 19 6 8.3670 -1.6638 -0.6989 20 6 7.5287 -1.4889 0.3849 21 6 6.1797 -1.2350 0.1830 22 8 5.3520 -1.0672 1.2477 23 6 5.9374 -1.1704 2.5472 24 9 6.5005 -2.4413 2.7054 25 9 6.9334 -0.1983 2.6886 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8465 -0.8900 31 1 3.8501 0.5594 0.8362 32 1 3.9784 2.1754 0.1013 33 1 2.8458 4.1011 -1.3027 34 1 3.9196 -1.2337 -2.3131 35 1 3.6269 -1.3702 -0.5626 36 1 6.1322 -1.2492 -3.1930 37 1 9.1991 -0.7967 -3.4565 38 1 9.5918 -2.4388 -2.8932 39 1 8.2212 -2.1815 -3.9993 40 1 9.4164 -1.8652 -0.5423 41 1 7.9222 -1.5536 1.3885 42 1 5.1692 -1.0169 3.3051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453594060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:52 Heat of formation + Delta-G solvation = -148.401466 kcal Electronic energy + Delta-G solvation = -28021.267017 eV Core-core repulsion = 23830.994075 eV Total energy + Delta-G solvation = -4190.272942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.24970 -48.24231 -41.05647 -38.76837 -38.51893 -37.07030 -34.06769 -32.70367 -31.91269 -30.19034 -28.15036 -27.37956 -27.02785 -26.11810 -24.62995 -23.40282 -22.33554 -21.40460 -19.78310 -19.00572 -18.82441 -18.56899 -17.25341 -17.00002 -16.64057 -16.33638 -16.20542 -15.85498 -15.66167 -15.45787 -15.18421 -14.99769 -14.72341 -14.68010 -14.56764 -14.27827 -14.20224 -13.89973 -13.44319 -13.26803 -13.17238 -12.90780 -12.76359 -12.54537 -12.51699 -12.38458 -12.18484 -12.09642 -11.82057 -11.75268 -11.62155 -11.40264 -10.65359 -10.05601 -9.74842 -9.06294 -8.65261 -7.63000 -5.11328 0.44109 0.47622 1.50466 1.51135 1.56922 1.81120 2.55270 2.59077 2.80472 3.34871 3.41612 3.56878 3.76709 3.87157 3.90188 3.94803 4.09513 4.36238 4.42572 4.57838 4.62828 4.65227 4.73036 4.81875 4.84907 4.90006 4.91179 5.02513 5.03947 5.12417 5.24953 5.29954 5.40733 5.53896 5.59337 5.74189 5.84561 5.86082 5.95395 6.27110 6.41427 6.73206 7.30129 7.97845 8.39901 9.28981 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.006153 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.629820 B = 4549.255322 C = 6095.767082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.419 6.419 3 C 0.078 3.922 4 C 0.189 3.811 5 N -0.594 5.594 6 C -0.231 4.231 7 H 0.072 0.928 8 C -0.063 4.063 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.286 1.286 14 C 0.201 3.799 15 C -0.115 4.115 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.104 4.104 19 C -0.099 4.099 20 C -0.198 4.198 21 C 0.092 3.908 22 O -0.324 6.324 23 C 0.404 3.596 24 F -0.207 7.207 25 F -0.212 7.212 26 H 0.040 0.960 27 H 0.023 0.977 28 H 0.094 0.906 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 -10.294 5.252 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.338 6.338 3 C 0.000 4.000 4 C 0.064 3.936 5 N -0.314 5.314 6 C -0.361 4.361 7 H 0.090 0.910 8 C -0.254 4.254 9 N -0.586 5.586 10 Si 0.797 3.203 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.212 1.212 14 C 0.074 3.926 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.160 4.160 19 C -0.118 4.118 20 C -0.216 4.216 21 C 0.049 3.951 22 O -0.242 6.242 23 C 0.314 3.686 24 F -0.189 7.189 25 F -0.194 7.194 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.113 0.887 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.781 -10.260 5.257 12.896 hybrid contribution -0.082 1.213 -0.478 1.306 sum 5.698 -9.047 4.779 11.711 Atomic orbital electron populations 1.22683 0.81855 1.02514 0.99157 1.87806 1.19614 1.31073 1.95347 1.23632 0.96533 0.81303 0.98546 1.20843 0.90452 0.97183 0.85169 1.44122 1.77102 1.01825 1.08388 1.19593 1.30044 0.93119 0.93361 0.90974 1.25387 1.01119 0.98792 1.00145 1.70297 1.45503 1.13784 1.28974 0.85327 0.77340 0.77921 0.79734 1.20980 1.22271 1.21226 1.19544 0.88898 0.84710 0.99420 1.20464 1.00081 1.00956 0.90291 1.20940 0.93179 0.98764 0.98016 1.20201 0.94245 1.01118 0.96163 1.20745 0.98165 1.02546 0.94546 1.21034 1.00190 0.99466 0.91068 1.21568 0.92106 1.06802 1.01170 1.18813 0.89559 0.99927 0.86847 1.86705 1.37422 1.86485 1.13543 1.24097 0.85357 0.71547 0.87559 1.93053 1.87594 1.42815 1.95463 1.93057 1.66313 1.64330 1.95661 0.94157 0.95832 0.88715 0.96908 0.92452 0.95237 0.90562 0.94710 0.93609 0.92535 0.85465 0.91146 0.89823 0.90965 0.83281 0.84860 0.76166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 11.01 113.37 1.25 2.43 16 2 O -0.42 -18.41 10.30 -148.98 -1.53 -19.95 16 3 C 0.08 3.72 5.38 71.98 0.39 4.11 16 4 C 0.19 9.43 5.33 86.38 0.46 9.89 16 5 N -0.59 -29.89 2.49 -706.33 -1.76 -31.64 16 6 C -0.23 -12.44 9.77 84.03 0.82 -11.62 16 7 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 8 C -0.06 -3.40 5.27 84.86 0.45 -2.95 16 9 N -0.93 -52.03 7.24 21.65 0.16 -51.87 16 10 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 C 0.20 8.80 5.42 85.63 0.46 9.26 16 15 C -0.11 -4.55 5.44 -19.77 -0.11 -4.66 16 16 C -0.09 -3.19 9.32 22.25 0.21 -2.98 16 17 C -0.12 -3.48 5.88 -19.85 -0.12 -3.60 16 18 C -0.10 -2.24 10.01 71.24 0.71 -1.53 16 19 C -0.10 -2.88 9.69 22.26 0.22 -2.67 16 20 C -0.20 -6.47 8.26 22.37 0.18 -6.29 16 21 C 0.09 3.44 6.46 22.50 0.15 3.58 16 22 O -0.32 -11.34 7.68 -92.42 -0.71 -12.05 16 23 C 0.40 10.30 5.98 113.37 0.68 10.98 16 24 F -0.21 -5.34 15.60 44.97 0.70 -4.64 16 25 F -0.21 -6.13 15.57 44.97 0.70 -5.43 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 3.15 6.05 -2.39 -0.01 3.13 16 31 H 0.03 1.39 6.02 -2.39 -0.01 1.37 16 32 H 0.08 4.28 5.96 -2.39 -0.01 4.26 16 33 H 0.24 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.05 1.97 7.98 -2.39 -0.02 1.95 16 35 H 0.06 2.50 7.34 -2.39 -0.02 2.49 16 36 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.07 1.44 8.08 -2.38 -0.02 1.42 16 40 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.13 4.01 5.10 -2.91 -0.01 4.00 16 42 H 0.22 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -64.82 348.68 6.36 -58.46 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.03 Total: 16.13 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.75 Total: 3.95 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.60 Total: -83.51 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -2.24 Total: -32.00 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 1.40 Total: -10.07 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.82 6.36 -58.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453594060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.943 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds