Wall clock time and date at job start Tue Mar 31 2020 11:17:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.38089 * 119.85247 * 2 1
4 4 C 1.39665 * 120.14552 * 179.97438 * 3 2 1
5 5 C 1.47855 * 120.07807 * 179.72378 * 4 3 2
6 6 O 1.21548 * 119.99979 * 0.02562 * 5 4 3
7 7 N 1.34782 * 120.00427 * 180.02562 * 5 4 3
8 8 C 1.46498 * 120.00159 * 180.02562 * 7 5 4
9 9 C 1.50703 * 109.46916 * 180.02562 * 8 7 5
10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7
11 11 C 1.37872 * 119.99523 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00260 * 359.97438 * 11 9 8
13 13 Si 1.86801 * 119.99859 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47080 * 359.97438 * 13 11 9
15 15 H 1.48500 * 109.47377 * 119.99914 * 13 11 9
16 16 H 1.48504 * 109.47282 * 240.00432 * 13 11 9
17 17 C 1.39338 * 119.85196 * 0.02562 * 4 3 2
18 18 C 1.39300 * 119.70637 * 0.02562 * 17 4 3
19 19 C 1.47856 * 120.07508 * 179.97438 * 18 17 4
20 20 O 1.21549 * 120.00261 * 180.02562 * 19 18 17
21 21 N 1.34783 * 119.99919 * 0.02562 * 19 18 17
22 22 C 1.46502 * 120.00013 * 179.97438 * 21 19 18
23 23 C 1.53000 * 109.47057 * 179.97438 * 22 21 19
24 24 C 1.47197 * 109.47053 * 179.97438 * 23 22 21
25 25 N 9.60828 * 143.20576 * 179.97438 * 2 1 3
26 26 C 1.38056 * 119.84797 * 179.97438 * 2 1 3
27 27 H 1.09003 * 109.46794 * 89.99457 * 1 2 3
28 28 H 1.09000 * 109.47153 * 209.99805 * 1 2 3
29 29 H 1.09000 * 109.46561 * 330.00469 * 1 2 3
30 30 H 1.08004 * 119.93052 * 359.96003 * 3 2 1
31 31 H 0.96994 * 119.99369 * 359.97438 * 7 5 4
32 32 H 1.09005 * 109.46843 * 299.99640 * 8 7 5
33 33 H 1.08996 * 109.47456 * 59.99429 * 8 7 5
34 34 H 0.97010 * 119.99686 * 179.97438 * 12 11 9
35 35 H 1.07996 * 120.14850 * 180.02562 * 17 4 3
36 36 H 0.96994 * 119.99671 * 0.02562 * 21 19 18
37 37 H 1.09007 * 109.46865 * 300.00120 * 22 21 19
38 38 H 1.08999 * 109.47022 * 59.99897 * 22 21 19
39 39 H 1.08997 * 109.47087 * 300.00212 * 23 22 21
40 40 H 1.08997 * 109.46731 * 60.00004 * 23 22 21
41 41 H 1.08008 * 119.92778 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1944 1.1977 0.0000
4 6 3.5911 1.2048 0.0005
5 6 4.3255 2.4880 -0.0056
6 8 3.7139 3.5383 -0.0107
7 7 5.6734 2.4932 -0.0056
8 6 6.4010 3.7646 -0.0112
9 6 7.8837 3.4948 -0.0106
10 1 8.2476 2.4780 -0.0061
11 6 8.7756 4.5462 -0.0158
12 7 8.3325 5.7844 -0.0218
13 14 10.6134 4.2119 -0.0144
14 1 10.8499 2.7458 -0.0066
15 1 11.2257 4.8061 -1.2298
16 1 11.2259 4.8178 1.1952
17 6 4.2908 -0.0001 0.0005
18 6 3.5912 -1.2047 -0.0005
19 6 4.3255 -2.4880 -0.0011
20 8 3.7137 -3.5383 -0.0025
21 7 5.6733 -2.4933 -0.0001
22 6 6.4009 -3.7649 -0.0001
23 6 7.9062 -3.4911 0.0005
24 6 8.6372 -4.7687 0.0012
25 7 9.2013 -5.7548 0.0026
26 6 2.1942 -1.1974 0.0005
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3632 0.8901 0.5138
30 1 1.6509 2.1309 -0.0007
31 1 6.1614 1.6550 -0.0012
32 1 6.1355 4.3313 -0.9037
33 1 6.1355 4.3392 0.8762
34 1 8.9602 6.5241 -0.0251
35 1 5.3708 -0.0002 0.0014
36 1 6.1615 -1.6552 0.0014
37 1 6.1346 -4.3358 0.8895
38 1 6.1360 -4.3350 -0.8905
39 1 8.1720 -2.9204 -0.8892
40 1 8.1713 -2.9208 0.8908
41 1 1.6505 -2.1307 0.0005
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000487514688.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:27
Heat of formation + Delta-G solvation = -33.987596 kcal
Electronic energy + Delta-G solvation = -24536.446148 eV
Core-core repulsion = 20801.823750 eV
Total energy + Delta-G solvation = -3734.622398 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.63587 -39.40769 -37.99980 -37.29460 -35.49503 -34.44888 -33.39331 -32.42117
-31.71280 -30.94562 -27.70881 -26.93243 -25.26046 -23.93163 -23.05807 -22.14885
-20.66150 -19.73501 -18.44563 -17.81192 -16.90082 -16.46646 -16.30010 -16.22641
-15.66989 -15.46486 -14.97511 -14.78729 -14.66873 -14.53026 -14.12084 -13.82345
-13.78663 -13.41039 -13.24185 -13.05374 -12.87867 -12.40024 -12.25006 -12.11268
-12.07911 -11.80278 -11.73469 -11.69962 -11.66966 -11.05643 -10.99891 -10.43175
-10.30035 -9.55487 -9.50142 -9.34232 -9.08887 -8.96096 -8.84824 -8.03798
-6.26309 -4.34169 0.60669 0.87333 2.22372 2.39233 2.49488 2.74078
3.16654 3.23335 3.25991 3.26888 3.66324 3.82137 3.95216 4.21200
4.25768 4.42200 4.48152 4.51750 4.72423 4.87084 5.02785 5.06096
5.09760 5.10497 5.29688 5.29863 5.43357 5.43790 5.56300 5.65820
5.83569 5.92040 5.99135 6.15802 6.30490 6.61147 7.05761 7.16334
7.18246 7.23851 7.39643 7.52862 7.85432 7.85462 8.43213 8.64097
8.89405 9.32698 10.83849
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.006901 B = 0.004369 C = 0.002683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4056.319334 B = 6407.573532 C =10432.835070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.102 4.102
3 C -0.038 4.038
4 C -0.121 4.121
5 C 0.539 3.461
6 O -0.547 6.547
7 N -0.703 5.703
8 C 0.248 3.752
9 C -0.545 4.545
10 H 0.064 0.936
11 C 0.065 3.935
12 N -0.883 5.883
13 Si 0.904 3.096
14 H -0.272 1.272
15 H -0.282 1.282
16 H -0.282 1.282
17 C -0.061 4.061
18 C -0.143 4.143
19 C 0.568 3.432
20 O -0.535 6.535
21 N -0.729 5.729
22 C 0.125 3.875
23 C -0.041 4.041
24 C 0.211 3.789
25 N -0.428 5.428
26 C -0.044 4.044
27 H 0.073 0.927
28 H 0.069 0.931
29 H 0.071 0.929
30 H 0.142 0.858
31 H 0.388 0.612
32 H 0.030 0.970
33 H 0.030 0.970
34 H 0.266 0.734
35 H 0.130 0.870
36 H 0.406 0.594
37 H 0.079 0.921
38 H 0.079 0.921
39 H 0.121 0.879
40 H 0.121 0.879
41 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.666 -15.240 0.050 17.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.102 4.102
3 C -0.057 4.057
4 C -0.125 4.125
5 C 0.324 3.676
6 O -0.426 6.426
7 N -0.351 5.351
8 C 0.128 3.872
9 C -0.584 4.584
10 H 0.082 0.918
11 C -0.139 4.139
12 N -0.520 5.520
13 Si 0.731 3.269
14 H -0.196 1.196
15 H -0.208 1.208
16 H -0.208 1.208
17 C -0.080 4.080
18 C -0.146 4.146
19 C 0.356 3.644
20 O -0.412 6.412
21 N -0.382 5.382
22 C 0.000 4.000
23 C -0.081 4.081
24 C -0.108 4.108
25 N -0.104 5.104
26 C -0.063 4.063
27 H 0.092 0.908
28 H 0.088 0.912
29 H 0.090 0.910
30 H 0.159 0.841
31 H 0.221 0.779
32 H 0.048 0.952
33 H 0.048 0.952
34 H 0.076 0.924
35 H 0.148 0.852
36 H 0.243 0.757
37 H 0.098 0.902
38 H 0.098 0.902
39 H 0.139 0.861
40 H 0.139 0.861
41 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -8.557 -16.505 0.046 18.592
hybrid contribution 1.490 0.427 -0.003 1.550
sum -7.067 -16.078 0.043 17.563
Atomic orbital electron populations
1.20806 0.90197 1.03233 1.02771 1.19868 0.96769 0.92324 1.01257
1.21435 0.92916 0.98542 0.92775 1.20211 0.94484 0.93637 1.04125
1.18176 0.83159 0.87999 0.78302 1.90749 1.68134 1.32732 1.51034
1.46416 1.04990 1.12104 1.71606 1.19191 0.90282 0.79672 0.98062
1.21204 0.90206 0.93329 1.53636 0.91800 1.24942 0.99565 0.94811
0.94580 1.69977 1.35098 0.98386 1.48569 0.86370 0.84294 0.78425
0.77844 1.19604 1.20774 1.20779 1.21452 0.99598 0.91127 0.95870
1.19675 0.94373 0.92168 1.08345 1.18184 0.81628 0.88889 0.75676
1.90783 1.67943 1.33007 1.49516 1.45785 1.06468 1.09537 1.76431
1.21174 0.88340 0.86386 1.04079 1.19430 0.92636 0.88770 1.07274
1.28699 0.94099 0.94534 0.93440 1.81279 1.09091 1.11413 1.08635
1.21249 0.92460 0.98408 0.94177 0.90809 0.91211 0.91008 0.84067
0.77856 0.95211 0.95212 0.92383 0.85193 0.75743 0.90222 0.90223
0.86131 0.86141 0.84412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.86 10.00 36.01 0.36 -0.50 16
2 C -0.10 -1.06 5.87 -104.74 -0.61 -1.67 16
3 C -0.04 -0.47 9.24 -39.10 -0.36 -0.84 16
4 C -0.12 -1.69 5.87 -105.02 -0.62 -2.31 16
5 C 0.54 10.00 7.77 -12.32 -0.10 9.91 16
6 O -0.55 -12.36 16.34 5.32 0.09 -12.27 16
7 N -0.70 -13.28 5.50 -62.43 -0.34 -13.62 16
8 C 0.25 6.08 5.43 -5.19 -0.03 6.06 16
9 C -0.55 -13.59 9.28 -34.44 -0.32 -13.91 16
10 H 0.06 1.44 7.60 -52.49 -0.40 1.04 16
11 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16
12 N -0.88 -24.74 13.29 55.43 0.74 -24.00 16
13 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16
14 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16
15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16
17 C -0.06 -0.67 9.03 -38.78 -0.35 -1.02 16
18 C -0.14 -1.52 5.87 -105.02 -0.62 -2.14 16
19 C 0.57 5.97 7.77 -12.32 -0.10 5.87 16
20 O -0.54 -7.26 16.34 5.32 0.09 -7.17 16
21 N -0.73 -5.08 5.51 -61.24 -0.34 -5.42 16
22 C 0.13 0.73 5.63 -4.04 -0.02 0.71 16
23 C -0.04 -0.15 5.82 -29.52 -0.17 -0.32 16
24 C 0.21 1.61 15.43 -20.76 -0.32 1.28 16
25 N -0.43 -4.80 18.54 42.15 0.78 -4.02 16
26 C -0.04 -0.46 9.23 -39.10 -0.36 -0.82 16
27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16
29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16
30 H 0.14 1.81 7.64 -52.48 -0.40 1.41 16
31 H 0.39 5.85 6.35 -40.82 -0.26 5.59 16
32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16
33 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16
34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16
35 H 0.13 1.09 4.74 -52.49 -0.25 0.84 16
36 H 0.41 1.96 6.50 -40.82 -0.27 1.69 16
37 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16
38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
39 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16
40 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16
41 H 0.14 1.35 7.64 -52.48 -0.40 0.95 16
LS Contribution 365.99 15.07 5.52 5.52
Total: -1.00 -35.10 365.99 -7.11 -42.22
By element:
Atomic # 1 Polarization: 7.31 SS G_CDS: -4.91 Total: 2.40 kcal
Atomic # 6 Polarization: 5.60 SS G_CDS: -3.71 Total: 1.89 kcal
Atomic # 7 Polarization: -47.90 SS G_CDS: 0.84 Total: -47.06 kcal
Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.44 kcal
Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -35.10 -7.11 -42.22 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000487514688.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.229 kcal
(2) G-P(sol) polarization free energy of solvation -35.105 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.988 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds