Wall clock time and date at job start Tue Mar 31 2020 11:17:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.38089 * 119.85247 * 2 1
4 4 C 1.39665 * 120.14552 * 179.97438 * 3 2 1
5 5 C 1.47855 * 120.07807 * 179.72378 * 4 3 2
6 6 O 1.21548 * 119.99979 * 0.02562 * 5 4 3
7 7 N 1.34782 * 120.00427 * 180.02562 * 5 4 3
8 8 C 1.46498 * 120.00159 * 180.02562 * 7 5 4
9 9 C 1.50703 * 109.46916 * 180.02562 * 8 7 5
10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7
11 11 C 1.37872 * 119.99523 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00260 * 359.97438 * 11 9 8
13 13 Si 1.86801 * 119.99859 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47080 * 359.97438 * 13 11 9
15 15 H 1.48500 * 109.47377 * 119.99914 * 13 11 9
16 16 H 1.48504 * 109.47282 * 240.00432 * 13 11 9
17 17 C 1.39338 * 119.85196 * 0.02562 * 4 3 2
18 18 C 1.39300 * 119.70637 * 0.02562 * 17 4 3
19 19 C 1.47856 * 120.07508 * 179.97438 * 18 17 4
20 20 O 1.21549 * 120.00261 * 180.02562 * 19 18 17
21 21 N 1.34783 * 119.99919 * 0.02562 * 19 18 17
22 22 C 1.46502 * 120.00013 * 179.97438 * 21 19 18
23 23 C 1.53000 * 109.47057 * 179.97438 * 22 21 19
24 24 C 1.47197 * 109.47053 * 179.97438 * 23 22 21
25 25 N 9.60828 * 143.20576 * 179.97438 * 2 1 3
26 26 C 1.38056 * 119.84797 * 179.97438 * 2 1 3
27 27 H 1.09003 * 109.46794 * 89.99457 * 1 2 3
28 28 H 1.09000 * 109.47153 * 209.99805 * 1 2 3
29 29 H 1.09000 * 109.46561 * 330.00469 * 1 2 3
30 30 H 1.08004 * 119.93052 * 359.96003 * 3 2 1
31 31 H 0.96994 * 119.99369 * 359.97438 * 7 5 4
32 32 H 1.09005 * 109.46843 * 299.99640 * 8 7 5
33 33 H 1.08996 * 109.47456 * 59.99429 * 8 7 5
34 34 H 0.97010 * 119.99686 * 179.97438 * 12 11 9
35 35 H 1.07996 * 120.14850 * 180.02562 * 17 4 3
36 36 H 0.96994 * 119.99671 * 0.02562 * 21 19 18
37 37 H 1.09007 * 109.46865 * 300.00120 * 22 21 19
38 38 H 1.08999 * 109.47022 * 59.99897 * 22 21 19
39 39 H 1.08997 * 109.47087 * 300.00212 * 23 22 21
40 40 H 1.08997 * 109.46731 * 60.00004 * 23 22 21
41 41 H 1.08008 * 119.92778 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1944 1.1977 0.0000
4 6 3.5911 1.2048 0.0005
5 6 4.3255 2.4880 -0.0056
6 8 3.7139 3.5383 -0.0107
7 7 5.6734 2.4932 -0.0056
8 6 6.4010 3.7646 -0.0112
9 6 7.8837 3.4948 -0.0106
10 1 8.2476 2.4780 -0.0061
11 6 8.7756 4.5462 -0.0158
12 7 8.3325 5.7844 -0.0218
13 14 10.6134 4.2119 -0.0144
14 1 10.8499 2.7458 -0.0066
15 1 11.2257 4.8061 -1.2298
16 1 11.2259 4.8178 1.1952
17 6 4.2908 -0.0001 0.0005
18 6 3.5912 -1.2047 -0.0005
19 6 4.3255 -2.4880 -0.0011
20 8 3.7137 -3.5383 -0.0025
21 7 5.6733 -2.4933 -0.0001
22 6 6.4009 -3.7649 -0.0001
23 6 7.9062 -3.4911 0.0005
24 6 8.6372 -4.7687 0.0012
25 7 9.2013 -5.7548 0.0026
26 6 2.1942 -1.1974 0.0005
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3632 0.8901 0.5138
30 1 1.6509 2.1309 -0.0007
31 1 6.1614 1.6550 -0.0012
32 1 6.1355 4.3313 -0.9037
33 1 6.1355 4.3392 0.8762
34 1 8.9602 6.5241 -0.0251
35 1 5.3708 -0.0002 0.0014
36 1 6.1615 -1.6552 0.0014
37 1 6.1346 -4.3358 0.8895
38 1 6.1360 -4.3350 -0.8905
39 1 8.1720 -2.9204 -0.8892
40 1 8.1713 -2.9208 0.8908
41 1 1.6505 -2.1307 0.0005
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000487514688.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:26
Heat of formation + Delta-G solvation = -59.178226 kcal
Electronic energy + Delta-G solvation = -24537.538495 eV
Core-core repulsion = 20801.823750 eV
Total energy + Delta-G solvation = -3735.714745 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.57970 -40.57648 -39.12397 -37.96120 -36.24986 -36.15311 -34.60206 -33.88241
-32.67514 -31.63525 -29.38434 -27.83226 -26.06550 -25.33605 -23.77031 -23.70793
-21.41109 -21.20775 -19.47476 -18.62008 -18.15528 -17.52921 -17.19108 -16.96029
-16.81863 -16.78989 -16.20844 -16.18366 -15.61386 -15.57720 -15.28984 -14.78732
-14.58344 -14.38722 -14.10438 -13.93513 -13.91307 -13.83159 -13.63188 -13.09328
-12.83925 -12.83290 -12.70668 -12.67674 -12.61845 -12.49918 -12.16039 -12.14328
-11.40480 -11.22303 -10.87485 -10.77592 -10.29349 -10.07117 -9.83501 -9.72738
-8.23454 -6.39489 -0.34183 -0.05880 1.50385 1.50526 1.54727 1.62491
1.63499 1.83446 2.11639 2.12811 2.31060 2.53130 2.85235 3.13319
3.16188 3.53306 3.65556 3.73577 3.90637 4.10205 4.18660 4.19779
4.22192 4.43636 4.57091 4.66835 4.83353 4.87722 4.94162 5.00373
5.06735 5.14507 5.21790 5.26743 5.28821 5.33517 5.45717 5.50015
5.69384 5.75321 5.88734 6.43938 6.61341 6.70376 6.86383 7.13664
7.27679 7.44098 8.89006
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.006901 B = 0.004369 C = 0.002683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4056.319334 B = 6407.573532 C =10432.835070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.095 4.095
3 C -0.047 4.047
4 C -0.140 4.140
5 C 0.539 3.461
6 O -0.597 6.597
7 N -0.694 5.694
8 C 0.264 3.736
9 C -0.549 4.549
10 H 0.095 0.905
11 C 0.004 3.996
12 N -0.934 5.934
13 Si 0.981 3.019
14 H -0.242 1.242
15 H -0.285 1.285
16 H -0.285 1.285
17 C -0.045 4.045
18 C -0.142 4.142
19 C 0.569 3.431
20 O -0.569 6.569
21 N -0.711 5.711
22 C 0.125 3.875
23 C -0.031 4.031
24 C 0.240 3.760
25 N -0.498 5.498
26 C -0.039 4.039
27 H 0.085 0.915
28 H 0.086 0.914
29 H 0.074 0.926
30 H 0.131 0.869
31 H 0.409 0.591
32 H -0.010 1.010
33 H -0.010 1.010
34 H 0.267 0.733
35 H 0.157 0.843
36 H 0.419 0.581
37 H 0.073 0.927
38 H 0.073 0.927
39 H 0.149 0.851
40 H 0.149 0.851
41 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.716 -17.463 0.054 19.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.095 4.095
3 C -0.066 4.066
4 C -0.143 4.143
5 C 0.327 3.673
6 O -0.480 6.480
7 N -0.344 5.344
8 C 0.141 3.859
9 C -0.587 4.587
10 H 0.113 0.887
11 C -0.196 4.196
12 N -0.572 5.572
13 Si 0.805 3.195
14 H -0.165 1.165
15 H -0.211 1.211
16 H -0.212 1.212
17 C -0.065 4.065
18 C -0.145 4.145
19 C 0.357 3.643
20 O -0.449 6.449
21 N -0.364 5.364
22 C 0.000 4.000
23 C -0.071 4.071
24 C -0.077 4.077
25 N -0.176 5.176
26 C -0.059 4.059
27 H 0.103 0.897
28 H 0.104 0.896
29 H 0.093 0.907
30 H 0.149 0.851
31 H 0.247 0.753
32 H 0.008 0.992
33 H 0.008 0.992
34 H 0.075 0.925
35 H 0.175 0.825
36 H 0.258 0.742
37 H 0.092 0.908
38 H 0.092 0.908
39 H 0.166 0.834
40 H 0.166 0.834
41 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -7.581 -18.779 0.051 20.252
hybrid contribution 1.055 1.107 -0.005 1.529
sum -6.525 -17.673 0.046 18.839
Atomic orbital electron populations
1.20892 0.88115 1.04250 1.03798 1.20061 0.98194 0.91227 0.99982
1.21479 0.92608 0.99220 0.93338 1.19791 0.94733 0.92077 1.07728
1.18854 0.82822 0.89199 0.76434 1.90717 1.69028 1.35157 1.53055
1.46045 1.05278 1.11148 1.71921 1.18635 0.91446 0.81386 0.94387
1.21665 0.89930 0.94760 1.52367 0.88696 1.26035 1.05101 0.94410
0.94019 1.70151 1.37040 0.99773 1.50277 0.85163 0.77400 0.79793
0.77181 1.16489 1.21143 1.21154 1.21549 1.00793 0.89829 0.94294
1.19759 0.94602 0.92185 1.07923 1.18112 0.82576 0.88058 0.75590
1.90780 1.68845 1.33861 1.51416 1.45649 1.05427 1.10700 1.74618
1.21192 0.89553 0.85656 1.03613 1.19623 0.90354 0.87138 1.09937
1.29333 0.92712 0.94408 0.91244 1.81312 1.11488 1.13598 1.11229
1.21512 0.92750 0.98805 0.92784 0.89691 0.89565 0.90676 0.85100
0.75306 0.99238 0.99234 0.92452 0.82526 0.74190 0.90826 0.90832
0.83361 0.83366 0.83278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.49 10.00 71.24 0.71 -0.77 16
2 C -0.09 -1.79 5.87 -19.94 -0.12 -1.91 16
3 C -0.05 -1.17 9.24 22.58 0.21 -0.96 16
4 C -0.14 -3.79 5.87 -20.12 -0.12 -3.91 16
5 C 0.54 20.34 7.77 86.79 0.67 21.01 16
6 O -0.60 -28.36 16.34 -3.87 -0.06 -28.43 16
7 N -0.69 -26.04 5.50 -469.69 -2.58 -28.62 16
8 C 0.26 13.34 5.43 85.63 0.46 13.81 16
9 C -0.55 -26.89 9.28 25.60 0.24 -26.66 16
10 H 0.10 3.95 7.60 -2.91 -0.02 3.92 16
11 C 0.00 0.20 5.46 84.65 0.46 0.66 16
12 N -0.93 -53.67 13.29 21.44 0.28 -53.39 16
13 Si 0.98 38.87 29.54 68.60 2.03 40.90 16
14 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16
15 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16
16 H -0.29 -11.41 7.11 99.48 0.71 -10.70 16
17 C -0.05 -0.87 9.03 22.79 0.21 -0.67 16
18 C -0.14 -2.63 5.87 -20.12 -0.12 -2.75 16
19 C 0.57 10.26 7.77 86.79 0.67 10.94 16
20 O -0.57 -14.17 16.34 -3.87 -0.06 -14.24 16
21 N -0.71 -7.20 5.51 -465.94 -2.57 -9.76 16
22 C 0.12 1.04 5.63 86.38 0.49 1.53 16
23 C -0.03 -0.10 5.82 28.79 0.17 0.07 16
24 C 0.24 3.10 15.43 89.44 1.38 4.48 16
25 N -0.50 -10.77 18.54 20.01 0.37 -10.40 16
26 C -0.04 -0.73 9.23 22.58 0.21 -0.53 16
27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16
29 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16
30 H 0.13 3.46 7.64 -2.91 -0.02 3.44 16
31 H 0.41 11.38 6.35 -92.71 -0.59 10.79 16
32 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16
33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
34 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16
35 H 0.16 1.99 4.74 -2.91 -0.01 1.98 16
36 H 0.42 2.00 6.50 -92.71 -0.60 1.40 16
37 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
39 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16
40 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16
41 H 0.15 2.50 7.64 -2.91 -0.02 2.48 16
Total: -1.00 -81.36 365.99 2.84 -78.52
By element:
Atomic # 1 Polarization: 11.17 SS G_CDS: -0.10 Total: 11.07 kcal
Atomic # 6 Polarization: 8.82 SS G_CDS: 5.53 Total: 14.35 kcal
Atomic # 7 Polarization: -97.68 SS G_CDS: -4.49 Total: -102.17 kcal
Atomic # 8 Polarization: -42.54 SS G_CDS: -0.13 Total: -42.66 kcal
Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal
Total: -81.36 2.84 -78.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000487514688.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.338 kcal
(2) G-P(sol) polarization free energy of solvation -81.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.020 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.178 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds