Wall clock time and date at job start Tue Mar 31 2020 11:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47208 * 13.83858 * 3 2 1 5 5 C 1.37098 * 119.99772 * 263.60206 * 4 3 2 6 6 H 1.08002 * 120.00143 * 201.51244 * 5 4 3 7 7 C 1.38949 * 119.99979 * 21.51805 * 5 4 3 8 8 N 1.31414 * 119.99785 * 18.13856 * 7 5 4 9 9 Si 1.86801 * 120.00069 * 198.13610 * 7 5 4 10 10 H 1.48497 * 109.47115 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46917 * 119.99817 * 9 7 5 12 12 H 1.48496 * 109.47071 * 240.00113 * 9 7 5 13 13 C 1.34775 * 120.00117 * 83.60624 * 4 3 2 14 14 O 1.21296 * 120.00047 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00149 * 359.97438 * 13 4 3 16 16 N 1.46502 * 109.47189 * 180.02562 * 15 13 4 17 17 C 1.34775 * 119.99955 * 179.97438 * 16 15 13 18 18 O 1.21590 * 120.00126 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99702 * 180.02562 * 17 16 15 20 20 C 1.39948 * 119.99653 * 185.12045 * 19 17 16 21 21 C 1.38894 * 120.06656 * 213.29001 * 20 19 17 22 22 C 1.38097 * 119.92378 * 180.29853 * 21 20 19 23 23 C 1.38296 * 120.07299 * 359.44626 * 22 21 20 24 24 C 1.38260 * 120.14098 * 0.29814 * 23 22 21 25 25 C 1.50704 * 119.96556 * 179.97438 * 24 23 22 26 26 C 1.38132 * 120.07044 * 359.97438 * 24 23 22 27 27 H 4.40642 * 5.51469 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47173 * 253.83781 * 3 2 1 29 29 H 1.09004 * 109.47295 * 133.83503 * 3 2 1 30 30 H 0.96998 * 119.99730 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47209 * 59.99848 * 15 13 4 32 32 H 1.08998 * 109.47194 * 299.99976 * 15 13 4 33 33 H 0.97003 * 120.00131 * 0.02562 * 16 15 13 34 34 H 0.96998 * 120.00593 * 5.11912 * 19 17 16 35 35 H 1.07993 * 120.03916 * 0.02562 * 21 20 19 36 36 H 1.08002 * 119.95647 * 179.72401 * 22 21 20 37 37 H 1.08003 * 119.92904 * 180.27188 * 23 22 21 38 38 H 1.08996 * 109.46770 * 90.00061 * 25 24 23 39 39 H 1.08998 * 109.46856 * 210.00076 * 25 24 23 40 40 H 1.08998 * 109.46949 * 329.99818 * 25 24 23 41 41 H 1.07999 * 120.03960 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3402 -0.3304 5 6 3.4885 -2.2070 0.6713 6 1 4.1549 -3.0308 0.4623 7 6 2.9895 -2.0255 1.9553 8 7 1.9292 -1.2736 2.1480 9 14 3.8259 -2.8506 3.4077 10 1 4.9904 -3.6368 2.9271 11 1 4.2899 -1.8149 4.3655 12 1 2.8627 -3.7554 4.0850 13 6 3.2372 -1.7217 -1.6189 14 8 3.6425 -2.8318 -1.8925 15 6 2.8480 -0.7692 -2.7200 16 7 3.0483 -1.4163 -4.0190 17 6 2.7638 -0.7494 -5.1551 18 8 2.3414 0.3896 -5.1019 19 7 2.9476 -1.3449 -6.3501 20 6 2.7551 -0.6186 -7.5307 21 6 2.2628 -1.2517 -8.6648 22 6 2.0798 -0.5335 -9.8300 23 6 2.3753 0.8171 -9.8653 24 6 2.8605 1.4513 -8.7366 25 6 3.1817 2.9231 -8.7797 26 6 3.0511 0.7374 -7.5696 27 1 -1.0499 -0.0004 -0.0003 28 1 3.0091 0.2869 0.9870 29 1 3.0090 0.7126 -0.7413 30 1 1.5806 -1.1472 3.0443 31 1 3.4661 0.1266 -2.6607 32 1 1.7990 -0.4948 -2.6091 33 1 3.3850 -2.3251 -4.0614 34 1 3.2133 -2.2768 -6.3919 35 1 2.0276 -2.3053 -8.6366 36 1 1.7013 -1.0262 -10.7134 37 1 2.2271 1.3775 -10.7766 38 1 2.2979 3.4962 -8.4995 39 1 3.9909 3.1389 -8.0821 40 1 3.4887 3.1986 -9.7886 41 1 3.4305 1.2333 -6.6883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:05 Heat of formation + Delta-G solvation = 34.332077 kcal Electronic energy + Delta-G solvation = -25039.533450 eV Core-core repulsion = 21307.873615 eV Total energy + Delta-G solvation = -3731.659834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.62132 -39.12697 -38.42387 -35.50820 -34.94374 -34.04849 -32.48212 -32.18062 -31.31272 -29.83445 -27.55713 -26.99272 -26.36288 -24.37602 -22.86838 -21.52927 -20.65073 -19.51749 -18.45015 -17.96769 -17.24443 -16.67786 -16.29869 -15.94772 -15.65565 -15.09461 -14.94585 -14.61586 -14.40155 -14.13086 -13.85544 -13.78532 -13.52807 -13.17575 -13.02266 -12.47217 -12.43520 -12.23375 -12.10129 -11.85655 -11.65419 -11.62395 -11.26631 -11.09368 -10.57283 -10.42282 -10.33162 -10.02815 -9.42521 -9.37349 -9.00768 -8.87400 -8.75856 -8.64529 -8.06828 -7.97905 -6.41659 -4.00955 1.25172 1.36639 2.63375 3.06640 3.18897 3.20373 3.26270 3.54933 3.78631 3.80452 4.02038 4.10391 4.27756 4.75825 4.79935 4.80484 4.96143 5.08693 5.20066 5.27357 5.40381 5.50133 5.52652 5.60237 5.64590 5.76253 5.83353 5.96046 6.00704 6.23520 6.27177 6.30477 6.45418 6.55201 6.63455 6.65902 6.97230 6.98822 7.04452 7.46121 7.90755 8.04438 8.27477 8.61171 8.78698 8.97753 9.20391 9.70625 10.57949 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.002593 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.996663 B =10794.729616 C =11258.968861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.118 4.118 3 C 0.229 3.771 4 N -0.429 5.429 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.858 5.858 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.441 3.559 14 O -0.584 6.584 15 C 0.125 3.875 16 N -0.719 5.719 17 C 0.704 3.296 18 O -0.577 6.577 19 N -0.689 5.689 20 C 0.178 3.822 21 C -0.159 4.159 22 C -0.097 4.097 23 C -0.145 4.145 24 C -0.068 4.068 25 C -0.113 4.113 26 C -0.122 4.122 27 H 0.199 0.801 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.408 0.592 34 H 0.408 0.592 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 4.954 -17.525 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.120 4.120 3 C 0.106 3.894 4 N -0.147 5.147 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.495 5.495 9 Si 0.751 3.249 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.229 3.771 14 O -0.469 6.469 15 C -0.002 4.002 16 N -0.376 5.376 17 C 0.404 3.596 18 O -0.455 6.455 19 N -0.336 5.336 20 C 0.083 3.917 21 C -0.179 4.179 22 C -0.116 4.116 23 C -0.164 4.164 24 C -0.069 4.069 25 C -0.170 4.170 26 C -0.143 4.143 27 H 0.217 0.783 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.998 5.483 -17.264 18.141 hybrid contribution 0.058 -1.330 1.004 1.667 sum 1.056 4.152 -16.261 16.816 Atomic orbital electron populations 1.24276 0.95388 1.02119 1.05347 1.23020 0.94249 0.98328 0.96356 1.18295 0.84518 0.84437 1.02146 1.43610 1.54994 1.11905 1.04144 1.19696 1.26993 1.10935 0.86817 0.87741 1.25383 0.94891 0.97541 0.99375 1.70059 1.18527 1.38210 1.22754 0.85887 0.79428 0.78936 0.80598 1.19165 1.20514 1.20793 1.19913 0.85273 0.88048 0.83880 1.90500 1.51947 1.22153 1.82338 1.20975 1.02654 0.95436 0.81182 1.44824 1.69659 1.19199 1.03925 1.15830 0.78882 0.84773 0.80144 1.90931 1.51359 1.17121 1.86058 1.42637 1.72557 1.15051 1.03400 1.17510 0.97247 0.91886 0.85060 1.20844 1.03399 1.00585 0.93114 1.20851 0.99411 0.94136 0.97202 1.20950 1.02543 0.94781 0.98125 1.19799 0.97995 0.96162 0.92953 1.20781 1.02070 0.91730 1.02384 1.21118 1.01629 0.93095 0.98428 0.78350 0.87145 0.91647 0.91969 0.89881 0.89438 0.75446 0.75679 0.85868 0.85887 0.86276 0.91022 0.91466 0.91656 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.23 19.25 29.55 0.57 -4.66 16 2 C -0.12 -2.61 10.69 -37.12 -0.40 -3.00 16 3 C 0.23 4.90 4.91 -6.83 -0.03 4.87 16 4 N -0.43 -10.35 2.60 -117.94 -0.31 -10.66 16 5 C -0.32 -8.34 9.27 -14.93 -0.14 -8.48 16 6 H 0.10 2.88 7.43 -52.49 -0.39 2.49 16 7 C 0.03 0.84 4.92 -17.47 -0.09 0.75 16 8 N -0.86 -21.84 9.45 55.50 0.52 -21.32 16 9 Si 0.93 19.78 29.59 -169.99 -5.03 14.75 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.44 10.12 7.63 -10.99 -0.08 10.03 16 14 O -0.58 -14.81 15.35 5.54 0.09 -14.72 16 15 C 0.13 2.37 4.76 -5.19 -0.02 2.35 16 16 N -0.72 -12.11 5.53 -66.42 -0.37 -12.47 16 17 C 0.70 11.55 8.31 -86.92 -0.72 10.83 16 18 O -0.58 -11.15 14.00 5.29 0.07 -11.07 16 19 N -0.69 -8.91 5.35 -14.22 -0.08 -8.99 16 20 C 0.18 2.33 6.29 -83.68 -0.53 1.80 16 21 C -0.16 -1.70 9.96 -39.39 -0.39 -2.09 16 22 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 23 C -0.15 -1.45 9.70 -39.55 -0.38 -1.83 16 24 C -0.07 -0.78 5.88 -104.65 -0.62 -1.40 16 25 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 26 C -0.12 -1.67 8.31 -39.39 -0.33 -2.00 16 27 H 0.20 3.38 7.80 -54.10 -0.42 2.96 16 28 H 0.11 2.47 6.60 -51.93 -0.34 2.12 16 29 H 0.07 1.17 6.71 -51.93 -0.35 0.82 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 32 H 0.09 1.72 7.47 -51.93 -0.39 1.34 16 33 H 0.41 6.56 7.46 -40.82 -0.30 6.26 16 34 H 0.41 4.03 8.83 -40.82 -0.36 3.67 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 41 H 0.14 2.11 6.39 -52.49 -0.34 1.77 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -31.80 355.99 -7.87 -39.67 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -4.94 Total: 14.27 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -3.20 Total: 5.18 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.23 Total: -53.43 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.16 Total: -25.79 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.80 -7.87 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.999 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds