Wall clock time and date at job start Tue Mar 31 2020 11:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47208 * 13.83858 * 3 2 1 5 5 C 1.37098 * 119.99772 * 263.60206 * 4 3 2 6 6 H 1.08002 * 120.00143 * 201.51244 * 5 4 3 7 7 C 1.38949 * 119.99979 * 21.51805 * 5 4 3 8 8 N 1.31414 * 119.99785 * 18.13856 * 7 5 4 9 9 Si 1.86801 * 120.00069 * 198.13610 * 7 5 4 10 10 H 1.48497 * 109.47115 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46917 * 119.99817 * 9 7 5 12 12 H 1.48496 * 109.47071 * 240.00113 * 9 7 5 13 13 C 1.34775 * 120.00117 * 83.60624 * 4 3 2 14 14 O 1.21296 * 120.00047 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00149 * 359.97438 * 13 4 3 16 16 N 1.46502 * 109.47189 * 180.02562 * 15 13 4 17 17 C 1.34775 * 119.99955 * 179.97438 * 16 15 13 18 18 O 1.21590 * 120.00126 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99702 * 180.02562 * 17 16 15 20 20 C 1.39948 * 119.99653 * 185.12045 * 19 17 16 21 21 C 1.38894 * 120.06656 * 213.29001 * 20 19 17 22 22 C 1.38097 * 119.92378 * 180.29853 * 21 20 19 23 23 C 1.38296 * 120.07299 * 359.44626 * 22 21 20 24 24 C 1.38260 * 120.14098 * 0.29814 * 23 22 21 25 25 C 1.50704 * 119.96556 * 179.97438 * 24 23 22 26 26 C 1.38132 * 120.07044 * 359.97438 * 24 23 22 27 27 H 4.40642 * 5.51469 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47173 * 253.83781 * 3 2 1 29 29 H 1.09004 * 109.47295 * 133.83503 * 3 2 1 30 30 H 0.96998 * 119.99730 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47209 * 59.99848 * 15 13 4 32 32 H 1.08998 * 109.47194 * 299.99976 * 15 13 4 33 33 H 0.97003 * 120.00131 * 0.02562 * 16 15 13 34 34 H 0.96998 * 120.00593 * 5.11912 * 19 17 16 35 35 H 1.07993 * 120.03916 * 0.02562 * 21 20 19 36 36 H 1.08002 * 119.95647 * 179.72401 * 22 21 20 37 37 H 1.08003 * 119.92904 * 180.27188 * 23 22 21 38 38 H 1.08996 * 109.46770 * 90.00061 * 25 24 23 39 39 H 1.08998 * 109.46856 * 210.00076 * 25 24 23 40 40 H 1.08998 * 109.46949 * 329.99818 * 25 24 23 41 41 H 1.07999 * 120.03960 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3402 -0.3304 5 6 3.4885 -2.2070 0.6713 6 1 4.1549 -3.0308 0.4623 7 6 2.9895 -2.0255 1.9553 8 7 1.9292 -1.2736 2.1480 9 14 3.8259 -2.8506 3.4077 10 1 4.9904 -3.6368 2.9271 11 1 4.2899 -1.8149 4.3655 12 1 2.8627 -3.7554 4.0850 13 6 3.2372 -1.7217 -1.6189 14 8 3.6425 -2.8318 -1.8925 15 6 2.8480 -0.7692 -2.7200 16 7 3.0483 -1.4163 -4.0190 17 6 2.7638 -0.7494 -5.1551 18 8 2.3414 0.3896 -5.1019 19 7 2.9476 -1.3449 -6.3501 20 6 2.7551 -0.6186 -7.5307 21 6 2.2628 -1.2517 -8.6648 22 6 2.0798 -0.5335 -9.8300 23 6 2.3753 0.8171 -9.8653 24 6 2.8605 1.4513 -8.7366 25 6 3.1817 2.9231 -8.7797 26 6 3.0511 0.7374 -7.5696 27 1 -1.0499 -0.0004 -0.0003 28 1 3.0091 0.2869 0.9870 29 1 3.0090 0.7126 -0.7413 30 1 1.5806 -1.1472 3.0443 31 1 3.4661 0.1266 -2.6607 32 1 1.7990 -0.4948 -2.6091 33 1 3.3850 -2.3251 -4.0614 34 1 3.2133 -2.2768 -6.3919 35 1 2.0276 -2.3053 -8.6366 36 1 1.7013 -1.0262 -10.7134 37 1 2.2271 1.3775 -10.7766 38 1 2.2979 3.4962 -8.4995 39 1 3.9909 3.1389 -8.0821 40 1 3.4887 3.1986 -9.7886 41 1 3.4305 1.2333 -6.6883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:03 Heat of formation + Delta-G solvation = 14.409369 kcal Electronic energy + Delta-G solvation = -25040.397363 eV Core-core repulsion = 21307.873615 eV Total energy + Delta-G solvation = -3732.523748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81060 -40.65939 -39.65512 -37.27850 -36.05704 -35.53815 -34.03297 -33.28185 -33.08023 -30.88903 -29.07653 -28.08338 -27.76842 -26.14847 -23.89886 -22.43841 -21.83318 -21.20066 -19.80561 -19.70658 -18.45252 -18.25394 -17.72137 -17.21083 -16.93799 -16.54336 -16.32352 -16.15473 -15.87522 -15.53015 -15.21439 -14.76702 -14.57843 -14.50007 -14.19959 -13.97773 -13.82241 -13.64183 -13.47924 -13.18721 -12.99782 -12.80708 -12.51569 -12.46156 -12.13724 -12.08371 -11.48159 -11.24095 -11.17562 -11.12026 -10.72306 -10.49698 -10.27804 -9.87390 -9.61215 -9.01467 -8.32882 -6.00111 0.37919 0.50417 1.33743 1.38832 1.46073 1.57967 1.78242 1.95813 2.08962 2.31515 2.37707 2.91142 2.98442 3.03357 3.17591 3.79003 3.92128 3.96639 4.06408 4.26336 4.29776 4.37878 4.45534 4.50298 4.64200 4.65889 4.83219 4.87246 4.91943 4.98825 5.16308 5.24998 5.37980 5.39652 5.44904 5.45346 5.60145 5.75968 5.88172 6.01032 6.16540 6.36079 6.84646 7.06193 7.12720 7.29854 7.36887 7.83617 8.64755 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.002593 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.996663 B =10794.729616 C =11258.968861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.155 4.155 3 C 0.231 3.769 4 N -0.440 5.440 5 C -0.350 4.350 6 H 0.081 0.919 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.988 3.012 10 H -0.272 1.272 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.437 3.563 14 O -0.615 6.615 15 C 0.142 3.858 16 N -0.718 5.718 17 C 0.705 3.295 18 O -0.608 6.608 19 N -0.674 5.674 20 C 0.151 3.849 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.143 4.143 24 C -0.080 4.080 25 C -0.112 4.112 26 C -0.149 4.149 27 H 0.231 0.769 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.273 0.727 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.422 0.578 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 5.114 -19.210 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.157 4.157 3 C 0.108 3.892 4 N -0.157 5.157 5 C -0.477 4.477 6 H 0.099 0.901 7 C -0.200 4.200 8 N -0.507 5.507 9 Si 0.812 3.188 10 H -0.196 1.196 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.226 3.774 14 O -0.502 6.502 15 C 0.014 3.986 16 N -0.375 5.375 17 C 0.405 3.595 18 O -0.488 6.488 19 N -0.323 5.323 20 C 0.056 3.944 21 C -0.178 4.178 22 C -0.113 4.113 23 C -0.161 4.161 24 C -0.081 4.081 25 C -0.169 4.169 26 C -0.170 4.170 27 H 0.248 0.752 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.260 0.740 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.313 5.646 -18.985 19.809 hybrid contribution 0.217 -1.366 1.416 1.979 sum 0.530 4.280 -17.568 18.090 Atomic orbital electron populations 1.25123 0.96389 1.00639 1.03992 1.23361 0.94966 0.99685 0.97651 1.18359 0.84644 0.83719 1.02429 1.43775 1.55072 1.12663 1.04237 1.19633 1.28074 1.11654 0.88327 0.90101 1.26061 0.95094 0.97935 1.00955 1.70153 1.18805 1.38414 1.23322 0.84959 0.78147 0.78139 0.77549 1.19614 1.19139 1.20779 1.20495 0.84223 0.88258 0.84403 1.90466 1.53118 1.23667 1.82956 1.20702 1.02367 0.94801 0.80752 1.44709 1.70043 1.19314 1.03476 1.15888 0.78552 0.84345 0.80715 1.90909 1.52795 1.18501 1.86591 1.42437 1.71802 1.15620 1.02428 1.17789 0.99003 0.92008 0.85590 1.21141 1.02415 1.01746 0.92518 1.21301 0.98093 0.94096 0.97789 1.21340 1.01046 0.95279 0.98451 1.20100 0.97961 0.97236 0.92766 1.20820 1.01944 0.90453 1.03674 1.21089 1.03438 0.93851 0.98598 0.75247 0.88484 0.88509 0.91705 0.88446 0.89932 0.75005 0.74027 0.83712 0.82581 0.83431 0.90904 0.92104 0.89312 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.79 19.25 74.32 1.43 -8.36 16 2 C -0.16 -6.82 10.69 31.12 0.33 -6.49 16 3 C 0.23 9.96 4.91 84.57 0.41 10.38 16 4 N -0.44 -21.68 2.60 -645.42 -1.68 -23.36 16 5 C -0.35 -18.84 9.27 84.04 0.78 -18.06 16 6 H 0.08 4.65 7.43 -2.91 -0.02 4.62 16 7 C 0.00 0.18 4.92 84.93 0.42 0.60 16 8 N -0.87 -44.23 9.45 21.66 0.20 -44.02 16 9 Si 0.99 40.73 29.59 68.60 2.03 42.76 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.44 20.48 7.63 87.66 0.67 21.15 16 14 O -0.61 -32.02 15.35 -3.08 -0.05 -32.07 16 15 C 0.14 5.43 4.76 85.63 0.41 5.83 16 16 N -0.72 -24.41 5.53 -482.30 -2.67 -27.08 16 17 C 0.70 23.38 8.31 179.05 1.49 24.87 16 18 O -0.61 -23.99 14.00 -4.00 -0.06 -24.05 16 19 N -0.67 -17.32 5.35 -317.16 -1.70 -19.02 16 20 C 0.15 3.85 6.29 38.15 0.24 4.09 16 21 C -0.16 -3.04 9.96 22.39 0.22 -2.82 16 22 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 23 C -0.14 -2.44 9.70 22.29 0.22 -2.23 16 24 C -0.08 -1.75 5.88 -19.88 -0.12 -1.87 16 25 C -0.11 -1.92 10.01 71.24 0.71 -1.20 16 26 C -0.15 -4.14 8.31 22.39 0.19 -3.95 16 27 H 0.23 7.31 7.80 -4.42 -0.03 7.28 16 28 H 0.10 4.40 6.60 -2.39 -0.02 4.38 16 29 H 0.10 3.45 6.71 -2.39 -0.02 3.43 16 30 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.10 3.43 7.42 -2.39 -0.02 3.41 16 32 H 0.08 3.27 7.47 -2.39 -0.02 3.25 16 33 H 0.41 13.42 7.46 -92.71 -0.69 12.72 16 34 H 0.42 8.08 8.83 -92.71 -0.82 7.26 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 40 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 41 H 0.11 3.60 6.39 -2.91 -0.02 3.58 16 Total: -1.00 -69.83 355.99 3.28 -66.55 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.43 Total: 39.63 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 7.62 Total: 20.65 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.84 Total: -113.48 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.10 Total: -56.12 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -69.83 3.28 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.960 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds