Wall clock time and date at job start Tue Mar 31 2020 11:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37948 * 120.05883 * 2 1 4 4 C 1.38560 * 120.11810 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.87533 * 179.97438 * 4 3 2 6 6 C 1.38596 * 120.24707 * 0.02562 * 4 3 2 7 7 C 1.37901 * 120.11861 * 359.69827 * 6 4 3 8 8 C 1.39569 * 120.06490 * 180.02562 * 2 1 3 9 9 C 1.47794 * 120.12056 * 359.95765 * 8 2 1 10 10 C 1.35946 * 125.93235 * 129.99502 * 9 8 2 11 11 C 1.40948 * 106.74222 * 180.02562 * 10 9 8 12 12 C 1.34721 * 107.03317 * 0.02562 * 11 10 9 13 13 C 1.50699 * 125.66959 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.46904 * 89.99867 * 13 12 11 15 15 C 1.36931 * 119.99694 * 90.00297 * 14 13 12 16 16 H 1.08006 * 120.00246 * 218.05610 * 15 14 13 17 17 C 1.38808 * 120.00450 * 38.05430 * 15 14 13 18 18 N 1.31623 * 119.99906 * 20.57430 * 17 15 14 19 19 Si 1.86797 * 120.00624 * 200.57164 * 17 15 14 20 20 H 1.48503 * 109.47082 * 59.99916 * 19 17 15 21 21 H 1.48503 * 109.47433 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47043 * 300.00236 * 19 17 15 23 23 C 1.46496 * 120.00340 * 270.00481 * 14 13 12 24 24 C 1.52995 * 117.50235 * 193.92407 * 23 14 13 25 25 C 1.52996 * 117.50263 * 125.26280 * 23 14 13 26 26 O 1.34331 * 108.66940 * 0.02562 * 12 11 10 27 27 H 1.09007 * 109.47006 * 269.97567 * 1 2 3 28 28 H 1.08996 * 109.47357 * 29.97932 * 1 2 3 29 29 H 1.08996 * 109.46745 * 149.98286 * 1 2 3 30 30 H 1.07996 * 119.93986 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.94216 * 180.02562 * 6 4 3 32 32 H 1.08002 * 120.05942 * 180.28059 * 7 6 4 33 33 H 1.08002 * 126.63013 * 0.04349 * 10 9 8 34 34 H 1.07996 * 126.48633 * 180.02562 * 11 10 9 35 35 H 1.08992 * 109.47640 * 210.00039 * 13 12 11 36 36 H 1.08997 * 109.47016 * 330.00624 * 13 12 11 37 37 H 0.97001 * 120.00573 * 174.96493 * 18 17 15 38 38 H 1.09002 * 115.54850 * 339.60042 * 23 14 13 39 39 H 1.09001 * 117.49510 * 0.02562 * 24 23 14 40 40 H 1.09007 * 117.49822 * 145.01657 * 24 23 14 41 41 H 1.08996 * 117.50157 * 214.97991 * 25 23 14 42 42 H 1.09002 * 117.49647 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1940 0.0000 4 6 3.5835 1.1954 -0.0005 5 9 4.2553 2.3675 -0.0011 6 6 4.2829 -0.0012 -0.0016 7 6 3.6023 -1.2005 0.0041 8 6 2.2062 -1.2079 -0.0005 9 6 1.4714 -2.4902 -0.0002 10 6 1.6880 -3.5341 -0.8437 11 6 0.7676 -4.5408 -0.4886 12 6 0.0422 -4.0664 0.5426 13 6 -1.0648 -4.8037 1.2511 14 7 -0.5051 -5.5683 2.3685 15 6 -0.4045 -4.9950 3.6079 16 1 0.4559 -5.1978 4.2285 17 6 -1.4081 -4.1531 4.0669 18 7 -2.6101 -4.2102 3.5335 19 14 -1.0532 -2.9393 5.4416 20 1 0.0263 -2.0121 5.0169 21 1 -2.2820 -2.1628 5.7460 22 1 -0.6219 -3.6782 6.6554 23 6 -0.0532 -6.9461 2.1599 24 6 0.2127 -7.7983 3.4024 25 6 1.3838 -7.2865 2.5600 26 8 0.4694 -2.8267 0.8346 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6579 2.1292 0.0004 31 1 5.3628 0.0057 -0.0016 32 1 4.1483 -2.1323 0.0079 33 1 2.4235 -3.5828 -1.6331 34 1 0.6636 -5.5093 -0.9550 35 1 -1.7940 -4.0877 1.6299 36 1 -1.5525 -5.4844 0.5534 37 1 -3.3302 -3.6749 3.9020 38 1 -0.4639 -7.4480 1.2838 39 1 0.0509 -7.3338 4.3751 40 1 -0.0229 -8.8609 3.3437 41 1 1.9182 -8.0127 1.9475 42 1 1.9930 -6.4852 2.9781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000511973339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:08 Heat of formation + Delta-G solvation = 37.292979 kcal Electronic energy + Delta-G solvation = -25888.158008 eV Core-core repulsion = 22136.706606 eV Total energy + Delta-G solvation = -3751.451402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.97993 -41.86530 -39.06120 -37.08736 -33.74706 -32.90403 -32.49970 -31.83532 -30.63544 -28.37775 -27.08006 -25.30271 -23.74546 -22.73490 -21.53964 -21.40661 -20.84977 -19.98806 -19.62123 -17.39471 -17.06903 -16.58532 -16.34745 -15.69173 -15.61758 -15.23116 -14.54758 -14.43122 -13.98325 -13.92505 -13.65347 -13.51451 -13.34192 -12.91788 -12.86282 -12.27609 -12.24589 -12.11582 -11.90582 -11.79785 -11.52722 -11.15009 -11.08266 -10.88106 -10.86660 -10.63410 -10.30965 -10.11089 -9.74641 -9.40020 -9.34537 -9.03700 -8.78722 -8.55279 -7.48757 -6.65117 -5.97828 -3.53703 0.86275 1.14784 2.37195 3.16980 3.31350 3.35408 3.36065 3.41373 3.76296 4.13710 4.35619 4.63494 4.71878 4.88299 4.94308 5.03333 5.19824 5.24512 5.28978 5.53902 5.55756 5.69734 5.74826 5.76534 5.82393 5.84180 5.99838 6.05342 6.12182 6.15387 6.21932 6.27685 6.35323 6.44915 6.47032 6.54809 6.59686 6.72916 6.85468 6.93131 7.08599 7.13287 7.33618 7.71425 7.91970 8.37251 8.98786 9.61231 10.16263 11.04778 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004238 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.051766 B = 6604.944687 C = 7498.609965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.156 4.156 4 C 0.100 3.900 5 F -0.142 7.142 6 C -0.160 4.160 7 C -0.065 4.065 8 C -0.012 4.012 9 C -0.017 4.017 10 C -0.180 4.180 11 C -0.242 4.242 12 C 0.036 3.964 13 C 0.206 3.794 14 N -0.536 5.536 15 C -0.266 4.266 16 H 0.063 0.937 17 C 0.024 3.976 18 N -0.885 5.885 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.126 3.874 24 C -0.192 4.192 25 C -0.224 4.224 26 O -0.153 6.153 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 5.261 -9.237 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.175 4.175 4 C 0.081 3.919 5 F -0.121 7.121 6 C -0.179 4.179 7 C -0.084 4.084 8 C -0.013 4.013 9 C -0.067 4.067 10 C -0.199 4.199 11 C -0.263 4.263 12 C -0.019 4.019 13 C 0.079 3.921 14 N -0.251 5.251 15 C -0.395 4.395 16 H 0.080 0.920 17 C -0.177 4.177 18 N -0.526 5.526 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.231 4.231 25 C -0.265 4.265 26 O -0.047 6.047 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.421 5.657 -8.979 12.950 hybrid contribution 0.686 0.650 0.641 1.142 sum 8.106 6.307 -8.338 13.229 Atomic orbital electron populations 1.20862 0.89792 1.03099 1.03609 1.19954 0.96860 0.91101 0.95545 1.20906 0.92133 0.99091 1.05382 1.17749 0.90126 0.81147 1.02918 1.91484 1.80539 1.46097 1.93942 1.20969 1.00747 0.90870 1.05308 1.21039 0.92437 0.97945 0.96941 1.17751 0.91924 0.89110 1.02467 1.20016 0.95192 0.95366 0.96147 1.21589 1.02745 0.93534 1.02071 1.21354 1.01219 1.01205 1.02481 1.24976 0.99861 0.82026 0.95067 1.19779 0.90123 0.94295 0.87898 1.43311 1.70524 1.06069 1.05193 1.18875 1.02457 1.24783 0.93384 0.91972 1.25189 0.94368 1.00329 0.97850 1.69843 0.99787 1.41016 1.41958 0.86418 0.77557 0.81515 0.81703 1.20458 1.21310 1.20516 1.21134 0.94290 0.86769 0.96115 1.23085 1.03631 0.97947 0.98416 1.23339 0.93865 1.03351 1.05913 1.84239 1.40886 1.30935 1.48686 0.89965 0.91336 0.90561 0.84528 0.84486 0.84475 0.84491 0.84360 0.86915 0.91487 0.92922 0.89193 0.88222 0.90644 0.90843 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.24 36.00 0.33 -1.28 16 2 C -0.03 -0.50 5.91 -104.23 -0.62 -1.11 16 3 C -0.16 -2.00 9.67 -39.57 -0.38 -2.38 16 4 C 0.10 1.27 7.30 -39.33 -0.29 0.98 16 5 F -0.14 -1.80 17.26 2.25 0.04 -1.76 16 6 C -0.16 -1.91 10.01 -39.57 -0.40 -2.31 16 7 C -0.07 -0.87 9.70 -39.19 -0.38 -1.25 16 8 C -0.01 -0.19 5.79 -104.98 -0.61 -0.80 16 9 C -0.02 -0.31 5.53 -36.50 -0.20 -0.51 16 10 C -0.18 -3.01 10.75 -39.38 -0.42 -3.43 16 11 C -0.24 -4.38 10.78 -39.80 -0.43 -4.81 16 12 C 0.04 0.74 6.90 -35.56 -0.25 0.50 16 13 C 0.21 4.58 5.86 -5.19 -0.03 4.55 16 14 N -0.54 -12.72 2.76 -167.03 -0.46 -13.18 16 15 C -0.27 -6.97 8.04 -15.06 -0.12 -7.09 16 16 H 0.06 1.67 7.23 -52.48 -0.38 1.29 16 17 C 0.02 0.64 4.97 -17.43 -0.09 0.55 16 18 N -0.89 -24.03 11.45 55.49 0.64 -23.40 16 19 Si 0.90 21.29 29.60 -169.99 -5.03 16.26 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.13 2.59 6.61 -67.94 -0.45 2.14 16 24 C -0.19 -3.74 9.81 -26.70 -0.26 -4.00 16 25 C -0.22 -4.25 10.09 -26.70 -0.27 -4.52 16 26 O -0.15 -3.25 9.78 4.59 0.04 -3.20 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.08 1.14 6.79 -51.93 -0.35 0.79 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.11 2.83 5.52 -51.93 -0.29 2.54 16 36 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.10 2.16 6.95 -51.93 -0.36 1.80 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.75 8.01 -51.93 -0.42 1.33 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -28.11 360.90 -9.76 -37.87 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.57 Total: 6.73 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -4.86 Total: -24.76 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.17 Total: -36.58 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.11 -9.76 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511973339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.166 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds