Wall clock time and date at job start Tue Mar 31 2020 11:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37948 * 120.05883 * 2 1 4 4 C 1.38560 * 120.11810 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.87533 * 179.97438 * 4 3 2 6 6 C 1.38596 * 120.24707 * 0.02562 * 4 3 2 7 7 C 1.37901 * 120.11861 * 359.69827 * 6 4 3 8 8 C 1.39569 * 120.06490 * 180.02562 * 2 1 3 9 9 C 1.47794 * 120.12056 * 359.95765 * 8 2 1 10 10 C 1.35946 * 125.93235 * 129.99502 * 9 8 2 11 11 C 1.40948 * 106.74222 * 180.02562 * 10 9 8 12 12 C 1.34721 * 107.03317 * 0.02562 * 11 10 9 13 13 C 1.50699 * 125.66959 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.46904 * 89.99867 * 13 12 11 15 15 C 1.36931 * 119.99694 * 90.00297 * 14 13 12 16 16 H 1.08006 * 120.00246 * 218.05610 * 15 14 13 17 17 C 1.38808 * 120.00450 * 38.05430 * 15 14 13 18 18 N 1.31623 * 119.99906 * 20.57430 * 17 15 14 19 19 Si 1.86797 * 120.00624 * 200.57164 * 17 15 14 20 20 H 1.48503 * 109.47082 * 59.99916 * 19 17 15 21 21 H 1.48503 * 109.47433 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47043 * 300.00236 * 19 17 15 23 23 C 1.46496 * 120.00340 * 270.00481 * 14 13 12 24 24 C 1.52995 * 117.50235 * 193.92407 * 23 14 13 25 25 C 1.52996 * 117.50263 * 125.26280 * 23 14 13 26 26 O 1.34331 * 108.66940 * 0.02562 * 12 11 10 27 27 H 1.09007 * 109.47006 * 269.97567 * 1 2 3 28 28 H 1.08996 * 109.47357 * 29.97932 * 1 2 3 29 29 H 1.08996 * 109.46745 * 149.98286 * 1 2 3 30 30 H 1.07996 * 119.93986 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.94216 * 180.02562 * 6 4 3 32 32 H 1.08002 * 120.05942 * 180.28059 * 7 6 4 33 33 H 1.08002 * 126.63013 * 0.04349 * 10 9 8 34 34 H 1.07996 * 126.48633 * 180.02562 * 11 10 9 35 35 H 1.08992 * 109.47640 * 210.00039 * 13 12 11 36 36 H 1.08997 * 109.47016 * 330.00624 * 13 12 11 37 37 H 0.97001 * 120.00573 * 174.96493 * 18 17 15 38 38 H 1.09002 * 115.54850 * 339.60042 * 23 14 13 39 39 H 1.09001 * 117.49510 * 0.02562 * 24 23 14 40 40 H 1.09007 * 117.49822 * 145.01657 * 24 23 14 41 41 H 1.08996 * 117.50157 * 214.97991 * 25 23 14 42 42 H 1.09002 * 117.49647 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1940 0.0000 4 6 3.5835 1.1954 -0.0005 5 9 4.2553 2.3675 -0.0011 6 6 4.2829 -0.0012 -0.0016 7 6 3.6023 -1.2005 0.0041 8 6 2.2062 -1.2079 -0.0005 9 6 1.4714 -2.4902 -0.0002 10 6 1.6880 -3.5341 -0.8437 11 6 0.7676 -4.5408 -0.4886 12 6 0.0422 -4.0664 0.5426 13 6 -1.0648 -4.8037 1.2511 14 7 -0.5051 -5.5683 2.3685 15 6 -0.4045 -4.9950 3.6079 16 1 0.4559 -5.1978 4.2285 17 6 -1.4081 -4.1531 4.0669 18 7 -2.6101 -4.2102 3.5335 19 14 -1.0532 -2.9393 5.4416 20 1 0.0263 -2.0121 5.0169 21 1 -2.2820 -2.1628 5.7460 22 1 -0.6219 -3.6782 6.6554 23 6 -0.0532 -6.9461 2.1599 24 6 0.2127 -7.7983 3.4024 25 6 1.3838 -7.2865 2.5600 26 8 0.4694 -2.8267 0.8346 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6579 2.1292 0.0004 31 1 5.3628 0.0057 -0.0016 32 1 4.1483 -2.1323 0.0079 33 1 2.4235 -3.5828 -1.6331 34 1 0.6636 -5.5093 -0.9550 35 1 -1.7940 -4.0877 1.6299 36 1 -1.5525 -5.4844 0.5534 37 1 -3.3302 -3.6749 3.9020 38 1 -0.4639 -7.4480 1.2838 39 1 0.0509 -7.3338 4.3751 40 1 -0.0229 -8.8609 3.3437 41 1 1.9182 -8.0127 1.9475 42 1 1.9930 -6.4852 2.9781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000511973339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:07 Heat of formation + Delta-G solvation = 26.073240 kcal Electronic energy + Delta-G solvation = -25888.644532 eV Core-core repulsion = 22136.706606 eV Total energy + Delta-G solvation = -3751.937926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.97773 -43.30879 -40.12224 -38.75643 -35.47656 -34.07562 -33.79871 -33.36946 -32.16158 -29.84040 -28.26329 -26.94137 -25.35566 -23.90545 -22.94842 -22.66443 -22.25740 -21.67886 -21.04589 -18.71946 -18.32803 -17.96047 -17.59132 -17.34211 -16.75576 -16.64497 -16.21288 -15.87757 -15.72316 -15.12734 -14.78339 -14.71722 -14.49473 -14.33143 -14.07643 -13.82492 -13.64660 -13.56299 -13.28122 -13.02528 -12.93554 -12.77734 -12.71405 -12.62573 -12.19518 -12.13218 -12.08449 -11.91167 -11.48227 -10.96572 -10.71284 -10.49698 -10.09335 -9.92095 -8.85103 -8.52126 -7.94293 -5.53745 -0.23801 0.14470 0.98104 1.37299 1.41810 1.47062 1.81040 2.09461 2.41733 2.58908 3.11884 3.12800 3.42549 3.53464 3.61705 3.70838 3.76527 4.06777 4.22514 4.26412 4.29298 4.31518 4.48395 4.50686 4.54835 4.62576 4.64760 4.69363 4.79251 4.95487 5.00103 5.02666 5.04482 5.05809 5.10215 5.14488 5.33278 5.36054 5.38312 5.50897 5.55473 5.64265 5.78016 5.82602 6.36570 6.50993 7.06076 7.73921 8.24097 9.03497 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004238 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.051766 B = 6604.944687 C = 7498.609965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.155 4.155 4 C 0.098 3.902 5 F -0.140 7.140 6 C -0.151 4.151 7 C -0.064 4.064 8 C -0.042 4.042 9 C -0.017 4.017 10 C -0.180 4.180 11 C -0.224 4.224 12 C -0.002 4.002 13 C 0.211 3.789 14 N -0.553 5.553 15 C -0.265 4.265 16 H 0.047 0.953 17 C -0.017 4.017 18 N -0.908 5.908 19 Si 0.945 3.055 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.105 3.895 24 C -0.191 4.191 25 C -0.205 4.205 26 O -0.185 6.185 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 5.229 -10.681 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.173 4.173 4 C 0.079 3.921 5 F -0.118 7.118 6 C -0.170 4.170 7 C -0.082 4.082 8 C -0.042 4.042 9 C -0.067 4.067 10 C -0.199 4.199 11 C -0.244 4.244 12 C -0.056 4.056 13 C 0.085 3.915 14 N -0.269 5.269 15 C -0.395 4.395 16 H 0.064 0.936 17 C -0.216 4.216 18 N -0.550 5.550 19 Si 0.773 3.227 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.002 4.002 24 C -0.229 4.229 25 C -0.246 4.246 26 O -0.082 6.082 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.188 0.812 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.575 5.608 -10.429 15.228 hybrid contribution 0.132 0.725 1.018 1.257 sum 9.707 6.333 -9.411 14.930 Atomic orbital electron populations 1.20810 0.90008 1.03576 1.02589 1.20037 0.96955 0.91519 0.96261 1.21081 0.92478 0.99260 1.04528 1.17898 0.90216 0.81525 1.02495 1.91495 1.80439 1.46045 1.93869 1.21259 1.02192 0.89918 1.03610 1.21217 0.91440 0.99226 0.96285 1.17972 0.93019 0.88508 1.04742 1.20615 0.94035 0.96634 0.95385 1.21933 1.03000 0.92540 1.02435 1.21624 0.99953 1.02009 1.00852 1.24590 1.01182 0.82699 0.97086 1.19520 0.90174 0.93968 0.87857 1.43449 1.71042 1.07666 1.04782 1.18875 1.01538 1.24790 0.94326 0.93564 1.25682 0.94412 1.01702 0.99810 1.69939 1.00180 1.41898 1.43032 0.85697 0.76988 0.79852 0.80143 1.21508 1.20972 1.19869 1.21440 0.95578 0.85674 0.97555 1.23078 1.03963 0.99284 0.96590 1.23263 0.92944 1.02963 1.05392 1.84182 1.42379 1.31469 1.50148 0.91755 0.88492 0.92431 0.82522 0.81554 0.82929 0.81227 0.82177 0.90395 0.89820 0.93312 0.86716 0.91219 0.87519 0.87431 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.24 71.23 0.66 -2.51 16 2 C -0.05 -1.34 5.91 -19.61 -0.12 -1.45 16 3 C -0.15 -3.67 9.67 22.28 0.22 -3.46 16 4 C 0.10 2.25 7.30 22.43 0.16 2.41 16 5 F -0.14 -3.17 17.26 44.97 0.78 -2.39 16 6 C -0.15 -3.16 10.01 22.28 0.22 -2.94 16 7 C -0.06 -1.54 9.70 22.52 0.22 -1.33 16 8 C -0.04 -1.27 5.79 -20.10 -0.12 -1.39 16 9 C -0.02 -0.61 5.53 24.27 0.13 -0.48 16 10 C -0.18 -5.71 10.75 22.40 0.24 -5.47 16 11 C -0.22 -7.81 10.78 22.13 0.24 -7.57 16 12 C 0.00 -0.08 6.90 24.88 0.17 0.09 16 13 C 0.21 9.67 5.86 85.63 0.50 10.17 16 14 N -0.55 -26.73 2.76 -682.37 -1.89 -28.62 16 15 C -0.27 -14.38 8.04 84.03 0.68 -13.70 16 16 H 0.05 2.60 7.23 -2.91 -0.02 2.58 16 17 C -0.02 -0.95 4.97 84.86 0.42 -0.53 16 18 N -0.91 -51.20 11.45 21.65 0.25 -50.95 16 19 Si 0.95 45.15 29.60 68.60 2.03 47.19 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 C 0.11 4.23 6.61 44.99 0.30 4.53 16 24 C -0.19 -7.22 9.81 30.62 0.30 -6.92 16 25 C -0.21 -7.46 10.09 30.62 0.31 -7.15 16 26 O -0.19 -8.13 9.78 -6.51 -0.06 -8.20 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 29 H 0.06 1.80 6.79 -2.39 -0.02 1.78 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.16 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.08 4.12 5.52 -2.39 -0.01 4.11 16 36 H 0.08 3.39 8.04 -2.39 -0.02 3.37 16 37 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 38 H 0.12 4.00 8.10 -2.39 -0.02 3.98 16 39 H 0.07 3.07 6.95 -2.39 -0.02 3.05 16 40 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 41 H 0.11 3.17 8.14 -2.39 -0.02 3.16 16 42 H 0.06 2.43 8.01 -2.39 -0.02 2.41 16 Total: -1.00 -62.84 360.90 6.67 -56.17 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.03 Total: 24.50 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.54 Total: -37.69 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.64 Total: -79.57 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.06 Total: -8.20 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.84 6.67 -56.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511973339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.243 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds