Wall clock time and date at job start Tue Mar 31 2020 10:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39834 * 120.07185 * 122.29725 * 3 2 1 5 5 C 1.37625 * 119.92121 * 180.02562 * 4 3 2 6 6 C 1.39194 * 120.08049 * 0.02667 * 5 4 3 7 7 N 1.39183 * 119.92944 * 179.97438 * 6 5 4 8 8 C 1.46848 * 111.00177 * 295.53050 * 7 6 5 9 9 C 1.53035 * 109.52470 * 185.83642 * 8 7 6 10 10 C 1.53110 * 109.28197 * 300.81771 * 9 8 7 11 11 C 1.52998 * 109.52600 * 177.55678 * 10 9 8 12 12 C 1.50702 * 109.46905 * 174.99807 * 11 10 9 13 13 H 1.07994 * 120.00334 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99616 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00025 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99700 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47322 * 90.00354 * 16 14 12 18 18 H 1.48502 * 109.47403 * 210.00217 * 16 14 12 19 19 H 1.48497 * 109.47501 * 330.00339 * 16 14 12 20 20 C 1.53125 * 109.15805 * 57.65321 * 10 9 8 21 21 C 1.46851 * 111.00155 * 59.73533 * 7 6 5 22 22 C 1.39158 * 120.14773 * 0.23337 * 6 5 4 23 23 N 1.48013 * 119.96381 * 179.72754 * 22 6 5 24 24 O 1.21802 * 120.00490 * 185.15283 * 23 22 6 25 25 O 1.21806 * 119.99793 * 5.15033 * 23 22 6 26 26 C 1.37674 * 120.07565 * 359.47912 * 22 6 5 27 27 H 1.07997 * 120.03797 * 0.04438 * 4 3 2 28 28 H 1.08003 * 119.96133 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46420 * 65.81823 * 8 7 6 30 30 H 1.09001 * 109.45774 * 305.85500 * 8 7 6 31 31 H 1.09000 * 109.49999 * 180.87273 * 9 8 7 32 32 H 1.09001 * 109.50272 * 60.76430 * 9 8 7 33 33 H 1.09001 * 109.52296 * 297.75328 * 10 9 8 34 34 H 1.08996 * 109.47636 * 294.99960 * 11 10 9 35 35 H 1.08998 * 109.46536 * 55.00512 * 11 10 9 36 36 H 0.97001 * 120.00020 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.50198 * 62.29461 * 20 10 9 38 38 H 1.09002 * 109.50126 * 182.40682 * 20 10 9 39 39 H 1.08999 * 109.46433 * 294.18324 * 21 7 6 40 40 H 1.09007 * 109.46028 * 54.14685 * 21 7 6 41 41 H 1.08000 * 120.04053 * 180.23711 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2684 0.6475 -1.0229 5 6 4.6446 0.6458 -1.0201 6 6 5.3394 0.0006 -0.0010 7 7 6.7312 0.0003 -0.0016 8 6 7.2569 -0.7292 -1.1626 9 6 8.7798 -0.8341 -1.0541 10 6 9.3807 0.5729 -0.9972 11 6 10.8981 0.4745 -0.8274 12 6 11.5016 1.8537 -0.8947 13 1 10.8665 2.7144 -1.0433 14 6 12.8648 2.0167 -0.7666 15 7 13.6382 0.9685 -0.5862 16 14 13.6128 3.7263 -0.8493 17 1 13.6652 4.3103 0.5150 18 1 14.9878 3.6388 -1.4034 19 1 12.7802 4.5891 -1.7254 20 6 8.7807 1.3280 0.1921 21 6 7.2578 1.3703 0.0474 22 6 4.6455 -0.6487 1.0155 23 7 5.3884 -1.3386 2.0939 24 8 4.7855 -1.9859 2.9312 25 8 6.6029 -1.2591 2.1440 26 6 3.2688 -0.6459 1.0221 27 1 2.7299 1.1482 -1.8140 28 1 5.1862 1.1456 -1.8096 29 1 6.9938 -0.1961 -2.0761 30 1 6.8248 -1.7296 -1.1889 31 1 9.1710 -1.3622 -1.9237 32 1 9.0433 -1.3794 -0.1478 33 1 9.1503 1.1050 -1.9202 34 1 11.1272 0.0244 0.1385 35 1 11.3134 -0.1431 -1.6238 36 1 14.5972 1.0831 -0.4964 37 1 9.0443 0.8169 1.1181 38 1 9.1726 2.3449 0.2128 39 1 6.9947 1.8937 -0.8718 40 1 6.8264 1.8949 0.9000 41 1 2.7309 -1.1467 1.8135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520401680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:44 Heat of formation + Delta-G solvation = 58.520663 kcal Electronic energy + Delta-G solvation = -25794.034515 eV Core-core repulsion = 22063.423577 eV Total energy + Delta-G solvation = -3730.610939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20732 -40.61269 -38.74099 -36.93936 -36.36222 -34.81488 -32.65398 -32.45514 -30.70087 -30.63879 -27.83740 -26.51081 -24.87574 -23.30646 -22.93279 -22.77930 -20.94249 -20.37548 -19.04693 -18.58007 -17.65429 -17.47237 -17.41153 -16.37556 -16.23308 -15.11230 -15.02480 -14.75339 -14.60446 -14.44237 -13.91219 -13.68331 -13.43516 -13.34371 -13.11370 -12.76932 -12.68305 -12.32267 -12.15383 -11.79721 -11.40394 -11.22689 -11.07688 -10.95880 -10.92026 -10.81075 -10.69702 -10.37081 -10.18652 -10.12761 -9.63926 -9.55522 -9.15867 -8.93820 -8.63208 -8.33973 -5.98881 -4.00724 -0.45516 -0.05379 1.12651 1.29691 2.06288 2.16705 2.99656 3.06491 3.29807 3.31203 3.38172 3.39519 3.93000 4.07407 4.21416 4.40261 4.45589 4.74286 4.88029 5.07331 5.10772 5.16426 5.26201 5.36503 5.39607 5.44473 5.59664 5.61494 5.72045 5.94808 6.04550 6.27759 6.35553 6.39404 6.55597 6.82222 6.82918 6.91599 7.01750 7.10700 7.14345 7.68264 7.75618 7.84634 8.01596 8.43160 9.05847 9.62934 11.12334 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.002975 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.181293 B = 9407.990445 C = 9998.836962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.254 3.746 3 C -0.036 4.036 4 C -0.013 4.013 5 C -0.154 4.154 6 C 0.201 3.799 7 N -0.502 5.502 8 C 0.067 3.933 9 C -0.112 4.112 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.100 4.100 21 C 0.063 3.937 22 C -0.032 4.032 23 N 0.024 4.976 24 O -0.201 6.201 25 O -0.074 6.074 26 C -0.006 4.006 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 -1.689 -1.461 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.062 4.062 3 C -0.040 4.040 4 C -0.034 4.034 5 C -0.175 4.175 6 C 0.103 3.897 7 N -0.224 5.224 8 C -0.058 4.058 9 C -0.149 4.149 10 C -0.099 4.099 11 C -0.009 4.009 12 C -0.554 4.554 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.116 4.116 23 N 0.548 4.452 24 O -0.403 6.403 25 O -0.309 6.309 26 C -0.028 4.028 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.430 -1.702 -1.491 22.544 hybrid contribution 0.822 1.174 -0.462 1.506 sum -21.608 -0.529 -1.953 21.702 Atomic orbital electron populations 1.81319 1.11615 1.07567 1.06750 1.25233 0.92064 0.94352 0.94523 1.15676 0.85059 1.05153 0.98118 1.21475 0.93984 0.92515 0.95455 1.21889 0.94210 1.01599 0.99825 1.19020 0.91962 0.89019 0.89657 1.59742 1.00098 1.18465 1.44090 1.22252 0.98132 0.96955 0.88425 1.21720 0.90937 0.99573 1.02713 1.21246 0.99189 0.92813 0.96671 1.19106 0.87527 0.96913 0.97337 1.21223 0.91871 0.93116 1.49222 0.92762 1.25011 0.97508 0.96393 0.95516 1.69956 1.04551 1.28945 1.49887 0.86673 0.78574 0.85002 0.78186 1.20704 1.21347 1.20038 1.21585 0.89639 1.02215 1.00282 1.22369 0.98724 0.84906 1.00140 1.20980 0.91415 1.06016 0.93220 1.43276 1.01687 0.99587 1.00662 1.94537 1.70615 1.40775 1.34324 1.94709 0.94151 1.63545 1.78489 1.20903 0.91244 0.93525 0.97125 0.83125 0.82578 0.94218 0.91405 0.91540 0.90566 0.92979 0.96196 0.96716 0.93050 0.90778 0.90296 0.94321 0.91196 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.05 18.54 41.84 0.78 -3.28 16 2 C 0.25 1.97 15.33 -22.48 -0.34 1.62 16 3 C -0.04 -0.22 5.74 -106.80 -0.61 -0.84 16 4 C -0.01 -0.06 9.75 -39.21 -0.38 -0.45 16 5 C -0.15 -1.00 8.66 -39.45 -0.34 -1.34 16 6 C 0.20 1.94 4.66 -83.83 -0.39 1.55 16 7 N -0.50 -6.02 2.49 -171.14 -0.43 -6.45 16 8 C 0.07 0.80 5.17 -3.83 -0.02 0.78 16 9 C -0.11 -1.69 5.38 -26.66 -0.14 -1.83 16 10 C -0.08 -1.45 2.20 -90.50 -0.20 -1.64 16 11 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 12 C -0.52 -13.63 8.45 -34.44 -0.29 -13.92 16 13 H 0.05 1.38 7.08 -52.49 -0.37 1.01 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 16 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.10 -1.63 5.15 -26.65 -0.14 -1.77 16 21 C 0.06 0.79 5.10 -3.83 -0.02 0.77 16 22 C -0.03 -0.33 6.85 -79.81 -0.55 -0.87 16 23 N 0.02 0.32 4.45 34.03 0.15 0.48 16 24 O -0.20 -2.83 18.45 -29.46 -0.54 -3.37 16 25 O -0.07 -1.15 17.11 -29.46 -0.50 -1.65 16 26 C -0.01 -0.05 9.25 -39.21 -0.36 -0.41 16 27 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 28 H 0.16 0.82 7.10 -52.48 -0.37 0.45 16 29 H 0.04 0.41 7.54 -51.93 -0.39 0.02 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.39 7.05 -51.93 -0.37 1.02 16 39 H 0.04 0.42 7.29 -51.93 -0.38 0.04 16 40 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 41 H 0.16 1.09 7.61 -52.49 -0.40 0.69 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -30.94 351.88 -8.76 -39.70 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -5.22 Total: -4.90 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.01 Total: -16.34 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.24 Total: -34.68 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -1.05 Total: -5.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.94 -8.76 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520401680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.223 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds