Wall clock time and date at job start Tue Mar 31 2020 10:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86807 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47002 * 83.58537 * 3 2 1 5 5 H 1.48496 * 109.47433 * 203.59077 * 3 2 1 6 6 H 1.48498 * 109.46521 * 323.58930 * 3 2 1 7 7 C 1.40033 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00169 * 36.55543 * 7 2 1 9 9 C 1.41540 * 120.00127 * 216.55381 * 7 2 1 10 10 C 1.41175 * 120.99683 * 356.78133 * 9 7 2 11 11 C 1.37595 * 119.01378 * 179.70266 * 10 9 7 12 12 N 1.32082 * 121.10944 * 0.58500 * 11 10 9 13 13 C 1.32467 * 122.23181 * 359.71478 * 12 11 10 14 14 N 1.39469 * 119.58015 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99798 * 5.44983 * 14 13 12 16 16 O 1.21280 * 120.00208 * 5.35047 * 15 14 13 17 17 C 1.50701 * 119.99813 * 185.35258 * 15 14 13 18 18 H 1.08993 * 110.86394 * 62.33394 * 17 15 14 19 19 C 1.54633 * 110.96839 * 298.54193 * 17 15 14 20 20 C 1.51280 * 104.19606 * 266.68395 * 19 17 15 21 21 O 1.21284 * 124.93808 * 163.78898 * 20 19 17 22 22 N 1.34415 * 110.11607 * 343.74521 * 20 19 17 23 23 C 1.46504 * 124.34820 * 179.57484 * 22 20 19 24 24 C 1.52999 * 117.49644 * 8.64664 * 23 22 20 25 25 C 1.52997 * 117.49723 * 300.02531 * 23 22 20 26 26 C 1.46756 * 111.30138 * 359.59291 * 22 20 19 27 27 C 1.38597 * 120.84157 * 359.97311 * 13 12 11 28 28 H 0.96996 * 119.99885 * 174.98772 * 1 2 3 29 29 H 1.08004 * 120.49241 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.44307 * 180.27835 * 11 10 9 31 31 H 0.96997 * 119.99809 * 185.45178 * 14 13 12 32 32 H 1.09002 * 110.48415 * 25.35819 * 19 17 15 33 33 H 1.09001 * 110.48719 * 147.87048 * 19 17 15 34 34 H 1.09001 * 115.54922 * 154.35140 * 23 22 20 35 35 H 1.08992 * 117.50253 * 0.02562 * 24 23 22 36 36 H 1.09002 * 117.49836 * 145.02519 * 24 23 22 37 37 H 1.09002 * 117.49831 * 214.98312 * 25 23 22 38 38 H 1.08998 * 117.50208 * 359.97438 * 25 23 22 39 39 H 1.08999 * 110.25054 * 258.01144 * 26 22 20 40 40 H 1.09008 * 110.24242 * 136.01663 * 26 22 20 41 41 H 1.07998 * 120.60285 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3535 2.1246 1.3913 5 1 3.6001 1.4049 -0.5603 6 1 1.5131 2.6097 -0.8311 7 6 2.0076 -1.2127 0.0005 8 1 1.6270 -2.0563 -0.5561 9 6 3.2141 -1.3329 0.7306 10 6 3.7661 -0.2255 1.4104 11 6 4.9377 -0.3898 2.1128 12 7 5.5534 -1.5578 2.1493 13 6 5.0806 -2.6256 1.5240 14 7 5.7765 -3.8319 1.5992 15 6 6.8612 -3.9358 2.3925 16 8 7.1754 -3.0130 3.1140 17 6 7.6835 -5.1986 2.3829 18 1 8.1190 -5.3708 1.3987 19 6 6.8385 -6.4126 2.8341 20 6 7.0944 -6.5102 4.3219 21 8 6.4172 -7.1446 5.1030 22 7 8.1818 -5.7925 4.6521 23 6 8.7048 -5.6636 6.0145 24 6 8.0870 -6.5528 7.0954 25 6 7.7813 -5.0539 7.0710 26 6 8.7776 -5.1542 3.4725 27 6 3.9032 -2.5593 0.7959 28 1 -0.4850 -0.8368 -0.0734 29 1 3.2736 0.7353 1.3831 30 1 5.3637 0.4516 2.6391 31 1 5.4799 -4.5960 1.0806 32 1 5.7809 -6.2345 2.6398 33 1 7.1713 -7.3185 2.3274 34 1 9.7700 -5.4448 6.0905 35 1 7.2917 -7.2340 6.7929 36 1 8.7456 -6.9193 7.8828 37 1 8.2388 -4.4342 7.8422 38 1 6.7847 -4.7482 6.7523 39 1 9.6571 -5.7096 3.1468 40 1 9.0447 -4.1214 3.6970 41 1 3.5210 -3.4323 0.2879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532179832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:44 Heat of formation + Delta-G solvation = 10.391908 kcal Electronic energy + Delta-G solvation = -25714.608853 eV Core-core repulsion = 21981.910895 eV Total energy + Delta-G solvation = -3732.697958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15128 -39.58810 -38.10751 -36.73998 -36.03247 -34.69876 -33.88037 -31.47472 -31.14961 -28.89054 -27.87792 -25.76597 -24.22251 -23.06293 -22.44725 -22.03908 -21.43425 -19.62230 -19.31061 -18.61603 -17.64702 -17.11431 -16.36899 -15.88244 -15.73085 -15.55434 -14.85317 -14.69270 -14.55912 -13.96416 -13.87513 -13.57967 -13.53602 -13.34931 -13.07376 -12.81014 -12.55232 -12.22094 -11.99150 -11.90820 -11.77243 -11.56701 -11.33015 -11.14759 -10.96966 -10.56215 -10.38152 -9.92196 -9.67600 -9.63823 -9.43050 -9.18674 -8.64607 -8.42893 -7.93032 -7.63132 -7.29463 -4.86664 2.25783 2.36490 2.69589 2.70963 3.03125 3.13209 3.25434 3.33046 3.43228 3.72589 3.82669 4.03129 4.14072 4.39722 4.50039 4.62264 4.71826 4.85266 4.89544 5.07151 5.17040 5.29733 5.40290 5.46731 5.50679 5.57397 5.61959 5.77877 5.89597 6.15906 6.21518 6.36873 6.41474 6.52736 6.58032 6.93652 7.09333 7.13536 7.24865 7.44103 7.52603 7.90436 8.01178 8.15424 8.29500 8.49582 8.58474 9.47330 9.62954 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002986 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.916969 B = 9373.712718 C = 9521.720462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.051 3.949 3 Si 1.082 2.918 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.292 1.292 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.131 3.869 10 C -0.319 4.319 11 C 0.145 3.855 12 N -0.570 5.570 13 C 0.365 3.635 14 N -0.659 5.659 15 C 0.506 3.494 16 O -0.467 6.467 17 C -0.126 4.126 18 H 0.127 0.873 19 C -0.149 4.149 20 C 0.519 3.481 21 O -0.528 6.528 22 N -0.586 5.586 23 C 0.082 3.918 24 C -0.192 4.192 25 C -0.187 4.187 26 C 0.118 3.882 27 C -0.313 4.313 28 H 0.293 0.707 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.407 0.593 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.018 -10.530 3.530 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.176 4.176 3 Si 0.909 3.091 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.221 1.221 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.123 3.877 10 C -0.342 4.342 11 C -0.007 4.007 12 N -0.290 5.290 13 C 0.141 3.859 14 N -0.305 5.305 15 C 0.289 3.711 16 O -0.336 6.336 17 C -0.148 4.148 18 H 0.145 0.855 19 C -0.189 4.189 20 C 0.307 3.693 21 O -0.405 6.405 22 N -0.318 5.318 23 C -0.022 4.022 24 C -0.229 4.229 25 C -0.226 4.226 26 C -0.005 4.005 27 C -0.339 4.339 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.242 0.758 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.473 -8.726 5.062 18.471 hybrid contribution -0.999 -2.026 -0.929 2.443 sum 14.474 -10.752 4.132 18.498 Atomic orbital electron populations 1.70574 1.08534 1.33977 1.26130 1.27499 0.95308 1.05366 0.89402 0.83495 0.75814 0.72340 0.77402 1.20018 1.18726 1.22054 1.20656 1.05424 0.99638 1.27129 0.90125 1.17507 0.90475 0.90280 0.89456 1.21736 1.02131 0.98905 1.11444 1.21727 0.91454 0.93274 0.94248 1.67260 1.35725 0.98638 1.27412 1.17991 0.89026 0.85335 0.93590 1.43406 1.28537 1.12853 1.45683 1.20205 0.81385 0.88700 0.80793 1.90804 1.67250 1.38925 1.36577 1.22400 0.96784 0.93794 1.01862 0.85482 1.22409 1.03005 0.99182 0.94304 1.20797 0.79666 0.78154 0.90646 1.90609 1.50531 1.43298 1.56057 1.47549 1.28456 1.49043 1.06746 1.21483 0.96461 1.06569 0.77669 1.23759 1.04703 0.95145 0.99284 1.23332 1.01644 0.96126 1.01461 1.22025 0.94550 1.00630 0.83254 1.20902 0.99363 0.99420 1.14220 0.89516 0.88279 0.85453 0.75755 0.87468 0.86491 0.85298 0.85216 0.88617 0.88178 0.88602 0.90053 0.87991 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.46 13.65 55.55 0.76 -18.70 16 2 C 0.05 1.26 5.37 -17.35 -0.09 1.17 16 3 Si 1.08 23.24 24.95 -169.99 -4.24 19.00 16 4 H -0.27 -5.66 6.68 56.52 0.38 -5.29 16 5 H -0.26 -5.58 6.90 56.52 0.39 -5.19 16 6 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.50 -12.87 9.37 -37.65 -0.35 -13.23 16 8 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.13 3.32 5.65 -106.55 -0.60 2.71 16 10 C -0.32 -7.82 8.08 -38.70 -0.31 -8.14 16 11 C 0.15 3.42 11.15 -17.68 -0.20 3.22 16 12 N -0.57 -13.74 7.89 -12.52 -0.10 -13.84 16 13 C 0.37 8.10 7.40 -154.71 -1.15 6.95 16 14 N -0.66 -11.02 5.17 -11.49 -0.06 -11.08 16 15 C 0.51 8.04 7.11 -10.99 -0.08 7.97 16 16 O -0.47 -9.51 13.80 5.56 0.08 -9.43 16 17 C -0.13 -1.25 3.55 -90.13 -0.32 -1.57 16 18 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.15 -1.44 6.35 -26.74 -0.17 -1.61 16 20 C 0.52 6.99 7.88 -10.86 -0.09 6.90 16 21 O -0.53 -8.77 14.69 5.55 0.08 -8.69 16 22 N -0.59 -7.00 3.27 -164.84 -0.54 -7.54 16 23 C 0.08 0.90 6.88 -67.93 -0.47 0.44 16 24 C -0.19 -2.17 9.77 -26.73 -0.26 -2.43 16 25 C -0.19 -2.27 10.34 -26.73 -0.28 -2.54 16 26 C 0.12 1.15 6.73 -3.12 -0.02 1.13 16 27 C -0.31 -7.24 9.73 -38.47 -0.37 -7.62 16 28 H 0.29 7.11 8.73 -40.82 -0.36 6.75 16 29 H 0.10 2.34 2.37 -52.48 -0.12 2.21 16 30 H 0.13 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.41 5.14 8.31 -40.82 -0.34 4.80 16 32 H 0.11 1.10 7.39 -51.93 -0.38 0.72 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.13 1.82 5.29 -51.93 -0.27 1.55 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 1.18 6.94 -51.92 -0.36 0.81 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -33.40 339.68 -8.56 -41.96 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.90 Total: 9.83 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.76 Total: -6.64 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.06 Total: -51.16 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.12 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.24 Total: 19.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.40 -8.56 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532179832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.354 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds