Wall clock time and date at job start Tue Mar 31 2020 10:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86807 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47002 * 83.58537 * 3 2 1 5 5 H 1.48496 * 109.47433 * 203.59077 * 3 2 1 6 6 H 1.48498 * 109.46521 * 323.58930 * 3 2 1 7 7 C 1.40033 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00169 * 36.55543 * 7 2 1 9 9 C 1.41540 * 120.00127 * 216.55381 * 7 2 1 10 10 C 1.41175 * 120.99683 * 356.78133 * 9 7 2 11 11 C 1.37595 * 119.01378 * 179.70266 * 10 9 7 12 12 N 1.32082 * 121.10944 * 0.58500 * 11 10 9 13 13 C 1.32467 * 122.23181 * 359.71478 * 12 11 10 14 14 N 1.39469 * 119.58015 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99798 * 5.44983 * 14 13 12 16 16 O 1.21280 * 120.00208 * 5.35047 * 15 14 13 17 17 C 1.50701 * 119.99813 * 185.35258 * 15 14 13 18 18 H 1.08993 * 110.86394 * 62.33394 * 17 15 14 19 19 C 1.54633 * 110.96839 * 298.54193 * 17 15 14 20 20 C 1.51280 * 104.19606 * 266.68395 * 19 17 15 21 21 O 1.21284 * 124.93808 * 163.78898 * 20 19 17 22 22 N 1.34415 * 110.11607 * 343.74521 * 20 19 17 23 23 C 1.46504 * 124.34820 * 179.57484 * 22 20 19 24 24 C 1.52999 * 117.49644 * 8.64664 * 23 22 20 25 25 C 1.52997 * 117.49723 * 300.02531 * 23 22 20 26 26 C 1.46756 * 111.30138 * 359.59291 * 22 20 19 27 27 C 1.38597 * 120.84157 * 359.97311 * 13 12 11 28 28 H 0.96996 * 119.99885 * 174.98772 * 1 2 3 29 29 H 1.08004 * 120.49241 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.44307 * 180.27835 * 11 10 9 31 31 H 0.96997 * 119.99809 * 185.45178 * 14 13 12 32 32 H 1.09002 * 110.48415 * 25.35819 * 19 17 15 33 33 H 1.09001 * 110.48719 * 147.87048 * 19 17 15 34 34 H 1.09001 * 115.54922 * 154.35140 * 23 22 20 35 35 H 1.08992 * 117.50253 * 0.02562 * 24 23 22 36 36 H 1.09002 * 117.49836 * 145.02519 * 24 23 22 37 37 H 1.09002 * 117.49831 * 214.98312 * 25 23 22 38 38 H 1.08998 * 117.50208 * 359.97438 * 25 23 22 39 39 H 1.08999 * 110.25054 * 258.01144 * 26 22 20 40 40 H 1.09008 * 110.24242 * 136.01663 * 26 22 20 41 41 H 1.07998 * 120.60285 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3535 2.1246 1.3913 5 1 3.6001 1.4049 -0.5603 6 1 1.5131 2.6097 -0.8311 7 6 2.0076 -1.2127 0.0005 8 1 1.6270 -2.0563 -0.5561 9 6 3.2141 -1.3329 0.7306 10 6 3.7661 -0.2255 1.4104 11 6 4.9377 -0.3898 2.1128 12 7 5.5534 -1.5578 2.1493 13 6 5.0806 -2.6256 1.5240 14 7 5.7765 -3.8319 1.5992 15 6 6.8612 -3.9358 2.3925 16 8 7.1754 -3.0130 3.1140 17 6 7.6835 -5.1986 2.3829 18 1 8.1190 -5.3708 1.3987 19 6 6.8385 -6.4126 2.8341 20 6 7.0944 -6.5102 4.3219 21 8 6.4172 -7.1446 5.1030 22 7 8.1818 -5.7925 4.6521 23 6 8.7048 -5.6636 6.0145 24 6 8.0870 -6.5528 7.0954 25 6 7.7813 -5.0539 7.0710 26 6 8.7776 -5.1542 3.4725 27 6 3.9032 -2.5593 0.7959 28 1 -0.4850 -0.8368 -0.0734 29 1 3.2736 0.7353 1.3831 30 1 5.3637 0.4516 2.6391 31 1 5.4799 -4.5960 1.0806 32 1 5.7809 -6.2345 2.6398 33 1 7.1713 -7.3185 2.3274 34 1 9.7700 -5.4448 6.0905 35 1 7.2917 -7.2340 6.7929 36 1 8.7456 -6.9193 7.8828 37 1 8.2388 -4.4342 7.8422 38 1 6.7847 -4.7482 6.7523 39 1 9.6571 -5.7096 3.1468 40 1 9.0447 -4.1214 3.6970 41 1 3.5210 -3.4323 0.2879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532179832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:43 Heat of formation + Delta-G solvation = -12.244420 kcal Electronic energy + Delta-G solvation = -25715.590438 eV Core-core repulsion = 21981.910895 eV Total energy + Delta-G solvation = -3733.679543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17220 -41.01041 -39.67704 -37.71316 -37.07494 -36.38809 -35.54575 -33.10565 -32.39616 -30.51277 -28.73377 -27.65368 -25.43039 -23.95733 -23.77645 -23.39576 -22.93458 -21.00845 -20.44888 -20.18537 -18.85598 -18.03332 -17.87762 -17.53307 -16.98686 -16.73463 -16.29036 -16.02883 -15.57987 -15.42122 -15.20141 -14.85275 -14.76235 -14.57498 -14.49457 -14.18647 -14.05377 -13.79792 -13.26964 -13.12421 -12.87165 -12.76256 -12.61001 -12.51331 -12.13180 -12.00397 -11.52955 -11.43797 -11.19672 -11.08068 -10.99120 -10.64525 -10.32572 -9.77496 -9.56180 -9.50784 -9.00586 -6.82624 0.55943 0.85048 1.33635 1.39356 1.54211 1.72957 1.77909 1.86487 2.01908 2.08413 2.52188 2.83902 3.19500 3.29461 3.48866 3.53891 3.73512 3.86180 3.94817 4.02291 4.11908 4.32719 4.39860 4.51235 4.59669 4.63577 4.67794 4.70818 4.74478 4.78571 4.81021 4.87149 4.95771 5.20308 5.23951 5.30272 5.42723 5.54669 5.64027 5.87295 6.05456 6.20579 6.42544 6.48162 6.58453 7.05370 7.20976 7.69776 7.71755 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002986 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.916969 B = 9373.712718 C = 9521.720462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.024 3.976 3 Si 1.109 2.891 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.112 3.888 10 C -0.337 4.337 11 C 0.140 3.860 12 N -0.586 5.586 13 C 0.366 3.634 14 N -0.650 5.650 15 C 0.499 3.501 16 O -0.515 6.515 17 C -0.107 4.107 18 H 0.181 0.819 19 C -0.139 4.139 20 C 0.499 3.501 21 O -0.573 6.573 22 N -0.591 5.591 23 C 0.083 3.917 24 C -0.188 4.188 25 C -0.204 4.204 26 C 0.116 3.884 27 C -0.326 4.326 28 H 0.289 0.711 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.427 0.573 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.054 0.946 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.034 -11.438 2.985 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.198 4.198 3 Si 0.931 3.069 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.104 3.896 10 C -0.360 4.360 11 C -0.013 4.013 12 N -0.306 5.306 13 C 0.139 3.861 14 N -0.298 5.298 15 C 0.286 3.714 16 O -0.387 6.387 17 C -0.129 4.129 18 H 0.198 0.802 19 C -0.179 4.179 20 C 0.289 3.711 21 O -0.453 6.453 22 N -0.322 5.322 23 C -0.021 4.021 24 C -0.225 4.225 25 C -0.242 4.242 26 C -0.005 4.005 27 C -0.351 4.351 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.171 0.829 31 H 0.266 0.734 32 H 0.118 0.882 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.495 -9.677 4.484 21.350 hybrid contribution -1.870 -1.833 -0.686 2.707 sum 16.625 -11.510 3.798 20.574 Atomic orbital electron populations 1.70624 1.08867 1.33829 1.27517 1.28437 0.95442 1.07419 0.88550 0.83161 0.75170 0.70224 0.78312 1.18766 1.18581 1.20333 1.20681 1.06407 0.99881 1.28545 0.91713 1.17810 0.90644 0.91618 0.89541 1.21926 1.02822 0.99203 1.12088 1.22195 0.91152 0.94106 0.93857 1.67414 1.36183 0.99292 1.27756 1.18274 0.88976 0.86650 0.92180 1.43460 1.28532 1.11706 1.46119 1.21364 0.80771 0.90256 0.79041 1.90788 1.68256 1.41383 1.38247 1.22471 0.95687 0.89959 1.04744 0.80226 1.22481 1.02745 1.00857 0.91818 1.21563 0.79567 0.77808 0.92195 1.90597 1.51892 1.45291 1.57562 1.47807 1.28237 1.48400 1.07718 1.21886 0.97768 1.05137 0.77284 1.23679 1.04461 0.93859 1.00484 1.23281 1.00250 0.97335 1.03348 1.22284 0.95739 1.00311 0.82214 1.21113 0.99856 0.99427 1.14750 0.89913 0.87530 0.82868 0.73417 0.88209 0.81992 0.81774 0.88105 0.85756 0.86128 0.92745 0.85172 0.89799 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.33 13.65 21.84 0.30 -40.03 16 2 C 0.02 1.21 5.37 85.29 0.46 1.67 16 3 Si 1.11 46.34 24.95 68.60 1.71 48.05 16 4 H -0.26 -10.36 6.68 99.48 0.66 -9.70 16 5 H -0.26 -10.79 6.90 99.48 0.69 -10.10 16 6 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.53 -27.77 9.37 23.52 0.22 -27.55 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 C 0.11 5.72 5.65 -21.11 -0.12 5.60 16 10 C -0.34 -16.47 8.08 22.84 0.18 -16.28 16 11 C 0.14 6.48 11.15 84.50 0.94 7.42 16 12 N -0.59 -27.89 7.89 -193.53 -1.53 -29.41 16 13 C 0.37 15.92 7.40 132.75 0.98 16.90 16 14 N -0.65 -20.53 5.17 -308.66 -1.60 -22.13 16 15 C 0.50 14.79 7.11 87.66 0.62 15.41 16 16 O -0.51 -20.51 13.80 -3.03 -0.04 -20.55 16 17 C -0.11 -1.67 3.55 -10.48 -0.04 -1.70 16 18 H 0.18 1.04 8.14 -2.39 -0.02 1.02 16 19 C -0.14 -2.21 6.35 30.59 0.19 -2.02 16 20 C 0.50 12.74 7.88 87.90 0.69 13.43 16 21 O -0.57 -19.31 14.69 -3.04 -0.04 -19.35 16 22 N -0.59 -12.82 3.27 -794.04 -2.60 -15.42 16 23 C 0.08 1.68 6.88 44.99 0.31 1.99 16 24 C -0.19 -4.12 9.77 30.59 0.30 -3.82 16 25 C -0.20 -4.96 10.34 30.59 0.32 -4.64 16 26 C 0.12 1.81 6.73 86.83 0.58 2.39 16 27 C -0.33 -15.04 9.73 22.99 0.22 -14.81 16 28 H 0.29 14.47 8.73 -92.71 -0.81 13.66 16 29 H 0.11 4.96 2.37 -2.91 -0.01 4.95 16 30 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 31 H 0.43 9.66 8.31 -92.71 -0.77 8.89 16 32 H 0.10 1.80 7.39 -2.39 -0.02 1.78 16 33 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.91 5.29 -2.39 -0.01 2.90 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.70 6.94 -2.38 -0.02 1.69 16 41 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -77.55 339.68 2.30 -75.25 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.22 Total: 29.59 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 5.87 Total: -6.01 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -5.42 Total: -106.98 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.09 Total: -39.90 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.71 Total: 48.05 kcal Total: -77.55 2.30 -75.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532179832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.009 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds