Wall clock time and date at job start Tue Mar 31 2020 11:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30000 * 127.40421 * 2 1 4 4 O 1.20854 * 113.53181 * 180.02562 * 3 2 1 5 5 C 1.34448 * 113.07276 * 0.02562 * 4 3 2 6 6 N 1.32335 * 134.98757 * 180.02562 * 5 4 3 7 7 C 1.31469 * 121.77821 * 179.79766 * 6 5 4 8 8 C 1.40019 * 121.51970 * 0.45170 * 7 6 5 9 9 C 1.47710 * 120.50290 * 179.78767 * 8 7 6 10 10 O 1.21567 * 120.00365 * 230.54515 * 9 8 7 11 11 N 1.34781 * 120.00050 * 50.54200 * 9 8 7 12 12 C 1.46922 * 120.63333 * 176.17504 * 11 9 8 13 13 C 1.53196 * 108.89189 * 233.51644 * 12 11 9 14 14 C 1.53070 * 109.29620 * 305.57838 * 13 12 11 15 15 C 1.50707 * 109.44007 * 181.23387 * 14 13 12 16 16 H 1.08001 * 119.99626 * 239.79139 * 15 14 13 17 17 C 1.37874 * 119.99638 * 59.79720 * 15 14 13 18 18 N 1.31519 * 120.00214 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99655 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47207 * 90.00043 * 19 17 15 21 21 H 1.48498 * 109.47236 * 209.99872 * 19 17 15 22 22 H 1.48497 * 109.47631 * 329.99990 * 19 17 15 23 23 C 1.53048 * 109.65808 * 61.15437 * 14 13 12 24 24 C 1.46929 * 120.62672 * 356.15622 * 11 9 8 25 25 C 1.39905 * 118.99981 * 359.51283 * 8 7 6 26 26 C 1.38668 * 117.70599 * 0.25412 * 25 8 7 27 27 H 1.09000 * 109.47130 * 270.00158 * 1 2 3 28 28 H 1.09010 * 109.47214 * 29.99386 * 1 2 3 29 29 H 1.08997 * 109.47327 * 149.99484 * 1 2 3 30 30 H 1.07994 * 119.24215 * 180.23859 * 7 6 5 31 31 H 1.08999 * 109.58460 * 353.37694 * 12 11 9 32 32 H 1.08991 * 109.58700 * 113.65967 * 12 11 9 33 33 H 1.08998 * 109.49541 * 65.38923 * 13 12 11 34 34 H 1.08993 * 109.49694 * 185.48099 * 13 12 11 35 35 H 1.08999 * 109.34804 * 301.12870 * 14 13 12 36 36 H 0.97000 * 119.99701 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.49388 * 178.74777 * 23 14 13 38 38 H 1.08995 * 109.52473 * 58.66379 * 23 14 13 39 39 H 1.09004 * 109.58391 * 246.19561 * 24 11 9 40 40 H 1.08998 * 109.58940 * 6.47932 * 24 11 9 41 41 H 1.07992 * 121.14974 * 180.22966 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2967 1.0327 0.0000 4 8 3.4700 0.7429 -0.0005 5 6 3.6849 -0.5843 -0.0015 6 7 4.7584 -1.3581 -0.0019 7 6 4.6665 -2.6696 0.0010 8 6 3.4247 -3.3164 -0.0047 9 6 3.3476 -4.7915 -0.0060 10 8 2.6513 -5.3631 -0.8222 11 7 4.0493 -5.5038 0.8978 12 6 3.9187 -6.9657 0.9635 13 6 3.5698 -7.3685 2.3998 14 6 4.6121 -6.7840 3.3564 15 6 4.2890 -7.2035 4.7673 16 1 4.0931 -6.4557 5.5215 17 6 4.2436 -8.5419 5.0953 18 7 4.4818 -9.4525 4.1766 19 14 3.8439 -9.0619 6.8443 20 1 2.3755 -9.2321 6.9867 21 1 4.5228 -10.3476 7.1459 22 1 4.3153 -8.0193 7.7908 23 6 4.5976 -5.2564 3.2627 24 6 4.9599 -4.8330 1.8357 25 6 2.2579 -2.5444 -0.0033 26 6 2.3976 -1.1648 -0.0017 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 5.5696 -3.2617 0.0045 31 1 3.1266 -7.2924 0.2897 32 1 4.8607 -7.4302 0.6724 33 1 2.5843 -6.9803 2.6572 34 1 3.5661 -8.4553 2.4821 35 1 5.6002 -7.1551 3.0844 36 1 4.4495 -10.3941 4.4073 37 1 5.3249 -4.8423 3.9609 38 1 3.6031 -4.8857 3.5107 39 1 5.9877 -5.1236 1.6182 40 1 4.8567 -3.7525 1.7357 41 1 1.2820 -3.0070 -0.0039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541976981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:30 Heat of formation + Delta-G solvation = 58.117483 kcal Electronic energy + Delta-G solvation = -25952.995150 eV Core-core repulsion = 22222.366728 eV Total energy + Delta-G solvation = -3730.628422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.00819 -40.68691 -38.99747 -36.98074 -35.20845 -33.75823 -32.64183 -31.78937 -31.11444 -30.16843 -29.07668 -26.63541 -25.61537 -24.53129 -23.02756 -22.43696 -21.55965 -20.60007 -19.05182 -18.41347 -18.13597 -18.07054 -16.70516 -16.56797 -16.11087 -15.50751 -14.97506 -14.62019 -14.24184 -13.91121 -13.85461 -13.71124 -13.64110 -13.40596 -13.22827 -13.07999 -12.85482 -12.75335 -12.35418 -11.97684 -11.77811 -11.29669 -11.20642 -10.99276 -10.73724 -10.53719 -10.29876 -10.16283 -9.69849 -9.68124 -9.62729 -9.42302 -9.19580 -9.02074 -8.45545 -8.19410 -6.09038 -4.15818 0.20894 0.34610 1.74611 1.96034 2.59826 3.01842 3.24405 3.31998 3.32096 3.34712 3.50298 3.73216 4.03284 4.30718 4.35602 4.36807 4.50202 4.75499 5.07333 5.08131 5.14168 5.20825 5.22500 5.33012 5.50140 5.60375 5.62018 5.76485 5.82587 5.92303 6.12312 6.27728 6.31102 6.49135 6.65949 6.83300 7.06142 7.11197 7.21238 7.61008 7.64104 7.83113 7.86164 7.97074 8.22652 8.32270 8.87417 9.49888 10.96429 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.003133 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.280526 B = 8935.673779 C = 9251.779697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.318 5.318 4 O 0.083 5.917 5 C 0.224 3.776 6 N -0.460 5.460 7 C 0.193 3.807 8 C -0.184 4.184 9 C 0.561 3.439 10 O -0.540 6.540 11 N -0.587 5.587 12 C 0.109 3.891 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.095 3.905 25 C 0.052 3.948 26 C -0.224 4.224 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.185 0.815 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.107 0.893 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 14.330 -8.688 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 N -0.026 5.026 4 O 0.026 5.974 5 C 0.042 3.958 6 N -0.177 5.177 7 C 0.028 3.972 8 C -0.190 4.190 9 C 0.347 3.653 10 O -0.419 6.419 11 N -0.318 5.318 12 C -0.012 4.012 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.162 4.162 24 C -0.027 4.027 25 C 0.024 3.976 26 C -0.229 4.229 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.202 0.798 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.429 15.613 -9.123 18.405 hybrid contribution -0.923 -1.446 1.086 2.030 sum -4.352 14.167 -8.037 16.859 Atomic orbital electron populations 1.20289 0.84347 1.04604 1.04271 1.24302 0.98383 0.86642 1.00649 1.73484 0.88734 1.23165 1.17212 1.84887 1.20084 1.19415 1.72975 1.21717 0.90510 0.86247 0.97306 1.66451 1.29843 1.04815 1.16564 1.23213 0.97350 0.87532 0.89121 1.21021 0.94765 0.95829 1.07343 1.17770 0.80529 0.85314 0.81694 1.90789 1.41384 1.71120 1.38593 1.48226 1.42082 1.08872 1.32666 1.21997 1.01693 0.76602 1.00873 1.22052 0.99012 1.04862 0.90270 1.18651 0.95380 0.88007 0.94952 1.21166 1.47762 0.91748 0.94609 0.92708 1.24956 0.95062 0.96760 0.97129 1.69830 1.49468 1.00779 1.32791 0.86613 0.78442 0.78044 0.85018 1.20727 1.21210 1.19955 1.22011 1.00799 1.00885 0.92472 1.22189 0.93174 0.96087 0.91285 1.20804 0.99380 0.89430 0.88002 1.20832 0.94671 0.95544 1.11883 0.89143 0.89635 0.89279 0.79842 0.90336 0.91712 0.94276 0.87531 0.95285 0.92874 0.91789 0.92861 0.90902 0.91130 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.50 36.01 0.38 -0.12 16 2 C 0.07 0.73 7.59 -79.98 -0.61 0.12 16 3 N -0.32 -3.87 11.94 34.92 0.42 -3.45 16 4 O 0.08 1.09 11.11 16.10 0.18 1.26 16 5 C 0.22 2.93 8.75 -16.20 -0.14 2.79 16 6 N -0.46 -5.95 10.36 -12.61 -0.13 -6.08 16 7 C 0.19 2.26 8.51 -17.04 -0.15 2.12 16 8 C -0.18 -2.38 5.02 -104.74 -0.53 -2.91 16 9 C 0.56 8.81 7.26 -12.39 -0.09 8.72 16 10 O -0.54 -10.06 16.48 5.31 0.09 -9.98 16 11 N -0.59 -9.42 2.97 -173.93 -0.52 -9.93 16 12 C 0.11 1.97 6.42 -3.71 -0.02 1.95 16 13 C -0.12 -2.65 5.16 -26.59 -0.14 -2.79 16 14 C 0.05 1.08 2.06 -91.71 -0.19 0.89 16 15 C -0.51 -13.14 8.56 -34.44 -0.29 -13.43 16 16 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -23.84 11.30 55.43 0.63 -23.22 16 19 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.12 -2.22 5.30 -26.61 -0.14 -2.37 16 24 C 0.10 1.38 5.38 -3.71 -0.02 1.36 16 25 C 0.05 0.61 9.94 -38.80 -0.39 0.23 16 26 C -0.22 -2.64 6.55 -105.22 -0.69 -3.33 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.18 1.72 7.04 -52.49 -0.37 1.35 16 31 H 0.08 1.44 7.03 -51.93 -0.36 1.07 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 2.58 6.03 -51.93 -0.31 2.27 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.87 4.53 -51.93 -0.24 0.64 16 41 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -29.57 339.33 -7.40 -36.97 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.05 Total: -0.77 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.11 Total: -5.25 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.40 Total: -42.68 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.27 Total: -8.71 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.57 -7.40 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.087 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds