Wall clock time and date at job start Tue Mar 31 2020 10:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39677 * 120.11316 * 239.55716 * 3 2 1 5 5 C 1.37981 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.22735 * 359.97438 * 5 4 3 7 7 C 1.38989 * 120.23757 * 0.02562 * 6 5 4 8 8 N 1.39703 * 120.00219 * 179.97438 * 7 6 5 9 9 C 1.46854 * 110.99921 * 60.00015 * 8 7 6 10 10 C 1.53029 * 109.52283 * 174.15858 * 9 8 7 11 11 C 1.53126 * 109.27795 * 59.18140 * 10 9 8 12 12 C 1.52998 * 109.52128 * 182.44116 * 11 10 9 13 13 C 1.50699 * 109.47169 * 184.99691 * 12 11 10 14 14 H 1.08001 * 119.99784 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00130 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00030 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47172 * 90.00417 * 17 15 13 19 19 H 1.48506 * 109.46884 * 210.00073 * 17 15 13 20 20 H 1.48499 * 109.47239 * 330.00114 * 17 15 13 21 21 C 1.53124 * 109.15878 * 302.34185 * 11 10 9 22 22 C 1.46843 * 111.00066 * 295.79187 * 8 7 6 23 23 C 1.38661 * 119.99474 * 0.25264 * 7 6 5 24 24 N 1.48018 * 120.11429 * 179.72661 * 23 7 6 25 25 O 1.21797 * 120.00332 * 89.99699 * 24 23 7 26 26 O 1.21799 * 119.99810 * 269.99634 * 24 23 7 27 27 H 1.07995 * 120.00399 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.88164 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.87966 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.45788 * 54.14292 * 9 8 7 31 31 H 1.09001 * 109.46218 * 294.17895 * 9 8 7 32 32 H 1.08994 * 109.50822 * 299.23828 * 10 9 8 33 33 H 1.08998 * 109.53380 * 179.13826 * 10 9 8 34 34 H 1.08998 * 109.52297 * 62.25132 * 11 10 9 35 35 H 1.09000 * 109.47277 * 304.99549 * 12 11 10 36 36 H 1.09002 * 109.47758 * 64.99432 * 12 11 10 37 37 H 0.97000 * 120.00018 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.50088 * 177.59509 * 21 11 10 39 39 H 1.09004 * 109.50324 * 297.71684 * 21 11 10 40 40 H 1.09001 * 109.45906 * 305.84966 * 22 8 7 41 41 H 1.08997 * 109.46476 * 65.82511 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.6132 1.0417 5 6 4.6483 0.6119 1.0396 6 6 5.3422 0.0054 0.0091 7 6 4.6549 -0.6070 -1.0323 8 7 5.3610 -1.2180 -2.0714 9 6 6.2185 -2.2960 -1.5623 10 6 6.8627 -3.0351 -2.7373 11 6 7.6900 -2.0467 -3.5639 12 6 8.2873 -2.7670 -4.7744 13 6 9.1993 -1.8264 -5.5190 14 1 9.3394 -0.8160 -5.1640 15 6 9.8559 -2.2559 -6.6528 16 7 9.6858 -3.4863 -7.0847 17 14 10.9870 -1.0901 -7.5752 18 1 12.3651 -1.2060 -7.0344 19 1 10.9903 -1.4418 -9.0180 20 1 10.5047 0.3043 -7.4067 21 6 6.7836 -0.9088 -4.0415 22 6 6.1417 -0.2313 -2.8286 23 6 3.2683 -0.6064 -1.0427 24 7 2.5337 -1.2524 -2.1535 25 8 2.2271 -2.4287 -2.0782 26 8 2.2358 -0.6076 -3.1430 27 1 2.7302 1.0870 1.8492 28 1 5.1880 1.0864 1.8458 29 1 6.4222 0.0074 0.0133 30 1 5.6171 -2.9940 -0.9799 31 1 6.9976 -1.8719 -0.9289 32 1 6.0845 -3.4713 -3.3636 33 1 7.5111 -3.8255 -2.3593 34 1 8.4924 -1.6396 -2.9487 35 1 8.8559 -3.6337 -4.4374 36 1 7.4845 -3.0938 -5.4354 37 1 10.1479 -3.7886 -7.8822 38 1 7.3756 -0.1797 -4.5946 39 1 6.0041 -1.3115 -4.6883 40 1 5.4845 0.5702 -3.1659 41 1 6.9212 0.1831 -2.1893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574316170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:31 Heat of formation + Delta-G solvation = 53.086808 kcal Electronic energy + Delta-G solvation = -25954.251475 eV Core-core repulsion = 22223.404907 eV Total energy + Delta-G solvation = -3730.846568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32994 -40.63010 -38.72948 -37.03510 -36.46597 -34.92549 -32.69452 -32.55120 -30.69710 -30.62191 -27.79561 -26.64851 -25.00573 -23.88865 -22.91239 -22.41387 -21.16730 -19.86239 -19.39267 -18.75065 -18.62035 -17.73019 -16.60168 -16.29127 -15.94283 -15.78432 -15.24922 -14.64620 -14.58197 -14.24252 -13.98450 -13.73925 -13.47021 -13.36931 -12.96991 -12.87358 -12.84224 -12.36998 -12.19031 -11.83633 -11.63907 -11.28286 -11.17653 -11.06956 -11.00220 -10.87101 -10.74372 -10.39391 -10.17787 -10.06671 -9.70326 -9.60727 -9.21343 -8.98034 -8.83313 -8.36279 -6.00831 -4.03128 -0.29201 0.16968 0.50556 1.17439 1.89902 2.12390 2.84223 2.88832 3.29826 3.37092 3.37880 3.38944 4.04110 4.10501 4.30935 4.39091 4.44022 4.48756 5.00355 5.04185 5.09113 5.15205 5.34377 5.36476 5.39211 5.42714 5.56182 5.61715 5.67370 5.89139 5.99581 6.16933 6.26658 6.27980 6.49525 6.71735 6.73125 6.83795 6.95797 7.02150 7.08796 7.53479 7.64784 7.80136 7.98614 8.40257 9.03177 9.60791 11.10421 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003092 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.298228 B = 9052.151925 C = 9430.763591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C 0.229 3.771 3 C 0.025 3.975 4 C -0.067 4.067 5 C -0.074 4.074 6 C -0.111 4.111 7 C 0.153 3.847 8 N -0.518 5.518 9 C 0.064 3.936 10 C -0.113 4.113 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.101 4.101 22 C 0.060 3.940 23 C 0.030 3.970 24 N 0.026 4.974 25 O -0.129 6.129 26 O -0.128 6.128 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 8.887 19.936 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.041 5.041 2 C -0.088 4.088 3 C 0.021 3.979 4 C -0.088 4.088 5 C -0.093 4.093 6 C -0.133 4.133 7 C 0.057 3.943 8 N -0.241 5.241 9 C -0.062 4.062 10 C -0.151 4.151 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.054 4.054 24 N 0.558 4.442 25 O -0.353 6.353 26 O -0.352 6.352 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.526 8.877 20.017 24.296 hybrid contribution 1.501 0.733 -0.363 1.710 sum -9.025 9.611 19.654 23.666 Atomic orbital electron populations 1.81301 1.11309 1.06114 1.05360 1.25341 0.92342 0.95430 0.95702 1.15391 0.84980 1.02060 0.95515 1.21242 0.94442 0.96886 0.96253 1.21346 0.93324 0.96412 0.98180 1.22111 1.02101 0.95939 0.93117 1.18447 0.89342 0.93942 0.92585 1.59756 1.31242 1.12518 1.20580 1.22298 0.94043 0.91876 0.97946 1.21736 0.99385 0.98252 0.95725 1.21268 0.95516 0.94842 0.98375 1.19106 0.95488 0.95258 0.91011 1.21210 1.26335 0.98237 1.09780 0.92727 1.25015 0.96905 0.95056 0.97441 1.69956 1.43081 1.16278 1.24012 0.86653 0.81157 0.81312 0.79211 1.20800 1.21251 1.19911 1.21603 0.98712 0.98687 0.94843 1.22414 0.95038 0.92950 0.96049 1.20945 0.91427 1.03182 0.89841 1.43162 0.98788 1.00877 1.01331 1.94580 1.55540 0.99027 1.86150 1.94591 1.55877 1.64452 1.20318 0.82706 0.82932 0.82967 0.90845 0.93937 0.91096 0.91224 0.92760 0.96637 0.96350 0.93002 0.89979 0.91331 0.90809 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.79 18.54 41.84 0.78 -4.01 16 2 C 0.23 2.53 14.80 -22.47 -0.33 2.20 16 3 C 0.03 0.23 5.73 -106.96 -0.61 -0.38 16 4 C -0.07 -0.33 9.75 -39.14 -0.38 -0.71 16 5 C -0.07 -0.29 10.02 -39.67 -0.40 -0.69 16 6 C -0.11 -0.74 8.69 -39.30 -0.34 -1.08 16 7 C 0.15 1.60 4.67 -83.84 -0.39 1.21 16 8 N -0.52 -6.73 4.34 -171.20 -0.74 -7.47 16 9 C 0.06 0.79 5.11 -3.83 -0.02 0.77 16 10 C -0.11 -1.78 5.38 -26.65 -0.14 -1.93 16 11 C -0.08 -1.51 2.20 -90.49 -0.20 -1.71 16 12 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 13 C -0.52 -13.86 8.44 -34.44 -0.29 -14.16 16 14 H 0.05 1.41 7.08 -52.49 -0.37 1.03 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.10 -1.74 5.15 -26.65 -0.14 -1.87 16 22 C 0.06 0.80 5.17 -3.83 -0.02 0.78 16 23 C 0.03 0.35 6.17 -79.32 -0.49 -0.14 16 24 N 0.03 0.39 3.43 34.27 0.12 0.51 16 25 O -0.13 -2.11 19.25 -29.46 -0.57 -2.68 16 26 O -0.13 -2.12 19.25 -29.46 -0.57 -2.69 16 27 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 28 H 0.15 0.10 8.06 -52.49 -0.42 -0.33 16 29 H 0.15 0.81 7.11 -52.48 -0.37 0.44 16 30 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 31 H 0.04 0.45 7.32 -51.93 -0.38 0.07 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 1.50 7.05 -51.93 -0.37 1.14 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.04 0.49 7.54 -51.93 -0.39 0.09 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -32.48 355.76 -9.13 -41.61 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -5.24 Total: -5.41 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.98 Total: -15.63 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.89 Total: -36.68 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.13 Total: -5.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.48 -9.13 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574316170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.693 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds