Wall clock time and date at job start Tue Mar 31 2020 10:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39827 * 120.07402 * 260.27828 * 3 2 1 5 5 C 1.37633 * 119.92296 * 179.79229 * 4 3 2 6 6 C 1.39193 * 120.07419 * 0.46060 * 5 4 3 7 7 N 1.39185 * 119.92262 * 179.76372 * 6 5 4 8 8 C 1.46851 * 110.99698 * 124.23316 * 7 6 5 9 9 C 1.53042 * 109.52314 * 174.16046 * 8 7 6 10 10 C 1.53124 * 109.27768 * 59.18261 * 9 8 7 11 11 C 1.52993 * 109.52372 * 182.44098 * 10 9 8 12 12 C 1.50698 * 109.47207 * 294.68221 * 11 10 9 13 13 H 1.08006 * 120.00049 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31526 * 120.00071 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00115 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47415 * 89.99859 * 16 14 12 18 18 H 1.48502 * 109.47477 * 210.00319 * 16 14 12 19 19 H 1.48507 * 109.46971 * 329.99984 * 16 14 12 20 20 C 1.53125 * 109.15808 * 302.34614 * 10 9 8 21 21 C 1.46850 * 111.00298 * 0.03016 * 7 6 5 22 22 C 1.39156 * 120.15223 * 359.79324 * 6 5 4 23 23 C 1.37670 * 120.07524 * 359.97258 * 22 6 5 24 24 N 1.48012 * 120.03858 * 179.97438 * 23 22 6 25 25 O 1.21804 * 119.99795 * 0.02562 * 24 23 22 26 26 O 1.21796 * 119.99977 * 180.02562 * 24 23 22 27 27 H 1.08001 * 120.03968 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.95760 * 180.21178 * 5 4 3 29 29 H 1.09000 * 109.46559 * 294.17558 * 8 7 6 30 30 H 1.09000 * 109.46260 * 54.14754 * 8 7 6 31 31 H 1.08995 * 109.50397 * 299.24285 * 9 8 7 32 32 H 1.08995 * 109.50122 * 179.12054 * 9 8 7 33 33 H 1.08999 * 109.52426 * 62.24893 * 10 9 8 34 34 H 1.09007 * 109.47239 * 54.68059 * 11 10 9 35 35 H 1.09002 * 109.47480 * 174.68568 * 11 10 9 36 36 H 0.96999 * 119.99756 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.49864 * 297.71027 * 20 10 9 38 38 H 1.09001 * 109.53043 * 177.61704 * 20 10 9 39 39 H 1.09000 * 109.45639 * 305.85210 * 21 7 6 40 40 H 1.09000 * 109.46308 * 65.81534 * 21 7 6 41 41 H 1.07994 * 119.96089 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2053 1.1927 5 6 4.6449 0.2010 1.1898 6 6 5.3394 0.0029 -0.0001 7 7 6.7312 0.0041 -0.0002 8 6 7.2585 -1.2405 -0.5742 9 6 8.7813 -1.1445 -0.6922 10 6 9.3819 -0.9062 0.6961 11 6 10.8990 -0.7486 0.5767 12 6 11.5034 -2.0464 0.1064 13 1 10.8688 -2.8985 -0.0884 14 6 12.8664 -2.1463 -0.0754 15 7 13.3939 -3.2789 -0.4863 16 14 13.9640 -0.6726 0.2607 17 1 14.4019 -0.6948 1.6795 18 1 15.1541 -0.7293 -0.6257 19 1 13.2084 0.5780 -0.0047 20 6 8.7801 0.3697 1.2917 21 6 7.2574 0.2297 1.3521 22 6 4.6453 -0.1958 -1.1897 23 6 3.2686 -0.1976 -1.1933 24 7 2.5312 -0.4084 -2.4592 25 8 3.1424 -0.5810 -3.4985 26 8 1.3132 -0.4093 -2.4615 27 1 2.7304 0.3628 2.1157 28 1 5.1866 0.3556 2.1113 29 1 6.9964 -2.0782 0.0722 30 1 6.8267 -1.3960 -1.5629 31 1 9.0438 -0.3155 -1.3494 32 1 9.1737 -2.0743 -1.1037 33 1 9.1525 -1.7533 1.3425 34 1 11.1270 0.0396 -0.1410 35 1 11.3147 -0.4857 1.5494 36 1 14.3528 -3.3490 -0.6145 37 1 9.0427 1.2224 0.6657 38 1 9.1718 0.5223 2.2974 39 1 6.8248 1.1421 1.7625 40 1 6.9953 -0.6149 1.9894 41 1 5.1872 -0.3489 -2.1113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578645213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:34 Heat of formation + Delta-G solvation = 56.802172 kcal Electronic energy + Delta-G solvation = -25303.645560 eV Core-core repulsion = 21572.960102 eV Total energy + Delta-G solvation = -3730.685458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56809 -40.97883 -38.75129 -37.10408 -36.52071 -35.08437 -32.74966 -32.60290 -30.93008 -30.82348 -28.31635 -27.20460 -24.79685 -24.10132 -22.78967 -22.25769 -21.02733 -20.36721 -19.44435 -18.98084 -18.41285 -17.85965 -17.11523 -16.81407 -16.36722 -15.22328 -15.16262 -14.58611 -14.47148 -14.42703 -14.20456 -13.92477 -13.42900 -13.34417 -13.05371 -12.93411 -12.85977 -12.51795 -12.26675 -12.08167 -11.80891 -11.69959 -11.41126 -11.37854 -11.25333 -11.11192 -10.82573 -10.48254 -10.32356 -10.17772 -9.92856 -9.80845 -9.52379 -9.17933 -8.62202 -8.46148 -6.12811 -4.11236 -0.72931 0.16242 0.93565 0.95397 2.27925 2.28329 3.05468 3.15474 3.23262 3.31926 3.32246 3.33986 3.83622 4.20151 4.24979 4.32558 4.37070 4.67719 4.80691 4.88090 4.95861 5.04818 5.18376 5.22546 5.24942 5.29113 5.36237 5.48002 5.52478 5.65758 5.75155 5.96248 6.02405 6.07143 6.24676 6.47904 6.62449 6.68179 6.74771 6.82789 7.08073 7.11305 7.28835 7.30985 7.69896 8.43342 8.90933 9.49798 11.00311 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.002646 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.190110 B =10578.305550 C =11246.181238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.240 3.760 3 C -0.005 4.005 4 C -0.034 4.034 5 C -0.137 4.137 6 C 0.161 3.839 7 N -0.480 5.480 8 C 0.053 3.947 9 C -0.105 4.105 10 C -0.076 4.076 11 C -0.008 4.008 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.118 4.118 21 C 0.047 3.953 22 C -0.084 4.084 23 C 0.024 3.976 24 N 0.023 4.977 25 O -0.137 6.137 26 O -0.157 6.157 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 8.376 4.832 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.050 5.050 2 C -0.075 4.075 3 C -0.011 4.011 4 C -0.056 4.056 5 C -0.158 4.158 6 C 0.057 3.943 7 N -0.192 5.192 8 C -0.070 4.070 9 C -0.143 4.143 10 C -0.094 4.094 11 C -0.045 4.045 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.156 4.156 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.062 4.062 24 N 0.544 4.456 25 O -0.357 6.357 26 O -0.370 6.370 27 H 0.174 0.826 28 H 0.176 0.824 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.981 8.752 5.096 20.637 hybrid contribution 0.831 0.167 0.152 0.861 sum -17.150 8.919 5.248 20.030 Atomic orbital electron populations 1.81201 1.11422 1.06069 1.06321 1.24990 0.92018 0.95647 0.94880 1.15518 0.85618 1.07338 0.92631 1.21096 0.93737 0.94719 0.96057 1.21760 0.93967 1.01666 0.98408 1.19101 0.90170 0.93296 0.91704 1.58714 1.01856 1.35096 1.23491 1.22567 0.98510 0.86468 0.99491 1.21660 0.89910 1.04069 0.98645 1.21111 0.97775 0.95323 0.95223 1.19594 0.90612 0.97953 0.96365 1.21106 0.92589 0.97058 1.44965 0.90927 1.25035 0.98232 0.95599 0.94626 1.69911 1.12091 1.25235 1.46890 0.86809 0.80352 0.83949 0.78321 1.20406 1.21440 1.19017 1.21800 0.91544 1.00392 1.01847 1.22494 0.97844 1.01213 0.86284 1.20583 0.90262 0.99497 1.00251 1.20840 0.92100 1.10076 0.83179 1.43555 1.01339 0.98176 1.02551 1.94577 1.69782 1.51178 1.20186 1.94602 0.95145 1.54591 1.92698 0.82622 0.82411 0.92962 0.90001 0.91292 0.89210 0.91922 0.96460 0.97040 0.92708 0.91118 0.91022 0.90022 0.92745 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.83 18.38 41.83 0.77 -4.06 16 2 C 0.24 2.60 12.72 -22.47 -0.29 2.32 16 3 C -0.01 -0.04 5.74 -106.80 -0.61 -0.66 16 4 C -0.03 -0.19 9.75 -39.21 -0.38 -0.57 16 5 C -0.14 -0.78 8.79 -39.45 -0.35 -1.13 16 6 C 0.16 1.29 5.64 -83.83 -0.47 0.82 16 7 N -0.48 -4.60 4.69 -171.13 -0.80 -5.40 16 8 C 0.05 0.58 5.25 -3.83 -0.02 0.56 16 9 C -0.11 -1.54 5.15 -26.65 -0.14 -1.67 16 10 C -0.08 -1.20 2.20 -90.49 -0.20 -1.40 16 11 C -0.01 -0.17 3.52 -27.89 -0.10 -0.26 16 12 C -0.52 -13.40 9.00 -34.44 -0.31 -13.71 16 13 H 0.07 2.01 7.33 -52.48 -0.38 1.62 16 14 C 0.07 1.82 5.47 -17.82 -0.10 1.72 16 15 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 16 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 20 C -0.12 -1.42 5.38 -26.65 -0.14 -1.56 16 21 C 0.05 0.42 4.14 -3.83 -0.02 0.40 16 22 C -0.08 -0.74 8.64 -39.45 -0.34 -1.08 16 23 C 0.02 0.24 6.87 -79.58 -0.55 -0.31 16 24 N 0.02 0.28 4.45 34.14 0.15 0.44 16 25 O -0.14 -1.78 18.44 -29.46 -0.54 -2.33 16 26 O -0.16 -2.22 16.36 -29.46 -0.48 -2.71 16 27 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 28 H 0.16 0.58 5.77 -52.49 -0.30 0.28 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.79 6.68 -51.93 -0.35 0.45 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.51 7.05 -51.93 -0.37 1.15 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.54 6.96 -51.93 -0.36 0.18 16 40 H 0.05 0.43 7.72 -51.93 -0.40 0.03 16 41 H 0.17 1.43 6.68 -52.49 -0.35 1.08 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -30.85 342.80 -8.63 -39.48 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.98 Total: -4.19 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.01 Total: -16.53 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.89 Total: -34.76 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.03 Total: -5.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.85 -8.63 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578645213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.287 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds