Wall clock time and date at job start Tue Mar 31 2020 10:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48506 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46951 * 111.00081 * 293.80060 * 10 9 7 12 12 C 1.53045 * 109.36542 * 176.80928 * 11 10 9 13 13 N 1.46956 * 109.36490 * 58.40251 * 12 11 10 14 14 C 1.39005 * 111.00331 * 176.80869 * 13 12 11 15 15 C 1.39132 * 119.70832 * 303.52857 * 14 13 12 16 16 C 1.38294 * 119.09615 * 179.74950 * 15 14 13 17 17 C 1.50700 * 120.74558 * 180.22213 * 16 15 14 18 18 F 1.39902 * 109.47320 * 180.29878 * 17 16 15 19 19 F 1.39904 * 109.47046 * 300.29720 * 17 16 15 20 20 F 1.39897 * 109.47484 * 60.29517 * 17 16 15 21 21 C 1.38881 * 118.50612 * 0.51126 * 16 15 14 22 22 C 1.38018 * 119.33291 * 359.72840 * 21 16 15 23 23 N 1.31972 * 120.85255 * 0.02562 * 22 21 16 24 24 C 1.46954 * 110.88190 * 300.68146 * 13 12 11 25 25 C 1.46953 * 110.99875 * 170.00105 * 10 9 7 26 26 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 29 29 H 1.09005 * 109.48678 * 296.77705 * 11 10 9 30 30 H 1.09004 * 109.48825 * 56.84230 * 11 10 9 31 31 H 1.08998 * 109.49025 * 298.43470 * 12 11 10 32 32 H 1.09004 * 109.51053 * 178.37481 * 12 11 10 33 33 H 1.08003 * 120.44950 * 359.97438 * 15 14 13 34 34 H 1.08002 * 120.33592 * 179.75158 * 21 16 15 35 35 H 1.07994 * 119.57768 * 180.02562 * 22 21 16 36 36 H 1.09005 * 109.48381 * 299.35289 * 24 13 12 37 37 H 1.08996 * 109.51190 * 179.29618 * 24 13 12 38 38 H 1.09003 * 109.48921 * 303.15321 * 25 10 9 39 39 H 1.09004 * 109.49415 * 63.22045 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9689 -3.6562 -1.2558 12 6 4.0044 -4.7808 -1.1841 13 7 3.3197 -6.0592 -0.9459 14 6 4.2230 -7.1157 -0.9459 15 6 5.0377 -7.3263 -2.0539 16 6 5.9356 -8.3781 -2.0383 17 6 6.8392 -8.6371 -3.2161 18 9 7.6400 -9.7537 -2.9529 19 9 6.0633 -8.8779 -4.3551 20 9 7.6533 -7.5204 -3.4340 21 6 5.9814 -9.1938 -0.9152 22 6 5.1403 -8.9300 0.1468 23 7 4.2966 -7.9160 0.1063 24 6 2.5566 -6.0187 0.3093 25 6 1.5211 -4.8939 0.2377 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.2897 -3.8397 -2.0884 30 1 3.4767 -2.7031 -1.4035 31 1 4.6999 -4.5833 -0.3685 32 1 4.5523 -4.8317 -2.1250 33 1 4.9725 -6.6750 -2.9130 34 1 6.6685 -10.0260 -0.8732 35 1 5.1728 -9.5616 1.0222 36 1 3.2358 -5.8352 1.1420 37 1 2.0487 -6.9717 0.4575 38 1 0.9735 -4.8433 1.1788 39 1 0.8255 -5.0915 -0.5780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583798722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:25 Heat of formation + Delta-G solvation = -89.279776 kcal Electronic energy + Delta-G solvation = -26119.089410 eV Core-core repulsion = 21840.212623 eV Total energy + Delta-G solvation = -4278.876787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.50773 -48.03135 -47.95816 -40.99959 -38.57411 -35.39320 -33.59785 -32.61808 -30.77367 -30.54093 -27.79147 -27.04204 -25.18032 -24.08070 -22.60906 -22.38137 -21.40135 -19.54098 -18.84495 -18.82500 -18.74380 -16.75007 -16.46724 -16.36144 -16.14962 -15.17751 -14.94747 -14.81026 -14.73233 -14.42762 -14.40005 -14.36856 -14.15682 -14.11610 -14.10478 -13.74758 -13.60613 -13.12819 -12.69445 -12.36991 -12.16873 -11.83026 -11.32853 -11.02714 -10.87339 -10.83576 -10.59452 -10.52787 -10.48630 -10.04448 -9.84516 -9.81329 -9.23904 -8.47424 -8.26315 -7.34253 -6.06410 -4.08563 0.51383 0.76157 2.22297 3.14056 3.27565 3.30997 3.35521 3.37956 3.49339 3.70845 4.04947 4.22402 4.38553 4.55445 4.67101 4.74044 4.83694 5.15155 5.19267 5.28750 5.30392 5.38184 5.55414 5.58968 5.65359 5.74872 5.86957 5.95736 6.13356 6.33437 6.46609 6.50926 6.68579 7.02935 7.22544 7.28578 7.66738 7.73625 8.01071 8.11701 8.47289 8.98308 9.56001 11.04357 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002862 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.555390 B = 9781.719913 C =10543.373944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.066 3.934 12 C 0.061 3.939 13 N -0.476 5.476 14 C 0.330 3.670 15 C -0.141 4.141 16 C -0.115 4.115 17 C 0.512 3.488 18 F -0.174 7.174 19 F -0.172 7.172 20 F -0.172 7.172 21 C -0.170 4.170 22 C 0.135 3.865 23 N -0.499 5.499 24 C 0.073 3.927 25 C 0.051 3.949 26 H 0.262 0.738 27 H -0.007 1.007 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 -19.928 -3.904 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.064 4.064 13 N -0.192 5.192 14 C 0.098 3.902 15 C -0.165 4.165 16 C -0.125 4.125 17 C 0.457 3.543 18 F -0.156 7.156 19 F -0.154 7.154 20 F -0.153 7.153 21 C -0.192 4.192 22 C -0.023 4.023 23 N -0.213 5.213 24 C -0.053 4.053 25 C -0.078 4.078 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.788 -19.537 -3.221 23.044 hybrid contribution 0.906 0.605 -1.084 1.537 sum 12.694 -18.932 -4.305 23.196 Atomic orbital electron populations 1.69945 1.06077 1.26978 1.50705 1.24987 0.94861 0.99325 0.95341 0.86559 0.79446 0.82733 0.78660 1.20239 1.21341 1.20159 1.21101 0.93411 0.89934 1.50496 0.91934 1.19710 0.89958 0.87084 0.96303 1.62325 1.28390 1.02917 1.32780 1.22038 0.95352 0.97111 0.91810 1.22531 0.96604 0.85926 1.01370 1.59280 1.21225 1.02877 1.35840 1.19932 0.88684 0.93100 0.88522 1.21302 0.96403 0.98575 1.00195 1.20167 0.98504 0.98944 0.94838 1.18155 0.79075 0.74277 0.82769 1.93179 1.75141 1.53396 1.93860 1.93245 1.74729 1.94223 1.53153 1.93245 1.74276 1.52492 1.95307 1.21806 1.02483 1.01175 0.93718 1.22632 0.89446 0.92801 0.97383 1.67761 1.22003 1.06308 1.25242 1.22138 0.95857 0.99310 0.88042 1.22186 0.94759 0.89742 1.01095 0.92799 0.98913 0.95034 0.94809 0.88626 0.92541 0.90167 0.83462 0.83521 0.81544 0.92219 0.89911 0.90237 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.97 8.47 -34.44 -0.29 -14.26 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.30 16 9 C 0.19 4.94 4.72 -4.97 -0.02 4.91 16 10 N -0.54 -11.24 4.70 -235.90 -1.11 -12.35 16 11 C 0.07 1.21 5.43 -3.77 -0.02 1.19 16 12 C 0.06 0.91 5.37 -3.77 -0.02 0.89 16 13 N -0.48 -7.01 4.73 -173.04 -0.82 -7.82 16 14 C 0.33 4.37 6.40 -155.02 -0.99 3.38 16 15 C -0.14 -1.62 8.83 -39.23 -0.35 -1.97 16 16 C -0.11 -1.16 5.39 -104.36 -0.56 -1.73 16 17 C 0.51 4.97 3.34 36.01 0.12 5.09 16 18 F -0.17 -1.59 16.07 2.25 0.04 -1.55 16 19 F -0.17 -1.79 17.25 2.25 0.04 -1.75 16 20 F -0.17 -1.79 17.25 2.25 0.04 -1.75 16 21 C -0.17 -1.47 9.49 -39.42 -0.37 -1.85 16 22 C 0.14 1.26 11.17 -17.57 -0.20 1.06 16 23 N -0.50 -6.25 8.71 -12.44 -0.11 -6.36 16 24 C 0.07 1.12 4.79 -3.77 -0.02 1.10 16 25 C 0.05 0.91 5.61 -3.77 -0.02 0.89 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 28 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.86 6.79 -51.93 -0.35 1.51 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.00 6.80 -51.93 -0.35 0.65 16 33 H 0.15 1.55 7.19 -52.48 -0.38 1.17 16 34 H 0.15 0.91 7.26 -52.49 -0.38 0.53 16 35 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 37 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -29.78 333.39 -8.77 -38.56 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.75 Total: -2.82 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.84 Total: 0.17 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -1.30 Total: -52.10 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.78 -8.77 -38.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583798722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.723 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds