Wall clock time and date at job start Tue Mar 31 2020 10:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99985 * 2 1 4 4 H 1.48505 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47097 * 299.99239 * 3 2 1 6 6 H 1.48501 * 109.47491 * 59.99920 * 3 2 1 7 7 C 1.37879 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.46991 * 180.02562 * 12 11 10 14 14 N 1.30978 * 126.44374 * 90.28017 * 13 12 11 15 15 C 1.35206 * 105.58289 * 180.09811 * 14 13 12 16 16 C 1.48437 * 126.41298 * 179.90563 * 15 14 13 17 17 C 1.39445 * 120.05254 * 359.68748 * 16 15 14 18 18 C 1.38114 * 120.17826 * 180.02562 * 17 16 15 19 19 C 1.38069 * 120.26956 * 359.73783 * 18 17 16 20 20 C 1.39617 * 120.09272 * 0.51704 * 19 18 17 21 21 C 1.47860 * 120.08978 * 179.76368 * 20 19 18 22 22 N 1.34777 * 119.99422 * 359.72120 * 21 20 19 23 23 O 1.21553 * 120.00288 * 179.72422 * 21 20 19 24 24 C 1.39055 * 120.05062 * 179.71454 * 16 15 14 25 25 N 1.30758 * 107.17701 * 359.64037 * 15 14 13 26 26 O 1.21298 * 110.09429 * 0.22399 * 25 15 14 27 27 H 0.96995 * 119.99515 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47420 * 59.99914 * 9 7 2 29 29 H 1.08994 * 109.47132 * 299.99529 * 9 7 2 30 30 H 1.08997 * 109.47438 * 59.99847 * 10 9 7 31 31 H 1.09007 * 109.47529 * 299.99710 * 10 9 7 32 32 H 1.08997 * 109.47021 * 59.99703 * 11 10 9 33 33 H 1.08994 * 109.47003 * 300.00071 * 11 10 9 34 34 H 1.09001 * 109.46983 * 59.99428 * 12 11 10 35 35 H 1.09005 * 109.46702 * 300.00260 * 12 11 10 36 36 H 1.08007 * 119.91033 * 0.04722 * 17 16 15 37 37 H 1.07996 * 119.86877 * 180.02562 * 18 17 16 38 38 H 1.07993 * 119.95470 * 180.25954 * 19 18 17 39 39 H 0.97001 * 120.00485 * 0.02562 * 22 21 20 40 40 H 0.97005 * 119.99790 * 179.72357 * 22 21 20 41 41 H 1.08008 * 120.13232 * 359.95263 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0005 13 6 1.7209 -7.4551 0.0005 14 7 1.3359 -8.1312 -1.0531 15 6 0.7003 -9.2231 -0.5716 16 6 0.0765 -10.3049 -1.3741 17 6 0.1082 -10.2481 -2.7671 18 6 -0.4719 -11.2529 -3.5163 19 6 -1.0821 -12.3227 -2.8921 20 6 -1.1250 -12.3883 -1.4981 21 6 -1.7830 -13.5314 -0.8298 22 7 -2.3473 -14.5089 -1.5664 23 8 -1.8151 -13.5895 0.3839 24 6 -0.5409 -11.3763 -0.7380 25 7 0.7431 -9.1508 0.7332 26 8 1.3248 -8.1431 1.0759 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 0.8532 -5.0451 -0.8885 33 1 0.8539 -5.0446 0.8913 34 1 3.1018 -6.0922 0.8900 35 1 3.1005 -6.0923 -0.8899 36 1 0.5879 -9.4162 -3.2614 37 1 -0.4441 -11.2041 -4.5948 38 1 -1.5304 -13.1077 -3.4829 39 1 -2.3214 -14.4627 -2.5350 40 1 -2.7755 -15.2608 -1.1280 41 1 -0.5673 -11.4243 0.3407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589093846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:13 Heat of formation + Delta-G solvation = 30.571482 kcal Electronic energy + Delta-G solvation = -23820.527149 eV Core-core repulsion = 20088.704243 eV Total energy + Delta-G solvation = -3731.822906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.60765 -40.55126 -38.72333 -36.26790 -35.58737 -34.34245 -33.50643 -32.28624 -31.57416 -30.98062 -29.35706 -25.86430 -25.10429 -24.49547 -23.47136 -22.37772 -21.25778 -20.68750 -20.19723 -18.79921 -18.10357 -17.45824 -17.13773 -16.51253 -16.22934 -15.71564 -15.33845 -15.21026 -15.01706 -14.57349 -14.34380 -14.18292 -14.00508 -13.40830 -13.06408 -12.98877 -12.33141 -12.28356 -12.13048 -11.84945 -11.82059 -11.70595 -11.15745 -11.05159 -10.68577 -10.62028 -10.57654 -10.54899 -10.32395 -10.21572 -9.72913 -9.50693 -9.35780 -9.13386 -9.02268 -8.35656 -6.00420 -4.02958 0.17321 0.56082 1.20779 2.06636 2.58508 2.75740 2.91582 3.30681 3.30876 3.38509 3.42178 3.42248 3.80146 4.24281 4.30260 4.45528 4.46967 4.73373 4.78358 4.99350 5.11080 5.13844 5.19493 5.35396 5.36243 5.43744 5.66964 5.71503 5.74861 5.87211 5.97243 6.00726 6.04590 6.21565 6.30684 6.32922 6.66031 6.79805 6.81280 7.08820 7.67236 7.75371 7.80587 7.99695 8.04358 8.41460 9.04756 9.61368 11.10937 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.001847 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.643650 B =15155.942896 C =15367.396760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.032 4.032 13 C 0.205 3.795 14 N -0.480 5.480 15 C 0.203 3.797 16 C -0.021 4.021 17 C -0.047 4.047 18 C -0.128 4.128 19 C -0.071 4.071 20 C -0.144 4.144 21 C 0.565 3.435 22 N -0.851 5.851 23 O -0.534 6.534 24 C -0.025 4.025 25 N -0.376 5.376 26 O 0.083 5.917 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.401 0.599 40 H 0.406 0.594 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -28.721 -8.122 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.071 4.071 13 C -0.015 4.015 14 N -0.212 5.212 15 C -0.067 4.067 16 C -0.023 4.023 17 C -0.067 4.067 18 C -0.146 4.146 19 C -0.090 4.090 20 C -0.147 4.147 21 C 0.351 3.649 22 N -0.415 5.415 23 O -0.411 6.411 24 C -0.046 4.046 25 N -0.082 5.082 26 O 0.022 5.978 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.231 0.769 40 H 0.238 0.762 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.454 -29.164 -7.213 30.078 hybrid contribution 0.225 0.808 -0.315 0.896 sum -1.229 -28.356 -7.528 29.364 Atomic orbital electron populations 1.69980 1.06071 1.26488 1.50942 1.25043 0.94849 0.99314 0.95373 0.86545 0.80107 0.83827 0.77562 1.19718 1.21053 1.21045 1.21299 0.93092 0.91067 1.50425 0.92557 1.19110 0.94046 0.91317 0.97347 1.21634 0.99171 0.93013 1.00776 1.21749 0.97513 0.93322 1.02888 1.20587 0.97190 0.83299 1.05983 1.29131 0.95140 0.97294 0.79928 1.71984 1.15786 1.04716 1.28754 1.23749 0.99927 0.95307 0.87713 1.17264 1.00837 0.92006 0.92165 1.21511 0.94912 0.98298 0.92007 1.21088 0.98894 0.93861 1.00707 1.21428 0.96649 0.97935 0.93022 1.19717 1.04343 0.96905 0.93760 1.18191 0.77722 0.82238 0.86726 1.43722 1.60964 1.25812 1.11013 1.90857 1.58750 1.77923 1.13599 1.21290 0.91632 0.90299 1.01346 1.74905 1.14983 1.03515 1.14800 1.85304 1.51868 1.24667 1.35925 0.93065 0.96563 0.96530 0.92863 0.92889 0.91450 0.91572 0.87863 0.87128 0.83798 0.84241 0.85076 0.76945 0.76235 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.47 4.97 -27.88 -0.14 0.33 16 10 C -0.11 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.12 -1.76 5.20 -26.73 -0.14 -1.90 16 12 C -0.03 -0.37 5.84 -27.89 -0.16 -0.53 16 13 C 0.21 2.74 7.75 -12.99 -0.10 2.64 16 14 N -0.48 -6.81 11.25 -9.88 -0.11 -6.93 16 15 C 0.20 2.88 7.80 -156.12 -1.22 1.66 16 16 C -0.02 -0.25 5.87 -104.94 -0.62 -0.86 16 17 C -0.05 -0.43 9.69 -39.18 -0.38 -0.81 16 18 C -0.13 -0.80 10.02 -39.69 -0.40 -1.20 16 19 C -0.07 -0.41 9.54 -39.13 -0.37 -0.79 16 20 C -0.14 -1.30 5.87 -105.01 -0.62 -1.91 16 21 C 0.57 5.32 8.05 -12.32 -0.10 5.22 16 22 N -0.85 -3.86 8.82 30.53 0.27 -3.59 16 23 O -0.53 -7.44 17.18 5.32 0.09 -7.35 16 24 C -0.02 -0.29 9.24 -38.85 -0.36 -0.64 16 25 N -0.38 -5.67 11.85 30.97 0.37 -5.30 16 26 O 0.08 1.19 11.29 18.03 0.20 1.39 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.14 1.27 7.87 -52.48 -0.41 0.86 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.25 6.39 -52.49 -0.34 -0.08 16 39 H 0.40 0.53 6.86 -40.82 -0.28 0.25 16 40 H 0.41 1.39 8.93 -40.82 -0.36 1.02 16 41 H 0.15 1.89 7.45 -52.48 -0.39 1.50 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -35.34 360.83 -8.30 -43.65 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.13 Total: -3.41 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -5.15 Total: -14.23 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.26 Total: -41.90 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.29 Total: -5.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.34 -8.30 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589093846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.219 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds