Wall clock time and date at job start Tue Mar 31 2020 11:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38210 * 119.98707 * 2 1 4 4 C 1.38364 * 120.05205 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.98089 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.03796 * 0.04275 * 4 3 2 7 7 F 1.35100 * 120.00448 * 179.97438 * 6 4 3 8 8 C 1.38311 * 119.98841 * 359.95545 * 6 4 3 9 9 C 1.38676 * 119.99637 * 180.02562 * 2 1 3 10 10 O 1.35943 * 120.02117 * 359.97438 * 9 2 1 11 11 C 1.42897 * 117.00431 * 179.97438 * 10 9 2 12 12 C 1.53004 * 109.47454 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46718 * 304.99682 * 12 11 10 14 14 O 1.42891 * 109.47352 * 64.99808 * 12 11 10 15 15 C 1.53003 * 109.46829 * 185.00072 * 12 11 10 16 16 N 1.46906 * 109.46575 * 178.50616 * 15 12 11 17 17 C 1.46905 * 110.99483 * 164.00702 * 16 15 12 18 18 C 1.46897 * 110.99949 * 287.95866 * 16 15 12 19 19 C 1.50699 * 109.47061 * 170.00312 * 18 16 15 20 20 H 1.08001 * 119.99891 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00181 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99801 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00211 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46871 * 60.00185 * 23 21 19 25 25 H 1.48499 * 109.46964 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47172 * 299.99957 * 23 21 19 27 27 H 1.08991 * 109.47416 * 269.97669 * 1 2 3 28 28 H 1.08997 * 109.47246 * 29.98646 * 1 2 3 29 29 H 1.09001 * 109.46680 * 149.97788 * 1 2 3 30 30 H 1.08001 * 119.97888 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.02822 * 180.29857 * 8 6 4 32 32 H 1.09008 * 109.46792 * 300.00171 * 11 10 9 33 33 H 1.09004 * 109.47085 * 59.99692 * 11 10 9 34 34 H 0.96702 * 114.00495 * 59.99923 * 14 12 11 35 35 H 1.09000 * 109.46932 * 298.50254 * 15 12 11 36 36 H 1.08996 * 109.47276 * 58.50718 * 15 12 11 37 37 H 1.09006 * 109.46804 * 65.48666 * 17 16 15 38 38 H 1.08998 * 109.46363 * 185.48386 * 17 16 15 39 39 H 1.08993 * 109.47182 * 305.48596 * 17 16 15 40 40 H 1.08996 * 109.47106 * 290.00450 * 18 16 15 41 41 H 1.09004 * 109.47001 * 50.00413 * 18 16 15 42 42 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5814 1.1987 0.0005 5 9 4.2552 2.3696 0.0011 6 6 4.2771 -0.0013 0.0002 7 9 5.6281 0.0010 0.0002 8 6 3.5875 -1.2002 0.0002 9 6 2.2003 -1.2010 -0.0005 10 8 1.5210 -2.3785 -0.0005 11 6 2.2995 -3.5768 -0.0017 12 6 1.3678 -4.7904 -0.0021 13 1 0.6794 -4.7203 0.8400 14 8 0.6256 -4.8207 -1.2228 15 6 2.1973 -6.0701 0.1224 16 7 1.3006 -7.2332 0.1579 17 6 2.0395 -8.4757 -0.1034 18 6 0.5837 -7.3063 1.4380 19 6 -0.4961 -8.3538 1.3499 20 1 -0.6361 -8.9093 0.4344 21 6 -1.3059 -8.6023 2.4377 22 7 -1.1357 -7.9255 3.5524 23 14 -2.6449 -9.9002 2.3283 24 1 -2.0322 -11.2193 2.0284 25 1 -3.3695 -9.9742 3.6224 26 1 -3.5970 -9.5394 1.2473 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6572 2.1321 0.0004 31 1 4.1285 -2.1349 0.0048 32 1 2.9277 -3.6010 -0.8922 33 1 2.9291 -3.6019 0.8878 34 1 1.1753 -4.8827 -2.0160 35 1 2.8670 -6.1537 -0.7335 36 1 2.7836 -6.0351 1.0406 37 1 2.7450 -8.6563 0.7077 38 1 1.3390 -9.3082 -0.1679 39 1 2.5829 -8.3843 -1.0438 40 1 1.2828 -7.5710 2.2313 41 1 0.1338 -6.3382 1.6583 42 1 -1.7053 -8.1005 4.3179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591241488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:52 Heat of formation + Delta-G solvation = -150.290453 kcal Electronic energy + Delta-G solvation = -25939.060704 eV Core-core repulsion = 21748.705849 eV Total energy + Delta-G solvation = -4190.354854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.68566 -48.75379 -40.57372 -38.32358 -37.08658 -35.42756 -32.86656 -32.52824 -30.84665 -29.88292 -27.44970 -27.00052 -26.49020 -24.05947 -23.06247 -22.23001 -21.61527 -20.20128 -18.75749 -17.86154 -17.48336 -16.82466 -16.56885 -16.38703 -16.21557 -15.92736 -15.18012 -14.93187 -14.85024 -14.76488 -14.52225 -14.20455 -14.04829 -13.65799 -13.64161 -13.43843 -13.24078 -12.63109 -12.25439 -12.08297 -12.00069 -11.90914 -11.63794 -11.52481 -11.25530 -10.99791 -10.93542 -10.78618 -10.69151 -10.40944 -9.84273 -9.78108 -9.31490 -9.22070 -8.44126 -8.36100 -7.31529 -6.04216 -4.05017 0.58564 0.72416 2.78386 3.00805 3.33439 3.37421 3.40745 3.52853 3.97990 4.18037 4.38783 4.40744 4.52209 4.60678 4.62585 4.91893 4.96905 5.12701 5.25610 5.31214 5.33593 5.35498 5.40962 5.42998 5.49459 5.53017 5.57006 5.86662 5.93755 6.00173 6.05034 6.25047 6.26740 6.33713 6.65282 7.01336 7.20177 7.24345 7.74953 7.96566 8.02573 8.13493 8.49373 9.01464 9.59005 11.06893 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002571 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.523371 B =10886.744987 C =11517.089392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.089 4.089 4 C 0.026 3.974 5 F -0.132 7.132 6 C 0.103 3.897 7 F -0.127 7.127 8 C -0.220 4.220 9 C 0.157 3.843 10 O -0.285 6.285 11 C 0.023 3.977 12 C 0.118 3.882 13 H 0.116 0.884 14 O -0.531 6.531 15 C 0.029 3.971 16 N -0.530 5.530 17 C 0.040 3.960 18 C 0.191 3.809 19 C -0.506 4.506 20 H 0.063 0.937 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.275 1.275 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.363 0.637 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.044 0.956 40 H -0.010 1.010 41 H 0.032 0.968 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.664 16.506 -8.201 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.108 4.108 4 C 0.006 3.994 5 F -0.111 7.111 6 C 0.082 3.918 7 F -0.106 7.106 8 C -0.240 4.240 9 C 0.110 3.890 10 O -0.197 6.197 11 C -0.053 4.053 12 C 0.057 3.943 13 H 0.134 0.866 14 O -0.334 6.334 15 C -0.101 4.101 16 N -0.254 5.254 17 C -0.108 4.108 18 C 0.066 3.934 19 C -0.544 4.544 20 H 0.081 0.919 21 C -0.146 4.146 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.008 0.992 41 H 0.050 0.950 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.592 16.599 -7.966 20.318 hybrid contribution 1.241 -0.670 0.478 1.489 sum 9.833 15.929 -7.488 20.162 Atomic orbital electron populations 1.20689 0.88841 1.03717 1.03266 1.19210 0.97607 0.89097 1.03811 1.20777 0.90932 0.99138 0.99975 1.17466 0.90473 0.80305 1.11135 1.91509 1.80161 1.44921 1.94522 1.17310 0.77284 0.92886 1.04279 1.91532 1.28003 1.97265 1.93794 1.21116 0.93898 0.98104 1.10876 1.18633 0.89109 0.86930 0.94324 1.86257 1.34778 1.11522 1.87101 1.23875 0.95447 0.83898 1.02075 1.21963 0.93564 0.88877 0.89862 0.86595 1.86742 1.35992 1.96245 1.14406 1.22566 0.94611 0.92700 1.00213 1.62019 1.25258 1.00251 1.37910 1.22204 0.96954 0.93916 0.97759 1.19812 0.92719 0.97985 0.82878 1.21086 1.15335 1.19627 0.98396 0.91896 1.24982 0.97682 0.96647 0.95301 1.69941 1.39758 1.41330 1.02923 0.86549 0.81861 0.81757 0.77182 1.20330 1.21368 1.20076 0.90491 0.91229 0.89920 0.83033 0.83161 0.91506 0.90828 0.79147 0.91709 0.94688 0.96995 0.90578 0.93768 0.99237 0.94974 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 36.01 0.35 -0.61 16 2 C -0.10 -0.97 5.89 -104.47 -0.62 -1.58 16 3 C -0.09 -0.81 9.67 -39.55 -0.38 -1.19 16 4 C 0.03 0.29 7.30 -39.36 -0.29 0.00 16 5 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 6 C 0.10 1.15 7.30 -39.38 -0.29 0.86 16 7 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 8 C -0.22 -2.31 9.01 -39.38 -0.35 -2.67 16 9 C 0.16 1.77 6.66 -39.24 -0.26 1.51 16 10 O -0.28 -3.61 9.14 -24.41 -0.22 -3.83 16 11 C 0.02 0.26 4.37 37.16 0.16 0.42 16 12 C 0.12 1.77 3.27 -26.73 -0.09 1.69 16 13 H 0.12 2.14 6.55 -51.93 -0.34 1.79 16 14 O -0.53 -8.45 13.20 -40.08 -0.53 -8.98 16 15 C 0.03 0.45 4.63 -3.82 -0.02 0.43 16 16 N -0.53 -10.87 4.60 -244.37 -1.12 -12.00 16 17 C 0.04 0.74 9.33 60.07 0.56 1.30 16 18 C 0.19 4.83 4.57 -4.98 -0.02 4.81 16 19 C -0.51 -14.08 8.53 -34.44 -0.29 -14.38 16 20 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 23 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.34 6.30 -52.48 -0.33 1.01 16 32 H 0.07 0.60 7.67 -51.92 -0.40 0.20 16 33 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 34 H 0.36 4.18 9.05 45.56 0.41 4.59 16 35 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 36 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 37 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 38 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 39 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 40 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 41 H 0.03 0.87 6.38 -51.93 -0.33 0.54 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -31.74 359.09 -7.30 -39.04 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.99 Total: 0.47 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.63 Total: -7.95 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.39 Total: -37.75 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.75 Total: -12.81 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -7.30 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.252 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds