Wall clock time and date at job start Tue Mar 31 2020 11:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38210 * 119.98707 * 2 1 4 4 C 1.38364 * 120.05205 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.98089 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.03796 * 0.04275 * 4 3 2 7 7 F 1.35100 * 120.00448 * 179.97438 * 6 4 3 8 8 C 1.38311 * 119.98841 * 359.95545 * 6 4 3 9 9 C 1.38676 * 119.99637 * 180.02562 * 2 1 3 10 10 O 1.35943 * 120.02117 * 359.97438 * 9 2 1 11 11 C 1.42897 * 117.00431 * 179.97438 * 10 9 2 12 12 C 1.53004 * 109.47454 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46718 * 304.99682 * 12 11 10 14 14 O 1.42891 * 109.47352 * 64.99808 * 12 11 10 15 15 C 1.53003 * 109.46829 * 185.00072 * 12 11 10 16 16 N 1.46906 * 109.46575 * 178.50616 * 15 12 11 17 17 C 1.46905 * 110.99483 * 164.00702 * 16 15 12 18 18 C 1.46897 * 110.99949 * 287.95866 * 16 15 12 19 19 C 1.50699 * 109.47061 * 170.00312 * 18 16 15 20 20 H 1.08001 * 119.99891 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00181 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99801 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00211 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46871 * 60.00185 * 23 21 19 25 25 H 1.48499 * 109.46964 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47172 * 299.99957 * 23 21 19 27 27 H 1.08991 * 109.47416 * 269.97669 * 1 2 3 28 28 H 1.08997 * 109.47246 * 29.98646 * 1 2 3 29 29 H 1.09001 * 109.46680 * 149.97788 * 1 2 3 30 30 H 1.08001 * 119.97888 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.02822 * 180.29857 * 8 6 4 32 32 H 1.09008 * 109.46792 * 300.00171 * 11 10 9 33 33 H 1.09004 * 109.47085 * 59.99692 * 11 10 9 34 34 H 0.96702 * 114.00495 * 59.99923 * 14 12 11 35 35 H 1.09000 * 109.46932 * 298.50254 * 15 12 11 36 36 H 1.08996 * 109.47276 * 58.50718 * 15 12 11 37 37 H 1.09006 * 109.46804 * 65.48666 * 17 16 15 38 38 H 1.08998 * 109.46363 * 185.48386 * 17 16 15 39 39 H 1.08993 * 109.47182 * 305.48596 * 17 16 15 40 40 H 1.08996 * 109.47106 * 290.00450 * 18 16 15 41 41 H 1.09004 * 109.47001 * 50.00413 * 18 16 15 42 42 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5814 1.1987 0.0005 5 9 4.2552 2.3696 0.0011 6 6 4.2771 -0.0013 0.0002 7 9 5.6281 0.0010 0.0002 8 6 3.5875 -1.2002 0.0002 9 6 2.2003 -1.2010 -0.0005 10 8 1.5210 -2.3785 -0.0005 11 6 2.2995 -3.5768 -0.0017 12 6 1.3678 -4.7904 -0.0021 13 1 0.6794 -4.7203 0.8400 14 8 0.6256 -4.8207 -1.2228 15 6 2.1973 -6.0701 0.1224 16 7 1.3006 -7.2332 0.1579 17 6 2.0395 -8.4757 -0.1034 18 6 0.5837 -7.3063 1.4380 19 6 -0.4961 -8.3538 1.3499 20 1 -0.6361 -8.9093 0.4344 21 6 -1.3059 -8.6023 2.4377 22 7 -1.1357 -7.9255 3.5524 23 14 -2.6449 -9.9002 2.3283 24 1 -2.0322 -11.2193 2.0284 25 1 -3.3695 -9.9742 3.6224 26 1 -3.5970 -9.5394 1.2473 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6572 2.1321 0.0004 31 1 4.1285 -2.1349 0.0048 32 1 2.9277 -3.6010 -0.8922 33 1 2.9291 -3.6019 0.8878 34 1 1.1753 -4.8827 -2.0160 35 1 2.8670 -6.1537 -0.7335 36 1 2.7836 -6.0351 1.0406 37 1 2.7450 -8.6563 0.7077 38 1 1.3390 -9.3082 -0.1679 39 1 2.5829 -8.3843 -1.0438 40 1 1.2828 -7.5710 2.2313 41 1 0.1338 -6.3382 1.6583 42 1 -1.7053 -8.1005 4.3179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591241488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:51 Heat of formation + Delta-G solvation = -172.386395 kcal Electronic energy + Delta-G solvation = -25940.018856 eV Core-core repulsion = 21748.705849 eV Total energy + Delta-G solvation = -4191.313006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54743 -49.61821 -41.43481 -39.48403 -38.19675 -36.84982 -34.60495 -33.63839 -31.93913 -30.81698 -29.37883 -27.98645 -27.50020 -25.67804 -24.25943 -23.13209 -22.71638 -21.73633 -19.64820 -18.77850 -18.57576 -18.31352 -17.70543 -17.40930 -17.25293 -16.95685 -16.66650 -16.20329 -16.05267 -15.84907 -15.59054 -15.44988 -14.99722 -14.96871 -14.83538 -14.29675 -14.28097 -14.03311 -13.90046 -13.14933 -13.11717 -12.94732 -12.79850 -12.72184 -12.62037 -12.54304 -12.46753 -12.30403 -12.10470 -11.80046 -11.51791 -11.33313 -10.91794 -10.58978 -10.08508 -9.20107 -8.97208 -8.19772 -6.28805 -0.20822 -0.08019 1.41014 1.44416 1.52029 1.88782 2.21444 2.41208 2.72978 3.12842 3.15251 3.24932 3.43627 3.57143 3.64094 3.82864 3.84045 3.95341 4.11131 4.29218 4.31343 4.41124 4.55216 4.57037 4.59517 4.64227 4.69982 4.77572 4.78165 4.84208 5.01036 5.10224 5.19708 5.20746 5.31188 5.31803 5.54505 5.65436 6.06645 6.17537 6.32886 6.63481 6.86620 7.01743 7.40476 8.91142 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002571 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.523371 B =10886.744987 C =11517.089392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.078 4.078 4 C 0.018 3.982 5 F -0.138 7.138 6 C 0.089 3.911 7 F -0.135 7.135 8 C -0.216 4.216 9 C 0.143 3.857 10 O -0.304 6.304 11 C 0.031 3.969 12 C 0.124 3.876 13 H 0.070 0.930 14 O -0.555 6.555 15 C 0.029 3.971 16 N -0.543 5.543 17 C 0.041 3.959 18 C 0.207 3.793 19 C -0.523 4.523 20 H 0.061 0.939 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.270 1.270 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.383 0.617 35 H 0.107 0.893 36 H 0.036 0.964 37 H 0.010 0.990 38 H 0.054 0.946 39 H 0.085 0.915 40 H -0.038 1.038 41 H 0.006 0.994 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 16.817 -9.630 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.096 4.096 4 C -0.002 4.002 5 F -0.117 7.117 6 C 0.068 3.932 7 F -0.113 7.113 8 C -0.235 4.235 9 C 0.096 3.904 10 O -0.217 6.217 11 C -0.045 4.045 12 C 0.063 3.937 13 H 0.088 0.912 14 O -0.361 6.361 15 C -0.100 4.100 16 N -0.267 5.267 17 C -0.107 4.107 18 C 0.081 3.919 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.209 1.209 26 H -0.195 1.195 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.198 0.802 31 H 0.183 0.817 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.104 0.896 40 H -0.021 1.021 41 H 0.024 0.976 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.061 16.912 -9.424 21.376 hybrid contribution 1.131 -0.706 0.878 1.596 sum 10.192 16.206 -8.546 20.966 Atomic orbital electron populations 1.20704 0.88133 1.04087 1.03438 1.19445 0.98245 0.89083 1.03317 1.21013 0.90260 0.99926 0.98412 1.17685 0.91137 0.79995 1.11424 1.91494 1.80393 1.45202 1.94607 1.17479 0.77084 0.93426 1.05181 1.91510 1.28543 1.97324 1.93971 1.21202 0.93616 0.98526 1.10202 1.18807 0.89517 0.86753 0.95279 1.86218 1.35664 1.12201 1.87616 1.23736 0.94392 0.82144 1.04198 1.21682 0.93027 0.90585 0.88355 0.91189 1.86688 1.37497 1.96431 1.15449 1.22690 0.94351 0.90905 1.02062 1.61889 1.27382 1.02739 1.34669 1.22224 0.96383 0.92328 0.99725 1.19419 0.92140 0.95820 0.84562 1.21450 1.16134 1.20175 0.98375 0.92082 1.25893 1.00091 0.98829 0.94903 1.70070 1.40895 1.42920 1.03654 0.85478 0.78825 0.79255 0.77329 1.19116 1.20855 1.19524 0.90393 0.88722 0.91680 0.80200 0.81679 0.88203 0.89739 0.76839 0.87456 0.94560 0.97160 0.92740 0.89595 1.02090 0.97572 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.79 71.24 0.70 -1.06 16 2 C -0.10 -1.86 5.89 -19.77 -0.12 -1.98 16 3 C -0.08 -1.25 9.67 22.29 0.22 -1.04 16 4 C 0.02 0.36 7.30 22.41 0.16 0.52 16 5 F -0.14 -3.00 17.18 44.97 0.77 -2.23 16 6 C 0.09 1.88 7.30 22.40 0.16 2.04 16 7 F -0.13 -3.10 17.18 44.97 0.77 -2.33 16 8 C -0.22 -4.20 9.01 22.40 0.20 -4.00 16 9 C 0.14 3.05 6.66 22.49 0.15 3.20 16 10 O -0.30 -7.51 9.14 -88.27 -0.81 -8.31 16 11 C 0.03 0.65 4.37 71.98 0.31 0.97 16 12 C 0.12 3.71 3.27 30.60 0.10 3.81 16 13 H 0.07 2.74 6.55 -2.39 -0.02 2.73 16 14 O -0.55 -17.27 13.20 -144.35 -1.90 -19.18 16 15 C 0.03 0.86 4.63 86.30 0.40 1.26 16 16 N -0.54 -22.15 4.60 -927.03 -4.27 -26.42 16 17 C 0.04 1.48 9.33 127.69 1.19 2.67 16 18 C 0.21 10.86 4.57 85.56 0.39 11.25 16 19 C -0.52 -29.77 8.53 25.60 0.22 -29.55 16 20 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 21 C 0.00 0.04 5.46 84.65 0.46 0.50 16 22 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 23 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 29 H 0.06 1.31 7.53 -2.39 -0.02 1.30 16 30 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.17 2.58 6.30 -2.91 -0.02 2.56 16 32 H 0.10 1.47 7.67 -2.38 -0.02 1.45 16 33 H 0.08 1.61 7.65 -2.38 -0.02 1.59 16 34 H 0.38 8.01 9.05 -74.06 -0.67 7.34 16 35 H 0.11 2.33 7.88 -2.39 -0.02 2.31 16 36 H 0.04 1.10 8.05 -2.39 -0.02 1.08 16 37 H 0.01 0.35 8.13 -2.38 -0.02 0.33 16 38 H 0.05 2.15 6.90 -2.39 -0.02 2.13 16 39 H 0.09 2.33 7.97 -2.39 -0.02 2.31 16 40 H -0.04 -2.19 8.11 -2.39 -0.02 -2.21 16 41 H 0.01 0.36 6.38 -2.38 -0.02 0.34 16 42 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -70.79 359.09 1.81 -68.98 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.38 Total: 10.48 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.55 Total: -11.41 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.98 Total: -82.58 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -2.71 Total: -27.49 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.55 Total: -4.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.79 1.81 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591241488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.404 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds