Wall clock time and date at job start Tue Mar 31 2020 10:31:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13592 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.39630 * 120.14769 * 260.27396 * 3 2 1
5 5 C 1.37950 * 119.84566 * 179.78818 * 4 3 2
6 6 C 1.38364 * 120.14941 * 0.49473 * 5 4 3
7 7 C 1.50696 * 119.84591 * 179.71945 * 6 5 4
8 8 N 1.46504 * 109.46889 * 270.01868 * 7 6 5
9 9 C 1.34785 * 119.99771 * 180.02562 * 8 7 6
10 10 O 1.21584 * 119.99648 * 0.02562 * 9 8 7
11 11 N 1.34775 * 119.99660 * 179.97438 * 9 8 7
12 12 C 1.47021 * 125.65146 * 0.03046 * 11 9 8
13 13 C 1.54320 * 107.27414 * 181.01962 * 12 11 9
14 14 C 1.55159 * 102.94175 * 22.19074 * 13 12 11
15 15 O 1.42898 * 111.00348 * 82.57165 * 14 13 12
16 16 C 1.50699 * 111.00921 * 206.38766 * 14 13 12
17 17 H 1.08004 * 119.99502 * 359.97438 * 16 14 13
18 18 C 1.37870 * 120.00499 * 180.02562 * 16 14 13
19 19 N 1.31517 * 119.99845 * 359.97438 * 18 16 14
20 20 Si 1.86797 * 120.00208 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47588 * 59.99450 * 20 18 16
22 22 H 1.48497 * 109.47298 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.46760 * 299.99518 * 20 18 16
24 24 C 1.47422 * 125.64618 * 179.71583 * 11 9 8
25 25 C 1.38364 * 120.30575 * 359.73795 * 6 5 4
26 26 C 1.37946 * 120.14920 * 0.02562 * 25 6 5
27 27 H 1.08004 * 120.07795 * 0.02562 * 4 3 2
28 28 H 1.08001 * 119.92773 * 180.20934 * 5 4 3
29 29 H 1.09003 * 109.47633 * 30.02053 * 7 6 5
30 30 H 1.09008 * 109.47044 * 150.02204 * 7 6 5
31 31 H 0.96991 * 120.00083 * 0.02562 * 8 7 6
32 32 H 1.09007 * 109.88068 * 300.43718 * 12 11 9
33 33 H 1.08994 * 109.88441 * 61.59880 * 12 11 9
34 34 H 1.08997 * 110.72314 * 140.55335 * 13 12 11
35 35 H 1.08997 * 110.72362 * 263.65101 * 13 12 11
36 36 H 0.96707 * 113.99950 * 180.02562 * 15 14 13
37 37 H 0.97001 * 120.00102 * 180.02562 * 19 18 16
38 38 H 1.09001 * 110.37194 * 274.75044 * 24 11 9
39 39 H 1.09002 * 110.36819 * 37.07639 * 24 11 9
40 40 H 1.07993 * 119.92708 * 179.97438 * 25 6 5
41 41 H 1.08003 * 120.07667 * 179.97438 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2691 0.2049 1.1901
5 6 4.6486 0.2000 1.1837
6 6 5.3374 0.0033 -0.0002
7 6 6.8443 0.0055 -0.0004
8 7 7.3306 1.3687 -0.2274
9 6 8.6554 1.6135 -0.2686
10 8 9.4468 0.7029 -0.1177
11 7 9.1027 2.8675 -0.4779
12 6 8.2602 4.0560 -0.6755
13 6 9.2051 5.2549 -0.9026
14 6 10.5159 4.5780 -1.3831
15 8 10.4601 4.2884 -2.7814
16 6 11.7149 5.4313 -1.0587
17 1 11.5838 6.3777 -0.5552
18 6 12.9792 5.0044 -1.4055
19 7 13.1388 3.8521 -2.0191
20 14 14.4654 6.0618 -1.0027
21 1 14.5455 6.2642 0.4663
22 1 15.6986 5.3835 -1.4764
23 1 14.3337 7.3782 -1.6773
24 6 10.5180 3.2756 -0.5403
25 6 4.6489 -0.1949 -1.1839
26 6 3.2694 -0.1972 -1.1910
27 1 2.7327 0.3627 2.1141
28 1 5.1923 0.3545 2.1040
29 1 7.2084 -0.3546 0.9619
30 1 7.2085 -0.6471 -0.7939
31 1 6.6992 2.0951 -0.3481
32 1 7.6216 3.9169 -1.5478
33 1 7.6489 4.2285 0.2103
34 1 8.8090 5.9178 -1.6718
35 1 9.3676 5.7995 0.0274
36 1 11.2573 3.8642 -3.1273
37 1 14.0283 3.5515 -2.2629
38 1 10.9014 3.4698 0.4614
39 1 11.1132 2.5066 -1.0328
40 1 5.1926 -0.3473 -2.1044
41 1 2.7332 -0.3516 -2.1157
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591909963.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:27
Heat of formation + Delta-G solvation = -20.200119 kcal
Electronic energy + Delta-G solvation = -25049.619835 eV
Core-core repulsion = 21315.595307 eV
Total energy + Delta-G solvation = -3734.024528 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.19886 -39.46378 -37.47101 -36.85701 -34.72718 -34.26247 -32.15545 -31.82567
-31.55438 -30.02962 -27.91744 -26.84974 -24.84294 -23.22525 -22.86016 -22.17415
-19.67405 -19.58410 -19.34674 -17.77912 -17.12295 -16.17685 -16.09902 -15.49846
-15.22864 -15.02700 -14.91774 -14.43389 -14.38262 -14.02489 -13.98202 -13.76043
-13.22487 -13.20198 -13.03883 -12.85148 -12.57544 -12.46150 -12.12771 -11.74401
-11.60301 -11.53298 -11.42098 -11.03790 -10.81930 -10.60994 -10.51535 -10.19485
-9.77422 -9.48745 -9.42557 -9.23668 -8.92205 -8.68777 -8.38290 -7.70625
-6.29850 -4.39462 0.25022 0.88831 2.27151 2.45578 3.13365 3.21779
3.27308 3.28981 3.45506 3.51420 3.69838 4.24383 4.32755 4.37867
4.42771 4.49273 4.88293 4.94028 4.97169 5.24690 5.33825 5.39367
5.57524 5.60408 5.63411 5.73720 5.79260 5.83069 6.01451 6.08856
6.14010 6.33590 6.49518 6.64615 6.69465 6.85551 6.92663 7.07734
7.21113 7.31351 7.58724 7.73684 7.99468 8.49140 8.64145 9.07934
9.30307 9.45621 10.77336
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.031629 B = 0.002418 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 885.051651 B =11576.812417 C =11868.739476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.419 5.419
2 C 0.255 3.745
3 C -0.028 4.028
4 C -0.072 4.072
5 C -0.101 4.101
6 C -0.071 4.071
7 C 0.176 3.824
8 N -0.749 5.749
9 C 0.717 3.283
10 O -0.596 6.596
11 N -0.626 5.626
12 C 0.106 3.894
13 C -0.117 4.117
14 C 0.250 3.750
15 O -0.584 6.584
16 C -0.538 4.538
17 H 0.066 0.934
18 C 0.071 3.929
19 N -0.894 5.894
20 Si 0.905 3.095
21 H -0.275 1.275
22 H -0.285 1.285
23 H -0.275 1.275
24 C 0.112 3.888
25 C -0.100 4.100
26 C -0.071 4.071
27 H 0.134 0.866
28 H 0.137 0.863
29 H 0.076 0.924
30 H 0.077 0.923
31 H 0.395 0.605
32 H 0.055 0.945
33 H 0.050 0.950
34 H 0.074 0.926
35 H 0.076 0.924
36 H 0.386 0.614
37 H 0.272 0.728
38 H 0.057 0.943
39 H 0.081 0.919
40 H 0.138 0.862
41 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.860 -6.147 4.062 17.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.094 5.094
2 C -0.060 4.060
3 C -0.032 4.032
4 C -0.092 4.092
5 C -0.119 4.119
6 C -0.072 4.072
7 C 0.052 3.948
8 N -0.407 5.407
9 C 0.419 3.581
10 O -0.475 6.475
11 N -0.362 5.362
12 C -0.018 4.018
13 C -0.155 4.155
14 C 0.209 3.791
15 O -0.394 6.394
16 C -0.577 4.577
17 H 0.085 0.915
18 C -0.132 4.132
19 N -0.533 5.533
20 Si 0.732 3.268
21 H -0.200 1.200
22 H -0.211 1.211
23 H -0.200 1.200
24 C -0.010 4.010
25 C -0.118 4.118
26 C -0.092 4.092
27 H 0.152 0.848
28 H 0.155 0.845
29 H 0.095 0.905
30 H 0.095 0.905
31 H 0.229 0.771
32 H 0.074 0.926
33 H 0.068 0.932
34 H 0.092 0.908
35 H 0.095 0.905
36 H 0.238 0.762
37 H 0.082 0.918
38 H 0.076 0.924
39 H 0.099 0.901
40 H 0.156 0.844
41 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -17.475 -6.759 4.167 19.194
hybrid contribution 1.436 0.573 0.129 1.551
sum -16.039 -6.186 4.296 17.720
Atomic orbital electron populations
1.81269 1.12118 1.08737 1.07279 1.25748 0.92700 0.93735 0.93817
1.16051 0.84244 1.07353 0.95512 1.21189 0.94209 0.97084 0.96741
1.21110 0.93419 0.98922 0.98468 1.20279 0.95816 0.97663 0.93490
1.20021 0.87517 0.84306 1.03004 1.45103 1.05830 1.09578 1.80142
1.15497 0.81807 0.82499 0.78334 1.90894 1.54738 1.43265 1.58621
1.47897 1.09939 1.04660 1.73745 1.21924 0.94130 0.86785 0.98924
1.22600 0.96097 0.95626 1.01171 1.19621 0.91095 0.88861 0.79548
1.86058 1.45552 1.83473 1.24360 1.21457 0.90731 1.05794 1.39689
0.91535 1.25082 0.99407 0.94891 0.93859 1.69557 1.24170 1.19630
1.39977 0.86443 0.81161 0.80289 0.78896 1.20013 1.21075 1.20008
1.23212 0.77712 0.99675 1.00447 1.21132 0.93437 0.98882 0.98378
1.21201 0.94217 0.97010 0.96728 0.84793 0.84478 0.90542 0.90492
0.77149 0.92618 0.93163 0.90782 0.90494 0.76158 0.91795 0.92440
0.90073 0.84397 0.84754
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -4.74 18.54 41.83 0.78 -3.97 16
2 C 0.26 2.26 15.33 -22.47 -0.34 1.92 16
3 C -0.03 -0.19 5.73 -106.93 -0.61 -0.81 16
4 C -0.07 -0.43 9.76 -39.17 -0.38 -0.81 16
5 C -0.10 -0.65 9.68 -39.64 -0.38 -1.03 16
6 C -0.07 -0.54 5.25 -104.53 -0.55 -1.09 16
7 C 0.18 1.84 5.79 -5.19 -0.03 1.81 16
8 N -0.75 -9.90 5.51 -66.41 -0.37 -10.27 16
9 C 0.72 13.58 8.49 -86.91 -0.74 12.84 16
10 O -0.60 -13.65 16.60 5.29 0.09 -13.57 16
11 N -0.63 -12.32 3.32 -176.10 -0.59 -12.91 16
12 C 0.11 1.74 6.15 -3.07 -0.02 1.72 16
13 C -0.12 -2.21 6.12 -24.90 -0.15 -2.37 16
14 C 0.25 5.86 0.89 -89.50 -0.08 5.78 16
15 O -0.58 -14.66 13.19 -35.23 -0.46 -15.12 16
16 C -0.54 -13.62 8.25 -34.44 -0.28 -13.91 16
17 H 0.07 1.64 7.77 -52.48 -0.41 1.23 16
18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16
19 N -0.89 -23.42 10.72 55.43 0.59 -22.82 16
20 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16
21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16
23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
24 C 0.11 2.61 5.65 -2.41 -0.01 2.59 16
25 C -0.10 -0.67 9.68 -39.64 -0.38 -1.05 16
26 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16
27 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16
28 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16
29 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16
30 H 0.08 0.86 8.08 -51.92 -0.42 0.44 16
31 H 0.39 4.41 7.45 -40.82 -0.30 4.11 16
32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
35 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16
36 H 0.39 10.10 6.93 45.56 0.32 10.41 16
37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16
38 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16
39 H 0.08 2.16 7.64 -51.93 -0.40 1.76 16
40 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16
41 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16
LS Contribution 357.53 15.07 5.39 5.39
Total: -1.00 -30.91 357.53 -8.60 -39.52
By element:
Atomic # 1 Polarization: 16.91 SS G_CDS: -4.56 Total: 12.35 kcal
Atomic # 6 Polarization: 10.94 SS G_CDS: -4.45 Total: 6.49 kcal
Atomic # 7 Polarization: -50.38 SS G_CDS: 0.42 Total: -49.96 kcal
Atomic # 8 Polarization: -28.31 SS G_CDS: -0.38 Total: -28.69 kcal
Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -30.91 -8.60 -39.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591909963.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.315 kcal
(2) G-P(sol) polarization free energy of solvation -30.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.599 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds