Wall clock time and date at job start Tue Mar 31 2020 10:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14769 * 260.27396 * 3 2 1 5 5 C 1.37950 * 119.84566 * 179.78818 * 4 3 2 6 6 C 1.38364 * 120.14941 * 0.49473 * 5 4 3 7 7 C 1.50696 * 119.84591 * 179.71945 * 6 5 4 8 8 N 1.46504 * 109.46889 * 270.01868 * 7 6 5 9 9 C 1.34785 * 119.99771 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99648 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99660 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.65146 * 0.03046 * 11 9 8 13 13 C 1.54320 * 107.27414 * 181.01962 * 12 11 9 14 14 C 1.55159 * 102.94175 * 22.19074 * 13 12 11 15 15 O 1.42898 * 111.00348 * 82.57165 * 14 13 12 16 16 C 1.50699 * 111.00921 * 206.38766 * 14 13 12 17 17 H 1.08004 * 119.99502 * 359.97438 * 16 14 13 18 18 C 1.37870 * 120.00499 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00208 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47588 * 59.99450 * 20 18 16 22 22 H 1.48497 * 109.47298 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46760 * 299.99518 * 20 18 16 24 24 C 1.47422 * 125.64618 * 179.71583 * 11 9 8 25 25 C 1.38364 * 120.30575 * 359.73795 * 6 5 4 26 26 C 1.37946 * 120.14920 * 0.02562 * 25 6 5 27 27 H 1.08004 * 120.07795 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92773 * 180.20934 * 5 4 3 29 29 H 1.09003 * 109.47633 * 30.02053 * 7 6 5 30 30 H 1.09008 * 109.47044 * 150.02204 * 7 6 5 31 31 H 0.96991 * 120.00083 * 0.02562 * 8 7 6 32 32 H 1.09007 * 109.88068 * 300.43718 * 12 11 9 33 33 H 1.08994 * 109.88441 * 61.59880 * 12 11 9 34 34 H 1.08997 * 110.72314 * 140.55335 * 13 12 11 35 35 H 1.08997 * 110.72362 * 263.65101 * 13 12 11 36 36 H 0.96707 * 113.99950 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00102 * 180.02562 * 19 18 16 38 38 H 1.09001 * 110.37194 * 274.75044 * 24 11 9 39 39 H 1.09002 * 110.36819 * 37.07639 * 24 11 9 40 40 H 1.07993 * 119.92708 * 179.97438 * 25 6 5 41 41 H 1.08003 * 120.07667 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2049 1.1901 5 6 4.6486 0.2000 1.1837 6 6 5.3374 0.0033 -0.0002 7 6 6.8443 0.0055 -0.0004 8 7 7.3306 1.3687 -0.2274 9 6 8.6554 1.6135 -0.2686 10 8 9.4468 0.7029 -0.1177 11 7 9.1027 2.8675 -0.4779 12 6 8.2602 4.0560 -0.6755 13 6 9.2051 5.2549 -0.9026 14 6 10.5159 4.5780 -1.3831 15 8 10.4601 4.2884 -2.7814 16 6 11.7149 5.4313 -1.0587 17 1 11.5838 6.3777 -0.5552 18 6 12.9792 5.0044 -1.4055 19 7 13.1388 3.8521 -2.0191 20 14 14.4654 6.0618 -1.0027 21 1 14.5455 6.2642 0.4663 22 1 15.6986 5.3835 -1.4764 23 1 14.3337 7.3782 -1.6773 24 6 10.5180 3.2756 -0.5403 25 6 4.6489 -0.1949 -1.1839 26 6 3.2694 -0.1972 -1.1910 27 1 2.7327 0.3627 2.1141 28 1 5.1923 0.3545 2.1040 29 1 7.2084 -0.3546 0.9619 30 1 7.2085 -0.6471 -0.7939 31 1 6.6992 2.0951 -0.3481 32 1 7.6216 3.9169 -1.5478 33 1 7.6489 4.2285 0.2103 34 1 8.8090 5.9178 -1.6718 35 1 9.3676 5.7995 0.0274 36 1 11.2573 3.8642 -3.1273 37 1 14.0283 3.5515 -2.2629 38 1 10.9014 3.4698 0.4614 39 1 11.1132 2.5066 -1.0328 40 1 5.1926 -0.3473 -2.1044 41 1 2.7332 -0.3516 -2.1157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591909963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:27 Heat of formation + Delta-G solvation = -20.200119 kcal Electronic energy + Delta-G solvation = -25049.619835 eV Core-core repulsion = 21315.595307 eV Total energy + Delta-G solvation = -3734.024528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19886 -39.46378 -37.47101 -36.85701 -34.72718 -34.26247 -32.15545 -31.82567 -31.55438 -30.02962 -27.91744 -26.84974 -24.84294 -23.22525 -22.86016 -22.17415 -19.67405 -19.58410 -19.34674 -17.77912 -17.12295 -16.17685 -16.09902 -15.49846 -15.22864 -15.02700 -14.91774 -14.43389 -14.38262 -14.02489 -13.98202 -13.76043 -13.22487 -13.20198 -13.03883 -12.85148 -12.57544 -12.46150 -12.12771 -11.74401 -11.60301 -11.53298 -11.42098 -11.03790 -10.81930 -10.60994 -10.51535 -10.19485 -9.77422 -9.48745 -9.42557 -9.23668 -8.92205 -8.68777 -8.38290 -7.70625 -6.29850 -4.39462 0.25022 0.88831 2.27151 2.45578 3.13365 3.21779 3.27308 3.28981 3.45506 3.51420 3.69838 4.24383 4.32755 4.37867 4.42771 4.49273 4.88293 4.94028 4.97169 5.24690 5.33825 5.39367 5.57524 5.60408 5.63411 5.73720 5.79260 5.83069 6.01451 6.08856 6.14010 6.33590 6.49518 6.64615 6.69465 6.85551 6.92663 7.07734 7.21113 7.31351 7.58724 7.73684 7.99468 8.49140 8.64145 9.07934 9.30307 9.45621 10.77336 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.002418 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.051651 B =11576.812417 C =11868.739476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.255 3.745 3 C -0.028 4.028 4 C -0.072 4.072 5 C -0.101 4.101 6 C -0.071 4.071 7 C 0.176 3.824 8 N -0.749 5.749 9 C 0.717 3.283 10 O -0.596 6.596 11 N -0.626 5.626 12 C 0.106 3.894 13 C -0.117 4.117 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.112 3.888 25 C -0.100 4.100 26 C -0.071 4.071 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.395 0.605 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.272 0.728 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 -6.147 4.062 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.060 4.060 3 C -0.032 4.032 4 C -0.092 4.092 5 C -0.119 4.119 6 C -0.072 4.072 7 C 0.052 3.948 8 N -0.407 5.407 9 C 0.419 3.581 10 O -0.475 6.475 11 N -0.362 5.362 12 C -0.018 4.018 13 C -0.155 4.155 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.118 4.118 26 C -0.092 4.092 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.229 0.771 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.475 -6.759 4.167 19.194 hybrid contribution 1.436 0.573 0.129 1.551 sum -16.039 -6.186 4.296 17.720 Atomic orbital electron populations 1.81269 1.12118 1.08737 1.07279 1.25748 0.92700 0.93735 0.93817 1.16051 0.84244 1.07353 0.95512 1.21189 0.94209 0.97084 0.96741 1.21110 0.93419 0.98922 0.98468 1.20279 0.95816 0.97663 0.93490 1.20021 0.87517 0.84306 1.03004 1.45103 1.05830 1.09578 1.80142 1.15497 0.81807 0.82499 0.78334 1.90894 1.54738 1.43265 1.58621 1.47897 1.09939 1.04660 1.73745 1.21924 0.94130 0.86785 0.98924 1.22600 0.96097 0.95626 1.01171 1.19621 0.91095 0.88861 0.79548 1.86058 1.45552 1.83473 1.24360 1.21457 0.90731 1.05794 1.39689 0.91535 1.25082 0.99407 0.94891 0.93859 1.69557 1.24170 1.19630 1.39977 0.86443 0.81161 0.80289 0.78896 1.20013 1.21075 1.20008 1.23212 0.77712 0.99675 1.00447 1.21132 0.93437 0.98882 0.98378 1.21201 0.94217 0.97010 0.96728 0.84793 0.84478 0.90542 0.90492 0.77149 0.92618 0.93163 0.90782 0.90494 0.76158 0.91795 0.92440 0.90073 0.84397 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.74 18.54 41.83 0.78 -3.97 16 2 C 0.26 2.26 15.33 -22.47 -0.34 1.92 16 3 C -0.03 -0.19 5.73 -106.93 -0.61 -0.81 16 4 C -0.07 -0.43 9.76 -39.17 -0.38 -0.81 16 5 C -0.10 -0.65 9.68 -39.64 -0.38 -1.03 16 6 C -0.07 -0.54 5.25 -104.53 -0.55 -1.09 16 7 C 0.18 1.84 5.79 -5.19 -0.03 1.81 16 8 N -0.75 -9.90 5.51 -66.41 -0.37 -10.27 16 9 C 0.72 13.58 8.49 -86.91 -0.74 12.84 16 10 O -0.60 -13.65 16.60 5.29 0.09 -13.57 16 11 N -0.63 -12.32 3.32 -176.10 -0.59 -12.91 16 12 C 0.11 1.74 6.15 -3.07 -0.02 1.72 16 13 C -0.12 -2.21 6.12 -24.90 -0.15 -2.37 16 14 C 0.25 5.86 0.89 -89.50 -0.08 5.78 16 15 O -0.58 -14.66 13.19 -35.23 -0.46 -15.12 16 16 C -0.54 -13.62 8.25 -34.44 -0.28 -13.91 16 17 H 0.07 1.64 7.77 -52.48 -0.41 1.23 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -23.42 10.72 55.43 0.59 -22.82 16 20 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.11 2.61 5.65 -2.41 -0.01 2.59 16 25 C -0.10 -0.67 9.68 -39.64 -0.38 -1.05 16 26 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 27 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 28 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.08 0.86 8.08 -51.92 -0.42 0.44 16 31 H 0.39 4.41 7.45 -40.82 -0.30 4.11 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 36 H 0.39 10.10 6.93 45.56 0.32 10.41 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 39 H 0.08 2.16 7.64 -51.93 -0.40 1.76 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -30.91 357.53 -8.60 -39.52 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -4.56 Total: 12.35 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -4.45 Total: 6.49 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.42 Total: -49.96 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.38 Total: -28.69 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.91 -8.60 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591909963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.315 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds