Wall clock time and date at job start Tue Mar 31 2020 10:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14769 * 260.27396 * 3 2 1 5 5 C 1.37950 * 119.84566 * 179.78818 * 4 3 2 6 6 C 1.38364 * 120.14941 * 0.49473 * 5 4 3 7 7 C 1.50696 * 119.84591 * 179.71945 * 6 5 4 8 8 N 1.46504 * 109.46889 * 270.01868 * 7 6 5 9 9 C 1.34785 * 119.99771 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99648 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99660 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.65146 * 0.03046 * 11 9 8 13 13 C 1.54320 * 107.27414 * 181.01962 * 12 11 9 14 14 C 1.55159 * 102.94175 * 22.19074 * 13 12 11 15 15 O 1.42898 * 111.00348 * 82.57165 * 14 13 12 16 16 C 1.50699 * 111.00921 * 206.38766 * 14 13 12 17 17 H 1.08004 * 119.99502 * 359.97438 * 16 14 13 18 18 C 1.37870 * 120.00499 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00208 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47588 * 59.99450 * 20 18 16 22 22 H 1.48497 * 109.47298 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46760 * 299.99518 * 20 18 16 24 24 C 1.47422 * 125.64618 * 179.71583 * 11 9 8 25 25 C 1.38364 * 120.30575 * 359.73795 * 6 5 4 26 26 C 1.37946 * 120.14920 * 0.02562 * 25 6 5 27 27 H 1.08004 * 120.07795 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92773 * 180.20934 * 5 4 3 29 29 H 1.09003 * 109.47633 * 30.02053 * 7 6 5 30 30 H 1.09008 * 109.47044 * 150.02204 * 7 6 5 31 31 H 0.96991 * 120.00083 * 0.02562 * 8 7 6 32 32 H 1.09007 * 109.88068 * 300.43718 * 12 11 9 33 33 H 1.08994 * 109.88441 * 61.59880 * 12 11 9 34 34 H 1.08997 * 110.72314 * 140.55335 * 13 12 11 35 35 H 1.08997 * 110.72362 * 263.65101 * 13 12 11 36 36 H 0.96707 * 113.99950 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00102 * 180.02562 * 19 18 16 38 38 H 1.09001 * 110.37194 * 274.75044 * 24 11 9 39 39 H 1.09002 * 110.36819 * 37.07639 * 24 11 9 40 40 H 1.07993 * 119.92708 * 179.97438 * 25 6 5 41 41 H 1.08003 * 120.07667 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2049 1.1901 5 6 4.6486 0.2000 1.1837 6 6 5.3374 0.0033 -0.0002 7 6 6.8443 0.0055 -0.0004 8 7 7.3306 1.3687 -0.2274 9 6 8.6554 1.6135 -0.2686 10 8 9.4468 0.7029 -0.1177 11 7 9.1027 2.8675 -0.4779 12 6 8.2602 4.0560 -0.6755 13 6 9.2051 5.2549 -0.9026 14 6 10.5159 4.5780 -1.3831 15 8 10.4601 4.2884 -2.7814 16 6 11.7149 5.4313 -1.0587 17 1 11.5838 6.3777 -0.5552 18 6 12.9792 5.0044 -1.4055 19 7 13.1388 3.8521 -2.0191 20 14 14.4654 6.0618 -1.0027 21 1 14.5455 6.2642 0.4663 22 1 15.6986 5.3835 -1.4764 23 1 14.3337 7.3782 -1.6773 24 6 10.5180 3.2756 -0.5403 25 6 4.6489 -0.1949 -1.1839 26 6 3.2694 -0.1972 -1.1910 27 1 2.7327 0.3627 2.1141 28 1 5.1923 0.3545 2.1040 29 1 7.2084 -0.3546 0.9619 30 1 7.2085 -0.6471 -0.7939 31 1 6.6992 2.0951 -0.3481 32 1 7.6216 3.9169 -1.5478 33 1 7.6489 4.2285 0.2103 34 1 8.8090 5.9178 -1.6718 35 1 9.3676 5.7995 0.0274 36 1 11.2573 3.8642 -3.1273 37 1 14.0283 3.5515 -2.2629 38 1 10.9014 3.4698 0.4614 39 1 11.1132 2.5066 -1.0328 40 1 5.1926 -0.3473 -2.1044 41 1 2.7332 -0.3516 -2.1157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591909963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:26 Heat of formation + Delta-G solvation = -41.203141 kcal Electronic energy + Delta-G solvation = -25050.530594 eV Core-core repulsion = 21315.595307 eV Total energy + Delta-G solvation = -3734.935287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28056 -40.45723 -39.03831 -37.67051 -36.01775 -35.82649 -34.11461 -32.77147 -32.04565 -31.50908 -29.55317 -27.96476 -26.48839 -24.18684 -23.71878 -23.08233 -21.40752 -20.97234 -19.91162 -19.31753 -18.86307 -17.35238 -17.00631 -16.88719 -16.49221 -16.43324 -16.06472 -15.53261 -15.24634 -15.14099 -15.03579 -14.72645 -14.57140 -14.43382 -14.10317 -13.96445 -13.65512 -13.54747 -13.42510 -13.22349 -13.17524 -12.79360 -12.48353 -12.38497 -12.29684 -12.19104 -12.04996 -12.00176 -11.33217 -11.18363 -10.60801 -10.31190 -10.15391 -9.95571 -9.88254 -9.26256 -8.22430 -6.39086 -0.33467 0.41335 1.45916 1.46753 1.54703 1.59248 1.64672 2.02986 2.21917 2.40959 2.82957 2.86664 3.03818 3.25761 3.63940 3.85795 3.86967 3.98635 4.16767 4.23743 4.34715 4.37039 4.40059 4.67907 4.69284 4.73126 4.81096 4.83573 5.08936 5.10090 5.15038 5.19540 5.33260 5.35064 5.43436 5.49180 5.51428 5.58001 5.80619 5.82942 6.06750 6.23377 6.41675 6.67958 7.12455 7.33667 7.43389 7.62922 8.82832 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.002418 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.051651 B =11576.812417 C =11868.739476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.280 3.720 3 C -0.033 4.033 4 C -0.064 4.064 5 C -0.097 4.097 6 C -0.073 4.073 7 C 0.175 3.825 8 N -0.725 5.725 9 C 0.711 3.289 10 O -0.644 6.644 11 N -0.633 5.633 12 C 0.109 3.891 13 C -0.112 4.112 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.555 4.555 17 H 0.070 0.930 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.270 1.270 24 C 0.126 3.874 25 C -0.100 4.100 26 C -0.065 4.065 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.409 0.591 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.377 0.623 37 H 0.270 0.730 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.145 0.855 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -5.278 4.835 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.035 4.035 3 C -0.037 4.037 4 C -0.084 4.084 5 C -0.116 4.116 6 C -0.074 4.074 7 C 0.052 3.948 8 N -0.382 5.382 9 C 0.413 3.587 10 O -0.526 6.526 11 N -0.369 5.369 12 C -0.013 4.013 13 C -0.150 4.150 14 C 0.191 3.809 15 O -0.399 6.399 16 C -0.594 4.594 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.213 1.213 23 H -0.195 1.195 24 C 0.002 3.998 25 C -0.119 4.119 26 C -0.085 4.085 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.245 0.755 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.162 0.838 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.298 -5.868 4.945 20.767 hybrid contribution 1.956 0.262 -0.110 1.977 sum -17.342 -5.606 4.834 18.855 Atomic orbital electron populations 1.81298 1.13546 1.10574 1.08837 1.25955 0.92831 0.92307 0.92392 1.16138 0.83179 1.08075 0.96285 1.21354 0.94000 0.95945 0.97121 1.21210 0.93563 0.98317 0.98461 1.20029 0.93792 0.99130 0.94487 1.20112 0.89570 0.82499 1.02611 1.44931 1.03724 1.11279 1.78280 1.15719 0.83251 0.81619 0.78111 1.90858 1.56529 1.44621 1.60629 1.47825 1.08866 1.06064 1.74133 1.22096 0.93411 0.84211 1.01623 1.22604 0.94031 0.96611 1.01771 1.19886 0.93247 0.89114 0.78642 1.86046 1.44964 1.83372 1.25549 1.21820 0.91756 1.06177 1.39608 0.91159 1.25834 1.02003 0.95886 0.93876 1.69678 1.24406 1.20877 1.40793 0.85509 0.77973 0.78796 0.78758 1.19506 1.21255 1.19452 1.22715 0.79611 0.98509 0.98968 1.21198 0.93641 0.98650 0.98375 1.21331 0.93961 0.96093 0.97161 0.82993 0.83263 0.90720 0.91291 0.75477 0.90915 0.89039 0.89843 0.89269 0.77262 0.92038 0.93917 0.94412 0.83754 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.08 18.54 19.00 0.35 -9.73 16 2 C 0.28 4.43 15.33 88.33 1.35 5.78 16 3 C -0.03 -0.37 5.73 -21.36 -0.12 -0.49 16 4 C -0.06 -0.56 9.76 22.54 0.22 -0.34 16 5 C -0.10 -0.94 9.68 22.23 0.22 -0.73 16 6 C -0.07 -0.92 5.25 -19.81 -0.10 -1.02 16 7 C 0.18 3.41 5.79 85.63 0.50 3.90 16 8 N -0.72 -17.77 5.51 -482.27 -2.66 -20.43 16 9 C 0.71 26.60 8.49 179.05 1.52 28.12 16 10 O -0.64 -30.15 16.60 -3.98 -0.07 -30.21 16 11 N -0.63 -24.45 3.32 -829.32 -2.76 -27.21 16 12 C 0.11 3.25 6.15 86.73 0.53 3.78 16 13 C -0.11 -4.02 6.12 31.78 0.19 -3.83 16 14 C 0.23 10.91 0.89 -10.07 -0.01 10.90 16 15 O -0.59 -30.02 13.19 -148.98 -1.97 -31.99 16 16 C -0.56 -28.20 8.25 25.60 0.21 -27.99 16 17 H 0.07 3.42 7.77 -2.91 -0.02 3.40 16 18 C 0.02 1.26 5.30 84.65 0.45 1.71 16 19 N -0.92 -49.50 10.72 21.45 0.23 -49.27 16 20 Si 0.96 41.06 29.54 68.60 2.03 43.08 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 24 C 0.13 6.03 5.65 86.93 0.49 6.52 16 25 C -0.10 -1.08 9.68 22.23 0.22 -0.87 16 26 C -0.07 -0.63 9.76 22.54 0.22 -0.41 16 27 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 28 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 30 H 0.07 1.48 8.08 -2.38 -0.02 1.46 16 31 H 0.41 7.81 7.45 -92.71 -0.69 7.12 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.09 2.94 8.02 -2.39 -0.02 2.92 16 36 H 0.38 20.42 6.93 -74.05 -0.51 19.90 16 37 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.04 2.11 8.04 -2.39 -0.02 2.09 16 39 H 0.04 2.10 7.64 -2.39 -0.02 2.09 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -69.40 357.53 0.92 -68.48 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.12 Total: 32.24 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 5.88 Total: 25.04 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -4.83 Total: -106.64 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -2.03 Total: -62.20 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -69.40 0.92 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591909963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.275 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds