Wall clock time and date at job start Tue Mar 31 2020 11:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38319 * 119.87706 * 2 1 4 4 C 1.38022 * 120.12104 * 180.02562 * 3 2 1 5 5 C 1.39321 * 119.87677 * 0.02562 * 4 3 2 6 6 C 1.48431 * 120.11939 * 180.02562 * 5 4 3 7 7 N 1.30814 * 126.33736 * 0.02688 * 6 5 4 8 8 O 1.21264 * 110.33992 * 179.97438 * 7 6 5 9 9 C 1.34065 * 109.97440 * 0.02562 * 8 7 6 10 10 N 1.37388 * 126.55794 * 180.02562 * 9 8 7 11 11 C 1.47440 * 110.99914 * 120.14893 * 10 9 8 12 12 C 1.54317 * 107.23368 * 236.74083 * 11 10 9 13 13 C 1.55144 * 103.01861 * 337.71644 * 12 11 10 14 14 O 1.42902 * 110.99037 * 277.56168 * 13 12 11 15 15 C 1.50699 * 110.99303 * 153.74518 * 13 12 11 16 16 H 1.08001 * 119.99784 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99845 * 180.02562 * 15 13 12 18 18 N 1.31511 * 120.00028 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99629 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47419 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47566 * 119.99599 * 19 17 15 22 22 H 1.48500 * 109.47005 * 239.99446 * 19 17 15 23 23 C 1.47842 * 111.00031 * 359.30261 * 10 9 8 24 24 N 1.31997 * 106.88440 * 0.26046 * 9 8 7 25 25 C 1.39318 * 119.76352 * 0.28018 * 5 4 3 26 26 C 1.38025 * 119.87864 * 359.42233 * 25 5 4 27 27 H 1.08997 * 109.47374 * 90.00330 * 1 2 3 28 28 H 1.09004 * 109.46243 * 209.99738 * 1 2 3 29 29 H 1.09000 * 109.47058 * 329.99179 * 1 2 3 30 30 H 1.07997 * 119.93972 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.06179 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.89463 * 117.33672 * 11 10 9 33 33 H 1.09001 * 110.02673 * 356.21905 * 11 10 9 34 34 H 1.08999 * 110.70846 * 96.09223 * 12 11 10 35 35 H 1.09000 * 110.71111 * 219.33808 * 12 11 10 36 36 H 0.96704 * 113.99742 * 179.97438 * 14 13 12 37 37 H 0.96999 * 119.99649 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.37187 * 265.19302 * 23 10 9 39 39 H 1.08998 * 110.37031 * 27.53645 * 23 10 9 40 40 H 1.07996 * 120.06486 * 179.71797 * 25 5 4 41 41 H 1.08002 * 119.94373 * 180.29257 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5763 1.2052 -0.0005 5 6 4.2754 0.0001 -0.0016 6 6 5.7597 0.0002 -0.0016 7 7 6.5348 1.0540 -0.0002 8 8 7.7005 0.7198 -0.0001 9 6 7.7935 -0.6176 -0.0021 10 7 8.9512 -1.3574 -0.0022 11 6 9.0231 -2.2263 1.1868 12 6 10.3331 -1.8821 1.9261 13 6 11.2042 -1.2411 0.8138 14 8 11.8472 -2.2445 0.0252 15 6 12.2143 -0.2890 1.4004 16 1 12.2541 -0.1347 2.4686 17 6 13.0870 0.3859 0.5733 18 7 13.0382 0.1983 -0.7275 19 14 14.3395 1.5655 1.3005 20 1 14.1899 1.5977 2.7776 21 1 15.7093 1.1104 0.9513 22 1 14.1150 2.9266 0.7508 23 6 10.1409 -0.4797 -0.0165 24 7 6.5601 -1.0877 -0.0092 25 6 3.5764 -1.2050 -0.0081 26 6 2.1962 -1.1993 -0.0013 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.6531 2.1329 0.0004 31 1 4.1133 2.1422 -0.0010 32 1 9.0337 -3.2726 0.8814 33 1 8.1695 -2.0389 1.8382 34 1 10.1467 -1.1684 2.7287 35 1 10.8057 -2.7846 2.3135 36 1 12.4026 -1.8917 -0.6835 37 1 13.6524 0.6728 -1.3092 38 1 10.4913 -0.3322 -1.0381 39 1 9.9109 0.4787 0.4488 40 1 4.1135 -2.1419 -0.0135 41 1 1.6533 -2.1329 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:34 Heat of formation + Delta-G solvation = 53.429096 kcal Electronic energy + Delta-G solvation = -25569.749584 eV Core-core repulsion = 21838.917859 eV Total energy + Delta-G solvation = -3730.831726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.01259 -39.48420 -38.99198 -35.68059 -35.10648 -33.02908 -32.25441 -31.61566 -31.12989 -29.39523 -28.19361 -27.40730 -25.12542 -23.89684 -23.15575 -22.36415 -21.46255 -20.32123 -19.69491 -18.07390 -17.75438 -17.11819 -16.17748 -15.97368 -15.39887 -15.29606 -15.06164 -14.82618 -14.06993 -14.05618 -13.61207 -13.57064 -13.25710 -13.04772 -12.72417 -12.67604 -12.52136 -12.18973 -11.92481 -11.63761 -11.53881 -11.41011 -11.23932 -11.09998 -10.91677 -10.79152 -10.64703 -10.54539 -10.33795 -10.03175 -9.51775 -9.12996 -8.76674 -8.69205 -8.41489 -8.15415 -6.39577 -4.48559 0.70510 1.23448 1.64992 2.61933 2.95917 3.14450 3.24021 3.27302 3.60037 3.70340 4.07467 4.19865 4.61147 4.63434 4.82003 4.85492 4.88169 5.16080 5.23503 5.27617 5.30167 5.44627 5.48549 5.54522 5.61372 5.70165 5.83226 5.85040 5.92364 6.09578 6.12996 6.26313 6.30929 6.36756 6.41592 6.51440 6.59453 6.75211 6.86259 7.05105 7.17986 7.25355 7.64818 7.87700 8.54012 8.56491 9.21959 9.38542 10.68170 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.002785 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.210142 B =10049.956627 C =10613.780967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.016 4.016 6 C 0.216 3.784 7 N -0.390 5.390 8 O 0.049 5.951 9 C 0.373 3.627 10 N -0.413 5.413 11 C 0.060 3.940 12 C -0.130 4.130 13 C 0.258 3.742 14 O -0.579 6.579 15 C -0.539 4.539 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.020 3.980 24 N -0.502 5.502 25 C -0.072 4.072 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.387 0.613 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 -0.670 1.447 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.018 4.018 6 C -0.055 4.055 7 N -0.105 5.105 8 O -0.003 6.003 9 C 0.065 3.935 10 N -0.141 5.141 11 C -0.065 4.065 12 C -0.168 4.168 13 C 0.217 3.783 14 O -0.389 6.389 15 C -0.577 4.577 16 H 0.087 0.913 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.105 4.105 24 N -0.243 5.243 25 C -0.091 4.091 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.366 -0.804 1.238 19.422 hybrid contribution 1.307 1.457 0.254 1.974 sum -18.059 0.653 1.492 18.132 Atomic orbital electron populations 1.20825 0.90992 1.02917 1.02476 1.20079 0.96259 0.93193 0.98101 1.20926 0.93476 0.97816 1.02055 1.21186 0.94193 0.97346 0.97408 1.17362 0.85373 0.94499 1.04546 1.23621 0.96256 0.84455 1.01150 1.74786 0.89076 1.22721 1.23908 1.85437 1.22080 1.25003 1.67747 1.26735 0.93314 0.80726 0.92731 1.60465 0.98446 1.17058 1.38102 1.22955 0.98814 0.97329 0.87410 1.22856 0.93794 1.01842 0.98338 1.19473 0.88283 0.84897 0.85680 1.86092 1.66644 1.36260 1.49871 1.21540 1.17188 1.24627 0.94331 0.91322 1.25068 0.97055 0.96179 0.94827 1.69551 1.38118 1.42994 1.02811 0.86320 0.80720 0.80272 0.79477 1.19545 1.20620 1.20680 1.24309 0.86520 0.94505 1.05150 1.72311 0.97988 1.26949 1.27041 1.21241 0.93934 0.97642 0.96318 1.20981 0.93621 0.97785 1.01927 0.90959 0.91367 0.91423 0.85484 0.85135 0.88875 0.92169 0.90689 0.89979 0.76046 0.91808 0.87905 0.91362 0.84548 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.71 5.88 -104.56 -0.62 -1.33 16 3 C -0.12 -1.27 9.68 -39.63 -0.38 -1.65 16 4 C -0.08 -1.04 9.69 -39.26 -0.38 -1.42 16 5 C -0.02 -0.24 5.88 -104.89 -0.62 -0.85 16 6 C 0.22 3.87 7.79 -156.21 -1.22 2.66 16 7 N -0.39 -7.44 11.84 31.18 0.37 -7.07 16 8 O 0.05 0.99 9.94 17.02 0.17 1.16 16 9 C 0.37 7.41 7.16 -87.43 -0.63 6.79 16 10 N -0.41 -8.33 5.22 -172.37 -0.90 -9.23 16 11 C 0.06 1.08 6.80 -2.84 -0.02 1.06 16 12 C -0.13 -2.52 6.12 -24.91 -0.15 -2.68 16 13 C 0.26 5.94 0.89 -89.63 -0.08 5.86 16 14 O -0.58 -14.12 13.18 -35.23 -0.46 -14.59 16 15 C -0.54 -13.42 8.25 -34.44 -0.28 -13.71 16 16 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 17 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 18 N -0.90 -22.56 10.71 55.43 0.59 -21.96 16 19 Si 0.90 19.69 29.54 -169.99 -5.02 14.66 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.02 0.44 5.22 -2.30 -0.01 0.43 16 24 N -0.50 -9.51 11.17 -13.10 -0.15 -9.65 16 25 C -0.07 -0.91 9.70 -39.26 -0.38 -1.29 16 26 C -0.13 -1.27 9.68 -39.63 -0.38 -1.65 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.05 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.13 1.64 7.87 -52.49 -0.41 1.23 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.01 7.51 -51.93 -0.39 0.62 16 34 H 0.07 1.39 8.01 -51.93 -0.42 0.97 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.39 9.69 6.94 45.56 0.32 10.01 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.10 2.45 7.74 -51.93 -0.40 2.05 16 39 H 0.07 1.54 6.84 -51.93 -0.36 1.18 16 40 H 0.14 1.73 7.87 -52.49 -0.41 1.32 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -27.03 346.53 -9.63 -36.66 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.57 Total: 11.23 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.89 Total: -6.45 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.08 Total: -47.91 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.30 Total: -13.42 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.03 -9.63 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.091 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds