Wall clock time and date at job start Tue Mar 31 2020 11:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35833 * 118.70328 * 2 1 4 4 C 1.40843 * 120.55715 * 179.97438 * 3 2 1 5 5 C 1.38421 * 134.89787 * 180.02562 * 4 3 2 6 6 N 1.33889 * 107.84409 * 180.02562 * 5 4 3 7 7 H 0.97003 * 125.01696 * 180.02562 * 6 5 4 8 8 N 1.39978 * 109.96366 * 359.79368 * 6 5 4 9 9 C 1.31481 * 109.01395 * 0.35620 * 8 6 5 10 10 C 1.46668 * 134.99189 * 179.97438 * 9 8 6 11 11 C 1.47166 * 120.72304 * 359.65823 * 10 9 8 12 12 O 1.21646 * 120.00341 * 43.83691 * 11 10 9 13 13 N 1.34781 * 120.00010 * 223.84229 * 11 10 9 14 14 C 1.47016 * 125.64554 * 5.00350 * 13 11 10 15 15 C 1.54333 * 107.26448 * 178.85385 * 14 13 11 16 16 C 1.55158 * 103.01994 * 338.14209 * 15 14 13 17 17 O 1.42908 * 111.00191 * 277.23022 * 16 15 14 18 18 C 1.50703 * 111.00330 * 153.38427 * 16 15 14 19 19 H 1.07996 * 119.99952 * 6.34612 * 18 16 15 20 20 C 1.37875 * 119.99622 * 186.34781 * 18 16 15 21 21 N 1.31524 * 120.00271 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99996 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47230 * 89.99912 * 22 20 18 24 24 H 1.48501 * 109.47172 * 210.00045 * 22 20 18 25 25 H 1.48498 * 109.47297 * 330.00357 * 22 20 18 26 26 C 1.47422 * 125.64989 * 185.31455 * 13 11 10 27 27 C 1.38587 * 118.55074 * 179.67718 * 10 9 8 28 28 H 1.09001 * 109.47255 * 270.02602 * 1 2 3 29 29 H 1.08996 * 109.46837 * 30.02078 * 1 2 3 30 30 H 1.08993 * 109.46890 * 150.01951 * 1 2 3 31 31 H 1.07999 * 119.71700 * 359.97438 * 3 2 1 32 32 H 1.08002 * 126.07550 * 359.97438 * 5 4 3 33 33 H 1.09003 * 109.88564 * 298.39337 * 14 13 11 34 34 H 1.08998 * 109.88565 * 59.56385 * 14 13 11 35 35 H 1.09005 * 110.85441 * 219.67478 * 15 14 13 36 36 H 1.09001 * 110.66936 * 96.52095 * 15 14 13 37 37 H 0.96693 * 113.99609 * 173.64570 * 17 16 15 38 38 H 0.96994 * 119.99866 * 180.02562 * 21 20 18 39 39 H 1.08998 * 110.36635 * 322.93021 * 26 13 11 40 40 H 1.09007 * 110.36593 * 85.13833 * 26 13 11 41 41 H 1.07997 * 119.31551 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1914 0.0000 4 6 3.5671 1.2370 0.0005 5 6 4.5119 2.2486 0.0011 6 7 5.7233 1.6785 0.0009 7 1 6.5652 2.1604 0.0015 8 7 5.5956 0.2846 0.0049 9 6 4.3186 -0.0286 -0.0001 10 6 3.5586 -1.2829 0.0000 11 6 4.2509 -2.5815 -0.0007 12 8 5.2080 -2.7610 0.7284 13 7 3.8246 -3.5721 -0.8092 14 6 2.7535 -3.4601 -1.8100 15 6 2.6360 -4.8302 -2.5105 16 6 4.0232 -5.4752 -2.2516 17 8 4.9866 -5.0173 -3.2027 18 6 3.9300 -6.9793 -2.2621 19 1 3.0030 -7.4610 -2.5361 20 6 5.0281 -7.7404 -1.9218 21 7 6.1571 -7.1538 -1.5885 22 14 4.9124 -9.6048 -1.9340 23 1 5.2858 -10.1151 -3.2776 24 1 5.8382 -10.1649 -0.9169 25 1 3.5213 -10.0165 -1.6173 26 6 4.3509 -4.9490 -0.8321 27 6 2.1742 -1.2185 0.0003 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.5938 2.1115 -0.0004 32 1 4.3080 3.3092 0.0009 33 1 1.8125 -3.2105 -1.3196 34 1 3.0079 -2.6927 -2.5410 35 1 2.4620 -4.7059 -3.5794 36 1 1.8432 -5.4265 -2.0589 37 1 5.8886 -5.3161 -3.0239 38 1 6.9297 -7.6893 -1.3495 39 1 5.4284 -4.9461 -0.6679 40 1 3.8544 -5.5575 -0.0761 41 1 1.6022 -2.1346 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:12 Heat of formation + Delta-G solvation = -12.041689 kcal Electronic energy + Delta-G solvation = -26288.154068 eV Core-core repulsion = 22554.483316 eV Total energy + Delta-G solvation = -3733.670752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24714 -40.96786 -38.94512 -38.25769 -36.06422 -34.25143 -33.55103 -32.32073 -31.77019 -30.98494 -29.50469 -27.39854 -27.07059 -25.58303 -24.05754 -22.50893 -21.94299 -21.48195 -19.95213 -19.22091 -19.06222 -18.22692 -17.62675 -17.18489 -16.59749 -16.50588 -16.12843 -15.85066 -15.60437 -15.39720 -14.92362 -14.69020 -14.53958 -14.16550 -14.16179 -13.74990 -13.53268 -13.28306 -12.99719 -12.85881 -12.78949 -12.58719 -12.42599 -12.33876 -12.23673 -12.19072 -12.00883 -11.57769 -11.21935 -11.19958 -10.85870 -10.65964 -10.32096 -9.82947 -9.48926 -8.51681 -8.24523 -6.43223 -0.55749 0.82278 1.19228 1.42117 1.43167 1.53958 1.72526 1.90784 2.14581 2.38819 2.79231 3.00978 3.24475 3.51853 3.74458 3.77944 4.03388 4.10557 4.19344 4.25560 4.30904 4.45978 4.46979 4.55257 4.69649 4.73917 4.76666 5.03484 5.05351 5.06874 5.08519 5.21123 5.30903 5.36403 5.39214 5.42274 5.48618 5.68591 5.74311 5.95612 6.05842 6.28928 6.58414 6.62348 6.69524 7.16947 7.24418 7.33328 8.80779 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003668 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.275268 B = 7631.131313 C = 8413.749817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C 0.006 3.994 4 C -0.240 4.240 5 C 0.135 3.865 6 N -0.421 5.421 7 H 0.459 0.541 8 N -0.363 5.363 9 C 0.104 3.896 10 C -0.158 4.158 11 C 0.562 3.438 12 O -0.597 6.597 13 N -0.610 5.610 14 C 0.107 3.893 15 C -0.111 4.111 16 C 0.231 3.769 17 O -0.590 6.590 18 C -0.555 4.555 19 H 0.074 0.926 20 C 0.023 3.977 21 N -0.920 5.920 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.260 1.260 26 C 0.109 3.891 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.175 0.825 32 H 0.258 0.742 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.371 0.629 38 H 0.268 0.732 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 22.635 1.829 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.157 4.157 3 C -0.013 4.013 4 C -0.250 4.250 5 C -0.024 4.024 6 N -0.122 5.122 7 H 0.307 0.693 8 N -0.190 5.190 9 C -0.052 4.052 10 C -0.164 4.164 11 C 0.353 3.647 12 O -0.480 6.480 13 N -0.342 5.342 14 C -0.014 4.014 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.397 6.397 18 C -0.593 4.593 19 H 0.092 0.908 20 C -0.178 4.178 21 N -0.559 5.559 22 Si 0.793 3.207 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.184 1.184 26 C -0.014 4.014 27 C -0.033 4.033 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.192 0.808 32 H 0.274 0.726 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.219 0.781 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.713 22.350 2.036 25.316 hybrid contribution 1.393 -1.391 0.493 2.029 sum -10.320 20.959 2.529 23.499 Atomic orbital electron populations 1.20791 0.87915 1.04127 1.03074 1.19402 0.98185 0.91290 1.06777 1.20623 0.89919 0.99171 0.91626 1.20069 0.96280 0.90268 1.18420 1.23789 0.83075 1.00963 0.94550 1.46509 1.09939 1.04532 1.51173 0.69350 1.77683 1.18255 0.91179 1.31885 1.21805 0.90938 0.94556 0.97925 1.19643 0.93763 0.87948 1.15088 1.18427 0.82888 0.84121 0.79247 1.90721 1.30023 1.83067 1.44169 1.48726 1.37612 1.11145 1.36716 1.22290 0.90245 0.98645 0.90235 1.22658 0.96450 0.94325 1.01379 1.19913 0.86365 0.91720 0.82932 1.86098 1.21465 1.77764 1.54368 1.21817 0.98693 0.91426 1.47331 0.90769 1.25913 0.94820 1.03976 0.93074 1.69889 1.02541 1.37630 1.45804 0.85401 0.78452 0.79127 0.77735 1.19984 1.21375 1.18444 1.22818 0.97809 0.79830 1.00901 1.21440 0.90442 1.00126 0.91253 0.90715 0.89319 0.91263 0.80752 0.72617 0.88193 0.91975 0.89549 0.88438 0.78061 0.92307 0.94285 0.93487 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.93 71.24 0.71 -0.43 16 2 C -0.15 -2.96 5.82 -20.26 -0.12 -3.08 16 3 C 0.01 0.10 9.58 22.35 0.21 0.32 16 4 C -0.24 -5.33 6.34 -20.25 -0.13 -5.46 16 5 C 0.14 1.81 12.08 84.42 1.02 2.83 16 6 N -0.42 -8.60 7.18 -56.29 -0.40 -9.00 16 7 H 0.46 5.51 8.96 -213.39 -1.91 3.59 16 8 N -0.36 -13.41 12.67 -45.22 -0.57 -13.98 16 9 C 0.10 3.72 7.42 43.75 0.32 4.05 16 10 C -0.16 -6.02 5.57 -18.65 -0.10 -6.13 16 11 C 0.56 27.34 7.44 86.59 0.64 27.98 16 12 O -0.60 -34.95 17.25 -4.18 -0.07 -35.02 16 13 N -0.61 -28.41 3.33 -815.95 -2.71 -31.12 16 14 C 0.11 3.92 5.88 86.73 0.51 4.43 16 15 C -0.11 -4.38 6.13 31.79 0.19 -4.19 16 16 C 0.23 11.85 0.87 -10.15 -0.01 11.84 16 17 O -0.59 -32.63 13.16 -148.98 -1.96 -34.60 16 18 C -0.55 -29.83 8.27 25.60 0.21 -29.62 16 19 H 0.07 3.79 7.79 -2.91 -0.02 3.76 16 20 C 0.02 1.24 5.29 84.65 0.45 1.68 16 21 N -0.92 -53.14 10.69 21.45 0.23 -52.91 16 22 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 C 0.11 5.86 5.41 86.85 0.47 6.33 16 27 C -0.01 -0.29 7.99 22.52 0.18 -0.11 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.58 8.04 -2.39 -0.02 0.56 16 30 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 31 H 0.18 1.07 8.04 -2.91 -0.02 1.04 16 32 H 0.26 -0.31 8.06 -2.91 -0.02 -0.33 16 33 H 0.10 2.77 5.71 -2.39 -0.01 2.76 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 3.20 8.14 -2.38 -0.02 3.19 16 36 H 0.10 3.46 8.03 -2.39 -0.02 3.44 16 37 H 0.37 21.64 7.57 -74.06 -0.56 21.08 16 38 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.04 2.43 7.28 -2.39 -0.02 2.41 16 40 H 0.05 2.57 8.03 -2.38 -0.02 2.55 16 41 H 0.14 3.50 6.02 -2.91 -0.02 3.48 16 Total: -1.00 -89.16 343.46 -0.28 -89.44 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -1.38 Total: 31.63 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.57 Total: 10.45 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.46 Total: -107.02 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -2.03 Total: -69.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -89.16 -0.28 -89.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.395 kcal (2) G-P(sol) polarization free energy of solvation -89.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds