Wall clock time and date at job start Tue Mar 31 2020 10:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99410 * 2 1 4 4 H 1.48502 * 109.47216 * 269.99630 * 3 2 1 5 5 H 1.48501 * 109.47673 * 29.99861 * 3 2 1 6 6 H 1.48500 * 109.46888 * 150.00238 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21583 * 119.99947 * 0.02562 * 13 12 11 15 15 C 1.47644 * 119.99806 * 180.27896 * 13 12 11 16 16 C 1.39712 * 120.08229 * 359.45066 * 15 13 12 17 17 C 1.37712 * 119.92166 * 179.69759 * 16 15 13 18 18 C 1.39053 * 120.07835 * 0.60418 * 17 16 15 19 19 N 1.39827 * 119.92152 * 179.69948 * 18 17 16 20 20 C 1.37746 * 126.52254 * 130.00355 * 19 18 17 21 21 C 1.34398 * 106.90202 * 179.97438 * 20 19 18 22 22 N 1.34396 * 108.34994 * 359.97438 * 21 20 19 23 23 C 1.30997 * 109.36871 * 359.76731 * 22 21 20 24 24 O 1.35487 * 125.78972 * 180.25659 * 23 22 21 25 25 C 1.39052 * 120.15953 * 359.67210 * 18 17 16 26 26 C 1.37719 * 120.08071 * 0.02583 * 25 18 17 27 27 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47477 * 59.99650 * 9 7 2 29 29 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 30 30 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 31 31 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 32 32 H 1.08992 * 109.46941 * 60.00565 * 11 10 9 33 33 H 1.08997 * 109.47419 * 300.00101 * 11 10 9 34 34 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 35 35 H 1.08007 * 120.03946 * 359.97438 * 16 15 13 36 36 H 1.07995 * 119.96160 * 180.29597 * 17 16 15 37 37 H 1.08004 * 126.55114 * 359.97438 * 20 19 18 38 38 H 1.08001 * 125.82616 * 180.02562 * 21 20 19 39 39 H 0.96698 * 113.99956 * 270.14125 * 24 23 22 40 40 H 1.08001 * 119.96603 * 180.02562 * 25 18 17 41 41 H 1.07999 * 120.04230 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9834 -7.3712 0.0015 14 8 0.7881 -7.5934 0.0024 15 6 2.9430 -8.4933 0.0071 16 6 4.3169 -8.2399 -0.0002 17 6 5.2090 -9.2890 0.0114 18 6 4.7437 -10.5994 0.0176 19 7 5.6524 -11.6621 0.0230 20 6 5.6441 -12.7435 0.8761 21 6 6.6871 -13.5191 0.5341 22 7 7.3239 -12.9406 -0.4984 23 6 6.7107 -11.8282 -0.8188 24 8 7.0699 -10.9845 -1.8162 25 6 3.3770 -10.8555 0.0190 26 6 2.4791 -9.8113 0.0138 27 1 -0.4851 0.8399 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8906 31 1 2.8721 -3.6043 -0.8894 32 1 0.8537 -5.0451 -0.8886 33 1 0.8541 -5.0446 0.8913 34 1 3.3863 -5.9232 0.0002 35 1 4.6790 -7.2224 -0.0103 36 1 6.2711 -9.0938 0.0106 37 1 4.9349 -12.9322 1.6686 38 1 6.9654 -14.4491 1.0075 39 1 7.6906 -10.2950 -1.5437 40 1 3.0191 -11.8744 0.0242 41 1 1.4177 -10.0109 0.0153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593453496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:17 Heat of formation + Delta-G solvation = -14.710116 kcal Electronic energy + Delta-G solvation = -24090.118805 eV Core-core repulsion = 20356.332341 eV Total energy + Delta-G solvation = -3733.786463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.36376 -41.31161 -39.55764 -38.33167 -37.03054 -35.39906 -35.12512 -33.19674 -32.24090 -30.99068 -29.73449 -28.53609 -25.78251 -24.60633 -24.02239 -22.59307 -22.40035 -22.23881 -21.47176 -20.07256 -19.06954 -18.46480 -18.29845 -17.23891 -16.84843 -16.74472 -16.48442 -16.10997 -15.96040 -15.61193 -15.46597 -15.29666 -14.83519 -14.65087 -14.55152 -14.21645 -13.91598 -13.77865 -13.66484 -13.44804 -12.92123 -12.75589 -12.55916 -12.45167 -12.34583 -11.68090 -11.64347 -11.50590 -11.26938 -11.13912 -11.02516 -10.55146 -10.27119 -10.24883 -9.85340 -9.43793 -8.19288 -6.30636 -0.63146 0.13314 0.77492 1.29588 1.42303 1.43250 1.54111 1.65264 1.90840 2.05722 2.42479 2.60441 2.81724 3.14679 3.54277 3.59638 3.66898 3.78506 4.05510 4.08130 4.15816 4.20853 4.42539 4.43521 4.54451 4.55454 4.75629 4.82642 4.87476 4.93782 4.97471 5.11075 5.17265 5.19298 5.34535 5.43261 5.52435 5.55999 5.71007 5.83523 5.84587 6.22080 6.46337 6.64232 6.82722 6.87148 7.10610 7.39048 8.92650 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.001965 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.805276 B =14248.870175 C =15077.928106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.706 5.706 13 C 0.550 3.450 14 O -0.582 6.582 15 C -0.137 4.137 16 C -0.057 4.057 17 C -0.114 4.114 18 C 0.134 3.866 19 N -0.423 5.423 20 C -0.032 4.032 21 C -0.025 4.025 22 N -0.513 5.513 23 C 0.371 3.629 24 O -0.448 6.448 25 C -0.116 4.116 26 C -0.049 4.049 27 H 0.263 0.737 28 H -0.008 1.008 29 H -0.007 1.007 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.415 0.585 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.214 0.786 38 H 0.204 0.796 39 H 0.421 0.579 40 H 0.154 0.846 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.569 -25.703 2.642 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.358 5.358 13 C 0.338 3.662 14 O -0.463 6.463 15 C -0.140 4.140 16 C -0.076 4.076 17 C -0.133 4.133 18 C 0.042 3.958 19 N -0.117 5.117 20 C -0.160 4.160 21 C -0.170 4.170 22 N -0.243 5.243 23 C 0.073 3.927 24 O -0.252 6.252 25 C -0.135 4.135 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.231 0.769 38 H 0.221 0.779 39 H 0.281 0.719 40 H 0.172 0.828 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.923 -26.215 1.821 30.220 hybrid contribution -0.275 1.802 0.451 1.878 sum 14.648 -24.413 2.272 28.561 Atomic orbital electron populations 1.70107 1.07922 1.27755 1.51722 1.26024 0.95748 1.03564 0.94878 0.85423 0.78715 0.78350 0.78400 1.19918 1.21190 1.18340 1.21683 0.93795 0.91958 1.50331 0.91402 1.18956 0.94503 0.92995 0.95129 1.21610 0.98464 0.91587 1.02354 1.21302 0.91920 0.85298 1.01024 1.45885 1.11388 1.04851 1.73676 1.18644 0.88051 0.83587 0.75912 1.90778 1.18223 1.85399 1.51942 1.20016 0.93933 0.93354 1.06727 1.21437 0.90444 1.00910 0.94833 1.21113 1.01684 0.89619 1.00879 1.18063 0.88859 0.86924 1.01945 1.43667 1.23237 1.18632 1.26117 1.23349 1.04637 0.88876 0.99185 1.22741 0.95376 1.02680 0.96178 1.70566 1.29270 1.07523 1.16921 1.20721 0.88776 0.92844 0.90381 1.84882 1.66857 1.44606 1.28833 1.21143 0.90383 1.00846 1.01168 1.21221 1.01041 0.90452 0.94164 0.92867 0.98963 0.98891 0.91094 0.91135 0.92958 0.92847 0.74625 0.81886 0.82464 0.76890 0.77905 0.71863 0.82809 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.44 0.28 -56.04 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.10 -3.70 5.27 30.60 0.16 -3.53 16 11 C 0.13 4.26 5.67 86.38 0.49 4.75 16 12 N -0.71 -17.74 5.51 -466.16 -2.57 -20.30 16 13 C 0.55 14.99 7.77 86.73 0.67 15.66 16 14 O -0.58 -21.07 16.34 -3.98 -0.06 -21.14 16 15 C -0.14 -2.65 5.88 -20.08 -0.12 -2.77 16 16 C -0.06 -0.73 9.53 22.50 0.21 -0.51 16 17 C -0.11 -1.26 9.38 22.34 0.21 -1.05 16 18 C 0.13 1.83 5.98 38.26 0.23 2.06 16 19 N -0.42 -6.06 2.89 -461.42 -1.33 -7.40 16 20 C -0.03 -0.35 11.30 82.89 0.94 0.58 16 21 C -0.02 -0.34 11.84 83.42 0.99 0.65 16 22 N -0.51 -10.23 11.27 -313.83 -3.54 -13.77 16 23 C 0.37 6.52 8.85 179.73 1.59 8.11 16 24 O -0.45 -6.48 13.24 -87.87 -1.16 -7.64 16 25 C -0.12 -1.61 9.67 22.34 0.22 -1.39 16 26 C -0.05 -0.88 9.58 22.51 0.22 -0.66 16 27 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.42 7.28 6.49 -92.71 -0.60 6.67 16 35 H 0.16 1.24 6.39 -2.91 -0.02 1.22 16 36 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.42 1.59 9.06 -74.06 -0.67 0.92 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.14 2.67 7.64 -2.91 -0.02 2.65 16 Total: -1.00 -78.91 360.38 0.10 -78.81 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -0.20 Total: 8.21 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.65 Total: -5.74 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -7.15 Total: -97.51 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.23 Total: -28.77 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -78.91 0.10 -78.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593453496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.102 kcal (2) G-P(sol) polarization free energy of solvation -78.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds