Wall clock time and date at job start Tue Mar 31 2020 10:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47386 * 270.00048 * 3 2 1 5 5 H 1.48503 * 109.47250 * 30.00496 * 3 2 1 6 6 H 1.48500 * 109.46830 * 150.00502 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46986 * 179.97438 * 20 18 10 22 22 C 1.50699 * 109.46986 * 179.97438 * 21 20 18 23 23 C 1.41381 * 126.80319 * 124.71102 * 22 21 20 24 24 C 1.35444 * 103.98999 * 179.88755 * 23 22 21 25 25 O 1.34042 * 106.44362 * 0.36883 * 24 23 22 26 26 N 1.20917 * 111.56814 * 359.74937 * 25 24 23 27 27 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 29 29 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 30 30 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 31 31 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 32 32 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 33 33 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 34 34 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 37 37 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 38 38 H 1.08999 * 109.47464 * 299.99792 * 21 20 18 39 39 H 1.09001 * 109.47410 * 60.00166 * 21 20 18 40 40 H 1.08007 * 128.00381 * 0.02815 * 23 22 21 41 41 H 1.07996 * 126.78476 * 180.09734 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 2.7973 -4.3045 -3.6385 22 6 2.3067 -3.7315 -4.9431 23 6 3.1007 -3.2276 -5.9988 24 6 2.1980 -2.8396 -6.9310 25 8 0.9873 -3.1037 -6.4199 26 7 1.0676 -3.5971 -5.3189 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.6869 -3.3895 2.0258 31 1 3.6886 -4.5604 1.1348 32 1 0.4412 -4.0092 2.8172 33 1 -1.0179 -5.9028 3.4992 34 1 -0.4700 -8.1797 2.7366 35 1 2.8620 -6.8029 0.6805 36 1 1.0671 -3.6528 -2.5325 37 1 2.4196 -2.4955 -2.5320 38 1 3.8809 -4.2017 -3.5809 39 1 2.5289 -5.3595 -3.5817 40 1 4.1779 -3.1682 -6.0509 41 1 2.4112 -2.3997 -7.8940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596965128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:53 Heat of formation + Delta-G solvation = 53.446046 kcal Electronic energy + Delta-G solvation = -25651.288802 eV Core-core repulsion = 21920.457812 eV Total energy + Delta-G solvation = -3730.830991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.79926 -40.06815 -38.99651 -35.51280 -34.93177 -33.11182 -32.17305 -31.94970 -31.41540 -30.70093 -27.59365 -26.52410 -24.51086 -23.40087 -23.02229 -22.81424 -21.82282 -20.52785 -18.36207 -17.71056 -17.37688 -16.96792 -16.65816 -16.34099 -15.77724 -15.49243 -15.25219 -14.89356 -14.58677 -14.37361 -13.74048 -13.46381 -13.23070 -13.08538 -12.79875 -12.63847 -12.39045 -12.19306 -11.91437 -11.82883 -11.41500 -11.38258 -11.24334 -10.94710 -10.86071 -10.61110 -10.25449 -9.88698 -9.87938 -9.58292 -9.52895 -9.26802 -9.16799 -8.74455 -8.59181 -7.84623 -6.24551 -4.32750 1.31567 1.52803 1.61624 2.36900 3.17815 3.25263 3.26733 3.33536 3.37623 3.76902 4.18638 4.27229 4.37155 4.67193 4.68357 5.03497 5.08515 5.17479 5.21846 5.23091 5.32052 5.33400 5.37920 5.50034 5.59727 5.65571 5.80027 5.90031 5.97248 6.09705 6.15689 6.17438 6.33928 6.35486 6.46695 6.58113 6.67639 6.95292 7.12027 7.42079 7.69283 7.97871 8.19134 8.22269 8.42402 8.71396 8.91289 9.35627 10.82124 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.005082 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.208555 B = 5508.611970 C = 8066.323322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.590 5.590 11 C 0.161 3.839 12 C -0.145 4.145 13 C -0.059 4.059 14 C -0.179 4.179 15 C 0.088 3.912 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.521 3.479 19 O -0.574 6.574 20 C -0.129 4.129 21 C -0.025 4.025 22 C 0.023 3.977 23 C -0.231 4.231 24 C -0.068 4.068 25 O 0.097 5.903 26 N -0.360 5.360 27 H 0.266 0.734 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.170 0.830 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -6.581 -4.630 8.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.320 5.320 11 C 0.037 3.963 12 C -0.148 4.148 13 C -0.086 4.086 14 C -0.199 4.199 15 C -0.069 4.069 16 N -0.201 5.201 17 C -0.041 4.041 18 C 0.310 3.690 19 O -0.456 6.456 20 C -0.169 4.169 21 C -0.063 4.063 22 C -0.136 4.136 23 C -0.252 4.252 24 C -0.149 4.149 25 O 0.031 5.969 26 N -0.064 5.064 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.188 0.812 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.096 -8.043 -4.318 9.366 hybrid contribution 0.899 2.274 0.058 2.446 sum 2.995 -5.769 -4.260 7.772 Atomic orbital electron populations 1.69922 1.06012 1.27392 1.49326 1.24942 0.94840 0.99296 0.94650 0.86525 0.79849 0.82956 0.78339 1.20481 1.21029 1.19740 1.21467 0.93604 0.90376 1.52473 0.91989 1.19466 0.87482 0.82472 0.98776 1.48240 1.45540 1.34477 1.03717 1.20126 0.95939 0.93194 0.87091 1.21447 0.98062 0.96881 0.98444 1.21641 0.92675 0.99776 0.94470 1.22103 1.01176 0.94073 1.02501 1.22699 0.94074 0.96074 0.94042 1.67712 1.04728 1.36208 1.11443 1.22848 0.97654 0.88057 0.95542 1.20429 0.80569 0.82148 0.85835 1.90574 1.36447 1.30507 1.88043 1.21541 1.02200 1.02216 0.90942 1.19768 1.00917 0.99479 0.86152 1.23772 0.88753 1.01667 0.99367 1.22769 1.02152 1.06123 0.94157 1.25968 0.84042 1.03311 1.01629 1.84849 1.30568 1.58054 1.23454 1.73863 1.21390 1.14702 0.96399 0.92448 0.94304 0.94691 0.89232 0.89655 0.84542 0.85093 0.83306 0.82405 0.88877 0.87671 0.89111 0.89601 0.81239 0.77011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.53 9.28 -34.44 -0.32 -13.85 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.45 4.97 -5.19 -0.03 5.42 16 10 N -0.59 -11.86 2.44 -176.43 -0.43 -12.29 16 11 C 0.16 2.82 5.56 -5.19 -0.03 2.79 16 12 C -0.15 -2.41 5.48 -104.48 -0.57 -2.99 16 13 C -0.06 -0.90 9.86 -39.28 -0.39 -1.29 16 14 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 15 C 0.09 1.23 11.18 -17.54 -0.20 1.04 16 16 N -0.49 -8.16 10.36 -13.25 -0.14 -8.30 16 17 C 0.12 1.97 10.86 -17.55 -0.19 1.78 16 18 C 0.52 10.36 7.67 -10.99 -0.08 10.28 16 19 O -0.57 -11.80 15.12 5.55 0.08 -11.72 16 20 C -0.13 -2.37 4.22 -27.89 -0.12 -2.49 16 21 C -0.02 -0.39 5.10 -27.89 -0.14 -0.53 16 22 C 0.02 0.36 6.59 -82.10 -0.54 -0.19 16 23 C -0.23 -2.72 11.12 -39.38 -0.44 -3.16 16 24 C -0.07 -0.70 12.30 29.74 0.37 -0.33 16 25 O 0.10 1.36 11.20 17.17 0.19 1.55 16 26 N -0.36 -5.96 12.06 33.42 0.40 -5.56 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.04 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 30 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 31 H 0.09 1.46 7.37 -51.93 -0.38 1.08 16 32 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.16 2.70 7.62 -52.49 -0.40 2.30 16 36 H 0.09 1.80 7.40 -51.93 -0.38 1.42 16 37 H 0.11 2.07 8.00 -51.93 -0.42 1.65 16 38 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 39 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 40 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.46 360.62 -7.17 -37.63 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.25 Total: 6.22 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.17 Total: -4.71 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.57 Total: -49.48 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.28 Total: -10.17 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.46 -7.17 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596965128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.074 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds