Wall clock time and date at job start Tue Mar 31 2020 10:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47386 * 270.00048 * 3 2 1 5 5 H 1.48503 * 109.47250 * 30.00496 * 3 2 1 6 6 H 1.48500 * 109.46830 * 150.00502 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46986 * 179.97438 * 20 18 10 22 22 C 1.50699 * 109.46986 * 179.97438 * 21 20 18 23 23 C 1.41381 * 126.80319 * 124.71102 * 22 21 20 24 24 C 1.35444 * 103.98999 * 179.88755 * 23 22 21 25 25 O 1.34042 * 106.44362 * 0.36883 * 24 23 22 26 26 N 1.20917 * 111.56814 * 359.74937 * 25 24 23 27 27 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 29 29 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 30 30 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 31 31 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 32 32 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 33 33 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 34 34 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 37 37 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 38 38 H 1.08999 * 109.47464 * 299.99792 * 21 20 18 39 39 H 1.09001 * 109.47410 * 60.00166 * 21 20 18 40 40 H 1.08007 * 128.00381 * 0.02815 * 23 22 21 41 41 H 1.07996 * 126.78476 * 180.09734 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 2.7973 -4.3045 -3.6385 22 6 2.3067 -3.7315 -4.9431 23 6 3.1007 -3.2276 -5.9988 24 6 2.1980 -2.8396 -6.9310 25 8 0.9873 -3.1037 -6.4199 26 7 1.0676 -3.5971 -5.3189 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.6869 -3.3895 2.0258 31 1 3.6886 -4.5604 1.1348 32 1 0.4412 -4.0092 2.8172 33 1 -1.0179 -5.9028 3.4992 34 1 -0.4700 -8.1797 2.7366 35 1 2.8620 -6.8029 0.6805 36 1 1.0671 -3.6528 -2.5325 37 1 2.4196 -2.4955 -2.5320 38 1 3.8809 -4.2017 -3.5809 39 1 2.5289 -5.3595 -3.5817 40 1 4.1779 -3.1682 -6.0509 41 1 2.4112 -2.3997 -7.8940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596965128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:53 Heat of formation + Delta-G solvation = 36.404880 kcal Electronic energy + Delta-G solvation = -25652.027762 eV Core-core repulsion = 21920.457812 eV Total energy + Delta-G solvation = -3731.569951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.86550 -41.40852 -40.48302 -37.04890 -36.24483 -34.84993 -33.65287 -33.06108 -32.60815 -31.95618 -29.36543 -27.98643 -25.92220 -24.92273 -24.34987 -24.03576 -23.07263 -21.62214 -19.95857 -18.81467 -18.72036 -18.46878 -18.03359 -17.78831 -17.20013 -17.00167 -16.76042 -16.28519 -16.06564 -15.61476 -15.03439 -14.76226 -14.49064 -14.30282 -14.22849 -13.99642 -13.91555 -13.57309 -13.44171 -13.26161 -13.09666 -12.83717 -12.66338 -12.56532 -12.46058 -12.10300 -11.92703 -11.74158 -11.05062 -10.88204 -10.70645 -10.60884 -10.50664 -10.46125 -9.97378 -9.52700 -8.22505 -6.37434 0.10949 0.31322 0.69449 1.32454 1.40091 1.42307 1.51454 1.69461 2.25267 2.41829 2.55976 2.92952 3.08311 3.25576 3.51928 3.57755 3.79601 3.88068 3.94992 4.06414 4.09203 4.12010 4.21598 4.32541 4.45322 4.55149 4.66994 4.67490 4.73788 4.75132 4.83508 4.86316 4.98481 5.06817 5.14568 5.21645 5.22321 5.34756 5.61713 5.75683 5.77877 6.02173 6.49297 6.77049 6.99074 7.23613 7.36925 7.43385 8.83236 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.005082 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.208555 B = 5508.611970 C = 8066.323322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.256 3.744 10 N -0.592 5.592 11 C 0.162 3.838 12 C -0.157 4.157 13 C -0.070 4.070 14 C -0.168 4.168 15 C 0.088 3.912 16 N -0.512 5.512 17 C 0.104 3.896 18 C 0.517 3.483 19 O -0.580 6.580 20 C -0.118 4.118 21 C -0.015 4.015 22 C -0.001 4.001 23 C -0.240 4.240 24 C -0.046 4.046 25 O 0.089 5.911 26 N -0.402 5.402 27 H 0.267 0.733 28 H 0.019 0.981 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.148 0.852 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.198 0.802 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -6.266 -5.079 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.322 5.322 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.096 4.096 14 C -0.187 4.187 15 C -0.069 4.069 16 N -0.221 5.221 17 C -0.053 4.053 18 C 0.307 3.693 19 O -0.462 6.462 20 C -0.159 4.159 21 C -0.053 4.053 22 C -0.159 4.159 23 C -0.261 4.261 24 C -0.127 4.127 25 O 0.022 5.978 26 N -0.108 5.108 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.203 0.797 35 H 0.165 0.835 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.215 0.785 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 2.499 -7.745 -4.759 9.428 hybrid contribution 0.740 2.122 0.190 2.255 sum 3.240 -5.623 -4.570 7.937 Atomic orbital electron populations 1.70021 1.07312 1.28174 1.50355 1.25657 0.95520 1.02350 0.94338 0.85583 0.78778 0.79194 0.78331 1.20197 1.20700 1.19165 1.21658 0.93434 0.91331 1.51940 0.92451 1.19058 0.87423 0.82827 0.97191 1.48207 1.45118 1.33969 1.04880 1.20187 0.96317 0.93633 0.86019 1.21301 0.98757 0.96302 0.99628 1.21818 0.92661 1.00699 0.94454 1.22475 1.01402 0.93144 1.01727 1.23349 0.93326 0.97559 0.92643 1.67719 1.05722 1.36242 1.12450 1.22707 0.97995 0.88416 0.96185 1.20666 0.80429 0.82043 0.86194 1.90561 1.36759 1.30727 1.88183 1.21417 1.01339 1.01585 0.91512 1.19629 1.01233 0.98667 0.85763 1.23898 0.89401 1.02651 0.99915 1.23141 1.03647 1.06066 0.93234 1.26942 0.82072 1.00967 1.02680 1.84787 1.32384 1.57828 1.22752 1.73864 1.22519 1.16501 0.97868 0.92374 0.96312 0.95706 0.88989 0.89530 0.84301 0.81565 0.79680 0.83500 0.90474 0.89150 0.87986 0.90289 0.78519 0.71798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.35 13.29 21.45 0.28 -50.06 16 2 C 0.02 1.13 5.46 84.65 0.46 1.59 16 3 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -27.68 9.28 25.60 0.24 -27.44 16 8 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.26 12.10 4.97 85.63 0.43 12.53 16 10 N -0.59 -24.54 2.44 -830.48 -2.03 -26.56 16 11 C 0.16 5.82 5.56 85.63 0.48 6.30 16 12 C -0.16 -5.28 5.48 -19.77 -0.11 -5.38 16 13 C -0.07 -2.10 9.86 22.47 0.22 -1.87 16 14 C -0.17 -4.15 10.11 22.36 0.23 -3.93 16 15 C 0.09 2.28 11.18 84.69 0.95 3.23 16 16 N -0.51 -16.65 10.36 -195.83 -2.03 -18.68 16 17 C 0.10 3.56 10.86 84.67 0.92 4.48 16 18 C 0.52 21.23 7.67 87.66 0.67 21.90 16 19 O -0.58 -24.38 15.12 -3.04 -0.05 -24.43 16 20 C -0.12 -4.55 4.22 29.85 0.13 -4.42 16 21 C -0.01 -0.47 5.10 29.85 0.15 -0.32 16 22 C 0.00 -0.03 6.59 43.58 0.29 0.26 16 23 C -0.24 -5.19 11.12 22.40 0.25 -4.95 16 24 C -0.05 -0.82 12.30 67.17 0.83 0.01 16 25 O 0.09 2.40 11.20 71.62 0.80 3.21 16 26 N -0.40 -13.54 12.06 -49.56 -0.60 -14.14 16 27 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.02 0.97 6.44 -2.39 -0.02 0.95 16 29 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 30 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 31 H 0.09 3.06 7.37 -2.39 -0.02 3.04 16 32 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.15 5.24 7.62 -2.91 -0.02 5.22 16 36 H 0.08 3.19 7.40 -2.39 -0.02 3.17 16 37 H 0.09 3.72 8.00 -2.39 -0.02 3.70 16 38 H 0.10 3.00 8.09 -2.39 -0.02 2.98 16 39 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 40 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.27 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -67.07 360.62 5.58 -61.49 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.04 Total: 24.12 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.12 Total: 1.99 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.37 Total: -109.45 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.76 Total: -21.22 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -67.07 5.58 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596965128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.896 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds