Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35909 * 117.00169 * 2 1 4 4 C 1.38850 * 119.99001 * 359.97438 * 3 2 1 5 5 C 1.38230 * 120.22296 * 179.97438 * 4 3 2 6 6 C 1.38028 * 120.19602 * 0.02562 * 5 4 3 7 7 C 1.39482 * 119.97483 * 359.97438 * 6 5 4 8 8 C 1.48122 * 120.10773 * 179.97438 * 7 6 5 9 9 O 1.21867 * 120.00151 * 173.78677 * 8 7 6 10 10 N 1.33710 * 120.00145 * 354.06271 * 8 7 6 11 11 C 1.33050 * 119.99899 * 179.72421 * 10 8 7 12 12 C 1.41099 * 126.37337 * 0.02562 * 11 10 8 13 13 C 1.35067 * 108.24037 * 179.97438 * 12 11 10 14 14 N 1.36389 * 108.93032 * 359.97438 * 13 12 11 15 15 C 1.46494 * 125.85468 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47072 * 85.02958 * 15 14 13 17 17 H 1.08002 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00191 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99604 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99995 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47138 * 119.99693 * 20 18 16 23 23 H 1.48500 * 109.46803 * 239.99845 * 20 18 16 24 24 N 1.37399 * 126.37158 * 179.70926 * 11 10 8 25 25 H 0.96998 * 126.35830 * 0.02562 * 24 11 10 26 26 C 1.38471 * 119.99464 * 180.22787 * 3 2 1 27 27 C 1.50703 * 120.09404 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47697 * 300.00409 * 1 2 3 30 30 H 1.09011 * 109.47200 * 60.00357 * 1 2 3 31 31 H 1.08004 * 119.88661 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.90304 * 179.97438 * 5 4 3 33 33 H 1.07993 * 120.01340 * 180.02562 * 6 5 4 34 34 H 1.08000 * 125.88534 * 359.97438 * 12 11 10 35 35 H 1.07996 * 125.53374 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47314 * 205.02367 * 15 14 13 37 37 H 1.09002 * 109.47469 * 325.03171 * 15 14 13 38 38 H 0.97000 * 119.99698 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47222 * 263.64795 * 27 26 3 40 40 H 1.09002 * 109.47422 * 23.65069 * 27 26 3 41 41 H 1.09004 * 109.46804 * 143.65003 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 -0.0005 5 6 1.9121 3.6095 0.0000 6 6 3.2900 3.6920 0.0005 7 6 4.0578 2.5276 0.0011 8 6 5.5366 2.6127 0.0011 9 8 6.2052 1.6003 0.1158 10 7 6.1379 3.8009 -0.1192 11 6 7.4661 3.8779 -0.1137 12 6 8.3664 2.7984 0.0100 13 6 9.6238 3.2900 -0.0297 14 7 9.5649 4.6448 -0.1749 15 6 10.7140 5.5495 -0.2593 16 6 11.1993 5.6136 -1.6846 17 1 10.7017 5.0377 -2.4509 18 6 12.2791 6.4067 -2.0103 19 7 12.8853 7.1077 -1.0771 20 14 12.8801 6.4867 -3.7772 21 1 12.0336 5.6120 -4.6280 22 1 12.7947 7.8862 -4.2662 23 1 14.2899 6.0248 -3.8418 24 7 8.2165 5.0226 -0.2335 25 1 7.8762 5.9250 -0.3374 26 6 3.4288 1.2832 -0.0048 27 6 4.2515 0.0206 -0.0105 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2111 2.3165 -0.0014 32 1 1.3188 4.5118 -0.0008 33 1 3.7733 4.6577 0.0014 34 1 8.0966 1.7583 0.1179 35 1 10.5289 2.7051 0.0419 36 1 10.4170 6.5457 0.0684 37 1 11.5151 5.1801 0.3809 38 1 13.6447 7.6659 -1.3063 39 1 4.5487 -0.2241 1.0092 40 1 3.6597 -0.7968 -0.4225 41 1 5.1411 0.1695 -0.6225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597260822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = 57.445541 kcal Electronic energy + Delta-G solvation = -24835.947934 eV Core-core repulsion = 21105.290374 eV Total energy + Delta-G solvation = -3730.657559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90607 -40.23937 -38.61411 -36.85540 -34.35314 -33.17226 -32.33058 -31.12746 -31.02930 -29.96686 -27.62048 -26.99801 -26.40745 -23.87842 -22.79739 -21.76449 -21.35893 -20.98499 -19.40475 -17.70331 -17.06327 -16.72604 -16.32517 -15.84244 -15.52104 -15.23525 -15.20270 -14.87992 -14.74161 -14.26802 -13.96818 -13.63847 -13.33550 -12.97592 -12.93325 -12.83201 -12.50525 -12.26431 -12.04396 -11.92706 -11.82050 -11.38196 -11.34493 -11.10844 -11.05777 -10.82306 -10.56857 -10.41429 -9.61187 -9.37203 -9.08754 -8.96082 -8.68158 -8.28088 -8.00268 -7.00689 -6.53792 -4.69664 0.99785 1.56747 1.78498 2.01526 2.99386 3.02511 3.12310 3.17165 3.21560 3.76540 4.02295 4.19359 4.65450 4.72915 4.77970 4.79244 4.98007 5.00103 5.03119 5.19862 5.27430 5.38948 5.48170 5.51523 5.77434 5.91894 5.94202 6.07386 6.18054 6.27716 6.41531 6.44925 6.50423 6.59572 6.61976 6.72604 6.80599 6.92593 7.33878 7.41060 7.42538 7.47206 7.57551 7.90268 8.23634 8.39814 9.01341 9.29324 10.48806 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.002350 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.153679 B =11913.969221 C =12116.820096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.103 3.897 4 C -0.191 4.191 5 C -0.110 4.110 6 C -0.094 4.094 7 C -0.066 4.066 8 C 0.533 3.467 9 O -0.570 6.570 10 N -0.693 5.693 11 C 0.470 3.530 12 C -0.332 4.332 13 C 0.163 3.837 14 N -0.339 5.339 15 C 0.253 3.747 16 C -0.559 4.559 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.886 5.886 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.278 1.278 24 N -0.466 5.466 25 H 0.446 0.554 26 C -0.066 4.066 27 C -0.106 4.106 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.272 0.728 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 -7.267 3.087 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.059 3.941 4 C -0.210 4.210 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.069 4.069 8 C 0.320 3.680 9 O -0.453 6.453 10 N -0.456 5.456 11 C 0.220 3.780 12 C -0.364 4.364 13 C 0.017 3.983 14 N -0.124 5.124 15 C 0.137 3.863 16 C -0.597 4.597 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.204 1.204 24 N -0.187 5.187 25 H 0.293 0.707 26 C -0.068 4.068 27 C -0.162 4.162 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.202 0.798 35 H 0.206 0.794 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.299 -6.853 3.082 17.947 hybrid contribution 0.219 0.411 -0.927 1.038 sum -16.080 -6.441 2.155 17.456 Atomic orbital electron populations 1.23000 0.78988 1.03588 1.01092 1.86065 1.20743 1.26836 1.89214 1.18643 0.91590 0.84140 0.99765 1.21268 0.99608 0.92501 1.07643 1.20885 0.94745 0.96727 1.00429 1.21394 0.92835 0.99017 0.98025 1.19514 0.93666 0.92067 1.01656 1.18724 0.87941 0.84650 0.76677 1.90555 1.65653 1.39848 1.49228 1.68745 1.04212 1.28913 1.43764 1.19128 0.90106 0.83802 0.84953 1.22480 0.90444 1.02106 1.21398 1.22891 1.00624 0.82197 0.92562 1.48089 0.95186 1.07120 1.61978 1.20106 0.78171 0.88515 0.99556 1.21440 1.15784 1.29556 0.92881 0.91127 1.24963 0.95599 0.94254 0.98729 1.69905 1.21630 1.27469 1.33244 0.86232 0.78850 0.78311 0.82976 1.19365 1.20492 1.20370 1.44592 0.96004 1.09216 1.68935 0.70719 1.19403 0.90307 0.96034 1.01032 1.20848 0.99681 0.92546 1.03161 0.88504 0.92897 0.92910 0.85802 0.85811 0.84249 0.79827 0.79417 0.92974 0.91255 0.91851 0.91406 0.92813 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.98 9.43 -19.45 -0.18 -4.16 16 3 C 0.10 1.46 6.65 -39.27 -0.26 1.20 16 4 C -0.19 -2.31 9.03 -39.36 -0.36 -2.66 16 5 C -0.11 -1.35 10.03 -39.66 -0.40 -1.75 16 6 C -0.09 -1.40 9.58 -39.20 -0.38 -1.78 16 7 C -0.07 -1.14 5.87 -104.93 -0.62 -1.76 16 8 C 0.53 10.46 7.61 -12.68 -0.10 10.36 16 9 O -0.57 -11.69 10.27 5.04 0.05 -11.64 16 10 N -0.69 -13.42 9.68 -12.18 -0.12 -13.54 16 11 C 0.47 8.86 8.07 -155.25 -1.25 7.61 16 12 C -0.33 -5.97 9.52 -39.62 -0.38 -6.35 16 13 C 0.16 2.66 11.45 -16.65 -0.19 2.47 16 14 N -0.34 -6.09 3.63 -62.24 -0.23 -6.32 16 15 C 0.25 5.13 6.19 -5.19 -0.03 5.10 16 16 C -0.56 -13.04 9.39 -34.44 -0.32 -13.36 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -22.20 13.29 55.43 0.74 -21.46 16 20 Si 0.91 19.06 29.54 -169.99 -5.02 14.04 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 N -0.47 -8.06 7.38 31.33 0.23 -7.83 16 25 H 0.45 6.77 8.96 -182.55 -1.64 5.13 16 26 C -0.07 -1.08 5.93 -104.09 -0.62 -1.69 16 27 C -0.11 -1.68 8.57 36.01 0.31 -1.37 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.36 7.66 -51.92 -0.40 -0.04 16 31 H 0.12 1.12 6.28 -52.48 -0.33 0.79 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 2.04 7.56 -52.49 -0.40 1.65 16 34 H 0.18 3.42 5.77 -52.49 -0.30 3.12 16 35 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.77 7.34 -51.93 -0.38 0.38 16 41 H 0.09 1.66 5.86 -51.93 -0.30 1.36 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -28.85 349.61 -9.18 -38.03 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.23 Total: 8.82 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.69 Total: -1.20 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.62 Total: -49.16 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.13 Total: -15.80 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.85 -9.18 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597260822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds