Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35909 * 117.00169 * 2 1 4 4 C 1.38850 * 119.99001 * 359.97438 * 3 2 1 5 5 C 1.38230 * 120.22296 * 179.97438 * 4 3 2 6 6 C 1.38028 * 120.19602 * 0.02562 * 5 4 3 7 7 C 1.39482 * 119.97483 * 359.97438 * 6 5 4 8 8 C 1.48122 * 120.10773 * 179.97438 * 7 6 5 9 9 O 1.21867 * 120.00151 * 173.78677 * 8 7 6 10 10 N 1.33710 * 120.00145 * 354.06271 * 8 7 6 11 11 C 1.33050 * 119.99899 * 179.72421 * 10 8 7 12 12 C 1.41099 * 126.37337 * 0.02562 * 11 10 8 13 13 C 1.35067 * 108.24037 * 179.97438 * 12 11 10 14 14 N 1.36389 * 108.93032 * 359.97438 * 13 12 11 15 15 C 1.46494 * 125.85468 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47072 * 85.02958 * 15 14 13 17 17 H 1.08002 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00191 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99604 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99995 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47138 * 119.99693 * 20 18 16 23 23 H 1.48500 * 109.46803 * 239.99845 * 20 18 16 24 24 N 1.37399 * 126.37158 * 179.70926 * 11 10 8 25 25 H 0.96998 * 126.35830 * 0.02562 * 24 11 10 26 26 C 1.38471 * 119.99464 * 180.22787 * 3 2 1 27 27 C 1.50703 * 120.09404 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47697 * 300.00409 * 1 2 3 30 30 H 1.09011 * 109.47200 * 60.00357 * 1 2 3 31 31 H 1.08004 * 119.88661 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.90304 * 179.97438 * 5 4 3 33 33 H 1.07993 * 120.01340 * 180.02562 * 6 5 4 34 34 H 1.08000 * 125.88534 * 359.97438 * 12 11 10 35 35 H 1.07996 * 125.53374 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47314 * 205.02367 * 15 14 13 37 37 H 1.09002 * 109.47469 * 325.03171 * 15 14 13 38 38 H 0.97000 * 119.99698 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47222 * 263.64795 * 27 26 3 40 40 H 1.09002 * 109.47422 * 23.65069 * 27 26 3 41 41 H 1.09004 * 109.46804 * 143.65003 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 -0.0005 5 6 1.9121 3.6095 0.0000 6 6 3.2900 3.6920 0.0005 7 6 4.0578 2.5276 0.0011 8 6 5.5366 2.6127 0.0011 9 8 6.2052 1.6003 0.1158 10 7 6.1379 3.8009 -0.1192 11 6 7.4661 3.8779 -0.1137 12 6 8.3664 2.7984 0.0100 13 6 9.6238 3.2900 -0.0297 14 7 9.5649 4.6448 -0.1749 15 6 10.7140 5.5495 -0.2593 16 6 11.1993 5.6136 -1.6846 17 1 10.7017 5.0377 -2.4509 18 6 12.2791 6.4067 -2.0103 19 7 12.8853 7.1077 -1.0771 20 14 12.8801 6.4867 -3.7772 21 1 12.0336 5.6120 -4.6280 22 1 12.7947 7.8862 -4.2662 23 1 14.2899 6.0248 -3.8418 24 7 8.2165 5.0226 -0.2335 25 1 7.8762 5.9250 -0.3374 26 6 3.4288 1.2832 -0.0048 27 6 4.2515 0.0206 -0.0105 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2111 2.3165 -0.0014 32 1 1.3188 4.5118 -0.0008 33 1 3.7733 4.6577 0.0014 34 1 8.0966 1.7583 0.1179 35 1 10.5289 2.7051 0.0419 36 1 10.4170 6.5457 0.0684 37 1 11.5151 5.1801 0.3809 38 1 13.6447 7.6659 -1.3063 39 1 4.5487 -0.2241 1.0092 40 1 3.6597 -0.7968 -0.4225 41 1 5.1411 0.1695 -0.6225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597260822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = 40.795068 kcal Electronic energy + Delta-G solvation = -24836.669952 eV Core-core repulsion = 21105.290374 eV Total energy + Delta-G solvation = -3731.379578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33741 -41.30423 -39.89571 -37.94576 -35.97350 -34.75497 -33.52215 -32.53921 -32.50052 -31.18169 -28.60072 -28.29564 -27.64148 -25.35760 -24.22729 -22.97939 -22.72667 -22.19731 -20.66775 -19.01420 -18.70070 -18.11502 -17.49045 -16.76642 -16.69926 -16.63480 -16.41117 -16.33969 -16.11231 -15.68733 -15.36971 -14.69597 -14.51967 -14.40593 -14.33653 -14.07626 -13.93416 -13.69556 -13.13287 -13.03299 -13.01298 -12.94725 -12.76009 -12.44309 -12.32943 -12.06046 -11.90740 -11.81655 -11.21473 -10.81926 -10.76191 -10.52031 -9.81805 -9.74738 -9.05188 -8.59500 -8.26665 -6.56737 -0.23951 0.43696 0.50811 0.58784 1.36796 1.42448 1.51709 1.61507 2.29747 2.34828 2.59564 2.76860 2.94448 3.25543 3.50733 3.86350 3.89679 4.04980 4.22263 4.31275 4.35076 4.44406 4.45929 4.51476 4.52938 4.77256 4.80502 4.84910 4.88116 4.91400 4.95925 5.06372 5.24363 5.31322 5.42566 5.50476 5.52239 5.66573 5.69464 5.80552 5.99684 6.11929 6.41482 6.48809 6.60802 6.80160 7.17131 7.82572 8.65633 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.002350 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.153679 B =11913.969221 C =12116.820096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.103 3.897 4 C -0.180 4.180 5 C -0.099 4.099 6 C -0.105 4.105 7 C -0.094 4.094 8 C 0.519 3.481 9 O -0.591 6.591 10 N -0.700 5.700 11 C 0.454 3.546 12 C -0.344 4.344 13 C 0.179 3.821 14 N -0.344 5.344 15 C 0.266 3.734 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.030 3.970 19 N -0.912 5.912 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.274 1.274 24 N -0.461 5.461 25 H 0.453 0.547 26 C -0.094 4.094 27 C -0.095 4.095 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.176 0.824 35 H 0.226 0.774 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.274 0.726 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.514 -7.222 2.780 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.057 3.943 4 C -0.198 4.198 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.097 4.097 8 C 0.307 3.693 9 O -0.475 6.475 10 N -0.464 5.464 11 C 0.204 3.796 12 C -0.376 4.376 13 C 0.034 3.966 14 N -0.129 5.129 15 C 0.149 3.851 16 C -0.603 4.603 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.199 1.199 24 N -0.184 5.184 25 H 0.302 0.698 26 C -0.096 4.096 27 C -0.151 4.151 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.193 0.807 35 H 0.242 0.758 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.244 -6.805 2.778 19.669 hybrid contribution 0.676 0.346 -0.816 1.115 sum -17.568 -6.459 1.962 18.821 Atomic orbital electron populations 1.23372 0.76349 1.05593 1.02405 1.86046 1.23453 1.26256 1.88926 1.18712 0.90969 0.85538 0.99037 1.21689 1.01409 0.91412 1.05335 1.21270 0.93688 0.98415 0.98250 1.21464 0.94186 0.98004 0.98755 1.19496 0.92475 0.93550 1.04179 1.19280 0.89344 0.84392 0.76282 1.90531 1.66464 1.40271 1.50265 1.68798 1.04502 1.29040 1.44057 1.19355 0.90372 0.84540 0.85292 1.22417 0.91118 1.01680 1.22377 1.23431 1.01357 0.81460 0.90400 1.47946 0.95062 1.07483 1.62366 1.19792 0.78731 0.88557 0.98027 1.21622 1.15596 1.29037 0.94030 0.92263 1.25593 0.95907 0.94149 1.01608 1.69964 1.22197 1.28234 1.34602 0.85404 0.78358 0.77988 0.79340 1.19803 1.20431 1.19887 1.44560 0.95650 1.09335 1.68836 0.69833 1.19501 0.91795 0.95489 1.02785 1.20664 0.98975 0.93307 1.02193 0.86426 0.91457 0.91518 0.82001 0.82182 0.84640 0.80651 0.75803 0.93690 0.90861 0.91685 0.92238 0.91695 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.76 9.43 -92.53 -0.87 -8.63 16 3 C 0.10 2.74 6.65 22.47 0.15 2.89 16 4 C -0.18 -3.76 9.03 22.41 0.20 -3.56 16 5 C -0.10 -2.16 10.03 22.22 0.22 -1.94 16 6 C -0.11 -3.10 9.58 22.52 0.22 -2.88 16 7 C -0.09 -3.34 5.87 -20.07 -0.12 -3.45 16 8 C 0.52 21.26 7.61 87.03 0.66 21.92 16 9 O -0.59 -25.58 10.27 -4.88 -0.05 -25.63 16 10 N -0.70 -28.03 9.68 -311.19 -3.01 -31.04 16 11 C 0.45 17.49 8.07 133.89 1.08 18.57 16 12 C -0.34 -12.55 9.52 22.24 0.21 -12.34 16 13 C 0.18 5.69 11.45 83.25 0.95 6.64 16 14 N -0.34 -12.19 3.63 -350.81 -1.27 -13.46 16 15 C 0.27 10.65 6.19 85.64 0.53 11.18 16 16 C -0.56 -26.04 9.39 25.60 0.24 -25.80 16 17 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 18 C 0.03 1.42 5.46 84.66 0.46 1.88 16 19 N -0.91 -45.26 13.29 21.45 0.28 -44.98 16 20 Si 0.96 38.61 29.54 68.60 2.03 40.63 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 N -0.46 -16.05 7.38 -54.81 -0.40 -16.46 16 25 H 0.45 13.88 8.96 -213.29 -1.91 11.97 16 26 C -0.09 -3.10 5.93 -19.52 -0.12 -3.22 16 27 C -0.10 -3.14 8.57 71.24 0.61 -2.53 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 31 H 0.16 2.11 6.28 -2.91 -0.02 2.09 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.14 3.98 7.56 -2.91 -0.02 3.96 16 34 H 0.18 6.78 5.77 -2.91 -0.02 6.76 16 35 H 0.23 5.25 8.06 -2.91 -0.02 5.23 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.90 7.34 -2.39 -0.02 1.88 16 41 H 0.07 2.68 5.86 -2.38 -0.01 2.67 16 Total: -1.00 -63.10 349.61 2.28 -60.82 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.83 Total: 30.07 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 6.42 Total: 8.68 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.41 Total: -105.94 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.92 Total: -34.26 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.63 kcal Total: -63.10 2.28 -60.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597260822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.611 kcal (2) G-P(sol) polarization free energy of solvation -63.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds