Wall clock time and date at job start Tue Mar 31 2020 10:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00302 * 2 1 4 4 H 1.48496 * 109.47522 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47153 * 300.00325 * 3 2 1 6 6 H 1.48501 * 109.47296 * 59.99827 * 3 2 1 7 7 C 1.37884 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99823 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49256 * 300.06137 * 9 7 2 11 11 C 1.53041 * 109.49394 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53611 * 178.67946 * 11 9 7 13 13 C 1.53186 * 109.31125 * 61.36328 * 12 11 9 14 14 N 1.46932 * 108.77780 * 305.36527 * 13 12 11 15 15 C 1.34770 * 120.62904 * 233.58446 * 14 13 12 16 16 O 1.21625 * 119.99867 * 184.29866 * 15 14 13 17 17 C 1.47235 * 120.00220 * 4.30483 * 15 14 13 18 18 C 1.38030 * 126.81587 * 310.09469 * 17 15 14 19 19 N 1.34100 * 107.88389 * 180.29308 * 18 17 15 20 20 H 0.97001 * 125.15350 * 179.68017 * 19 18 17 21 21 N 1.39767 * 109.69254 * 359.72335 * 19 18 17 22 22 C 1.31365 * 109.08657 * 359.97438 * 21 19 18 23 23 C 1.48315 * 126.51815 * 180.02562 * 22 21 19 24 24 C 1.46737 * 127.11944 * 325.31855 * 23 22 21 25 25 C 1.34353 * 106.02636 * 180.12921 * 24 23 22 26 26 O 1.34163 * 109.00175 * 359.59752 * 25 24 23 27 27 C 1.34081 * 110.75550 * 0.27151 * 26 25 24 28 28 C 1.46925 * 118.73419 * 53.86122 * 14 13 12 29 29 H 0.97002 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46261 * 58.66031 * 11 9 7 31 31 H 1.09001 * 109.44968 * 298.69496 * 11 9 7 32 32 H 1.09003 * 109.49674 * 301.41342 * 12 11 9 33 33 H 1.08993 * 109.49588 * 181.31699 * 12 11 9 34 34 H 1.08996 * 109.58698 * 185.57853 * 13 12 11 35 35 H 1.09006 * 109.70677 * 65.22137 * 13 12 11 36 36 H 1.08003 * 126.05327 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.98440 * 359.97438 * 24 23 22 38 38 H 1.08001 * 125.50064 * 179.86826 * 25 24 23 39 39 H 1.07998 * 125.77494 * 179.97438 * 27 26 25 40 40 H 1.08992 * 109.58940 * 65.92965 * 28 14 13 41 41 H 1.09005 * 109.58250 * 186.35443 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6230 -2.5574 0.8874 11 6 2.2449 -3.6629 -0.0015 12 6 1.4808 -4.9886 0.0306 13 6 0.6065 -5.0998 -1.2223 14 7 -0.2520 -3.9104 -1.3070 15 6 -1.5882 -4.0354 -1.4305 16 8 -2.2805 -3.0464 -1.5782 17 6 -2.2100 -5.3693 -1.3866 18 6 -1.8343 -6.4814 -2.1128 19 7 -2.6596 -7.4860 -1.7840 20 1 -2.6217 -8.3829 -2.1515 21 7 -3.5831 -7.0446 -0.8323 22 6 -3.3488 -5.7810 -0.5601 23 6 -4.0980 -4.9306 0.3965 24 6 -5.5344 -4.9839 0.6919 25 6 -5.7594 -4.0314 1.6123 26 8 -4.6002 -3.4213 1.9020 27 6 -3.5954 -3.9451 1.1851 28 6 0.3745 -2.5823 -1.2606 29 1 -0.4850 0.8401 0.0004 30 1 2.8866 -3.5923 0.8769 31 1 2.8566 -3.6179 -0.9025 32 1 0.8500 -5.0235 0.9188 33 1 2.1895 -5.8164 0.0544 34 1 -0.0134 -5.9939 -1.1571 35 1 1.2391 -5.1576 -2.1081 36 1 -1.0230 -6.5319 -2.8239 37 1 -6.2630 -5.6514 0.2560 38 1 -6.7180 -3.7977 2.0516 39 1 -2.5616 -3.6357 1.2271 40 1 0.9904 -2.4376 -2.1481 41 1 -0.3985 -1.8148 -1.2206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:22 Heat of formation + Delta-G solvation = 53.903012 kcal Electronic energy + Delta-G solvation = -26643.993189 eV Core-core repulsion = 22913.182014 eV Total energy + Delta-G solvation = -3730.811175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15766 -40.98536 -38.93312 -36.53547 -33.53374 -33.35782 -31.79105 -30.98156 -30.49386 -29.47921 -29.05331 -25.08401 -24.91166 -23.12734 -22.21799 -21.82943 -21.09602 -20.00126 -19.37521 -18.73210 -17.41003 -17.14767 -16.47109 -15.93579 -15.70751 -15.08159 -14.85934 -14.71806 -14.40606 -14.12326 -13.85179 -13.53559 -13.26983 -12.84177 -12.68268 -12.56857 -12.47850 -12.19232 -11.95818 -11.87757 -11.01018 -10.99888 -10.91065 -10.49332 -10.43572 -10.26281 -10.20162 -9.88479 -9.34720 -9.16940 -9.12610 -8.89882 -8.60892 -8.42505 -8.19292 -7.70214 -5.99228 -4.07455 1.56107 1.82650 2.21818 2.65857 3.01691 3.30203 3.31115 3.39851 3.42337 3.52892 3.87873 4.41213 4.44892 4.66816 4.92553 5.18647 5.29681 5.31050 5.34361 5.40252 5.50049 5.56618 5.65825 5.70825 5.98295 5.99283 6.18638 6.30361 6.31934 6.35442 6.56271 6.60872 6.68509 6.86845 6.97281 7.07956 7.17468 7.29786 7.31506 7.54772 7.65447 7.87550 8.00688 8.29457 8.39698 8.92928 8.98765 9.58320 11.06258 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004758 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.570999 B = 5883.699168 C = 7267.124290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.103 3.897 14 N -0.601 5.601 15 C 0.578 3.422 16 O -0.527 6.527 17 C -0.260 4.260 18 C 0.090 3.910 19 N -0.471 5.471 20 H 0.441 0.559 21 N -0.286 5.286 22 C 0.199 3.801 23 C -0.133 4.133 24 C -0.188 4.188 25 C -0.045 4.045 26 O -0.174 6.174 27 C 0.039 3.961 28 C 0.114 3.886 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.187 0.813 37 H 0.150 0.850 38 H 0.203 0.797 39 H 0.208 0.792 40 H 0.042 0.958 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -15.434 -1.687 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.021 4.021 14 N -0.334 5.334 15 C 0.365 3.635 16 O -0.404 6.404 17 C -0.275 4.275 18 C -0.059 4.059 19 N -0.177 5.177 20 H 0.284 0.716 21 N -0.108 5.108 22 C 0.031 3.969 23 C -0.136 4.136 24 C -0.208 4.208 25 C -0.111 4.111 26 O -0.069 6.069 27 C -0.032 4.032 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.203 0.797 37 H 0.168 0.832 38 H 0.220 0.780 39 H 0.224 0.776 40 H 0.060 0.940 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.540 -15.528 -1.331 16.901 hybrid contribution 1.120 0.787 -0.747 1.560 sum -5.419 -14.741 -2.078 15.843 Atomic orbital electron populations 1.69882 1.05683 1.26774 1.49312 1.25037 0.94870 0.99189 0.94828 0.86563 0.80042 0.83918 0.77641 1.19845 1.20997 1.21018 1.21109 0.92919 0.90119 1.51825 0.92377 1.19044 0.92630 0.92244 0.93901 0.95303 1.21633 0.98562 0.94110 1.00527 1.21932 0.98552 0.99016 0.97613 1.21792 0.93429 0.88544 0.98328 1.48428 1.05038 1.08852 1.71043 1.17227 0.82054 0.86735 0.77530 1.90823 1.61871 1.38598 1.49101 1.21557 1.02922 0.95947 1.07121 1.22924 0.95793 0.87539 0.99599 1.45832 1.25114 1.12516 1.34232 0.71559 1.77267 1.12780 1.12179 1.08573 1.20760 0.92226 0.89831 0.94082 1.18860 0.92925 1.00423 1.01416 1.22688 0.94512 1.02171 1.01416 1.23822 0.89202 0.96509 1.01598 1.83939 1.15903 1.52616 1.54441 1.24209 0.93028 0.93501 0.92494 1.22387 0.98622 0.81126 0.98484 0.92668 0.93079 0.93220 0.92191 0.92422 0.90866 0.92167 0.79654 0.83178 0.78025 0.77570 0.93980 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 11.41 55.43 0.63 -24.47 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -13.79 8.56 -34.44 -0.29 -14.09 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 2.26 -91.43 -0.21 0.77 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.12 5.10 -26.69 -0.14 -2.26 16 12 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 13 C 0.10 1.52 5.90 -3.71 -0.02 1.50 16 14 N -0.60 -11.61 2.97 -173.85 -0.52 -12.12 16 15 C 0.58 11.63 6.90 -12.61 -0.09 11.54 16 16 O -0.53 -12.92 16.38 5.26 0.09 -12.83 16 17 C -0.26 -4.27 5.34 -102.95 -0.55 -4.82 16 18 C 0.09 1.05 9.65 -16.64 -0.16 0.89 16 19 N -0.47 -5.01 7.20 30.82 0.22 -4.79 16 20 H 0.44 2.79 8.96 -182.85 -1.64 1.15 16 21 N -0.29 -4.20 12.66 34.58 0.44 -3.76 16 22 C 0.20 3.33 7.34 -80.55 -0.59 2.74 16 23 C -0.13 -2.25 6.23 -103.17 -0.64 -2.89 16 24 C -0.19 -2.67 11.15 -37.52 -0.42 -3.09 16 25 C -0.04 -0.58 12.04 29.36 0.35 -0.23 16 26 O -0.17 -2.81 10.55 6.68 0.07 -2.74 16 27 C 0.04 0.67 11.46 29.88 0.34 1.02 16 28 C 0.11 2.67 5.42 -3.49 -0.02 2.65 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.91 4.57 -51.93 -0.24 0.67 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.19 1.47 7.60 -52.48 -0.40 1.07 16 37 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.21 3.76 7.89 -52.49 -0.41 3.34 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.12 3.38 5.17 -51.93 -0.27 3.11 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -33.85 344.10 -7.89 -41.75 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.30 Total: 4.68 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.69 Total: -6.88 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.78 Total: -45.15 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.16 Total: -15.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.85 -7.89 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.649 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds