Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00302 * 2 1 4 4 H 1.48496 * 109.47522 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47153 * 300.00325 * 3 2 1 6 6 H 1.48501 * 109.47296 * 59.99827 * 3 2 1 7 7 C 1.37884 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99823 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49256 * 300.06137 * 9 7 2 11 11 C 1.53041 * 109.49394 * 180.02562 * 9 7 2 12 12 C 1.53048 * 109.53611 * 178.67946 * 11 9 7 13 13 C 1.53186 * 109.31125 * 61.36328 * 12 11 9 14 14 N 1.46932 * 108.77780 * 305.36527 * 13 12 11 15 15 C 1.34770 * 120.62904 * 233.58446 * 14 13 12 16 16 O 1.21625 * 119.99867 * 184.29866 * 15 14 13 17 17 C 1.47235 * 120.00220 * 4.30483 * 15 14 13 18 18 C 1.38030 * 126.81587 * 310.09469 * 17 15 14 19 19 N 1.34100 * 107.88389 * 180.29308 * 18 17 15 20 20 H 0.97001 * 125.15350 * 179.68017 * 19 18 17 21 21 N 1.39767 * 109.69254 * 359.72335 * 19 18 17 22 22 C 1.31365 * 109.08657 * 359.97438 * 21 19 18 23 23 C 1.48315 * 126.51815 * 180.02562 * 22 21 19 24 24 C 1.46737 * 127.11944 * 325.31855 * 23 22 21 25 25 C 1.34353 * 106.02636 * 180.12921 * 24 23 22 26 26 O 1.34163 * 109.00175 * 359.59752 * 25 24 23 27 27 C 1.34081 * 110.75550 * 0.27151 * 26 25 24 28 28 C 1.46925 * 118.73419 * 53.86122 * 14 13 12 29 29 H 0.97002 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46261 * 58.66031 * 11 9 7 31 31 H 1.09001 * 109.44968 * 298.69496 * 11 9 7 32 32 H 1.09003 * 109.49674 * 301.41342 * 12 11 9 33 33 H 1.08993 * 109.49588 * 181.31699 * 12 11 9 34 34 H 1.08996 * 109.58698 * 185.57853 * 13 12 11 35 35 H 1.09006 * 109.70677 * 65.22137 * 13 12 11 36 36 H 1.08003 * 126.05327 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.98440 * 359.97438 * 24 23 22 38 38 H 1.08001 * 125.50064 * 179.86826 * 25 24 23 39 39 H 1.07998 * 125.77494 * 179.97438 * 27 26 25 40 40 H 1.08992 * 109.58940 * 65.92965 * 28 14 13 41 41 H 1.09005 * 109.58250 * 186.35443 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6230 -2.5574 0.8874 11 6 2.2449 -3.6629 -0.0015 12 6 1.4808 -4.9886 0.0306 13 6 0.6065 -5.0998 -1.2223 14 7 -0.2520 -3.9104 -1.3070 15 6 -1.5882 -4.0354 -1.4305 16 8 -2.2805 -3.0464 -1.5782 17 6 -2.2100 -5.3693 -1.3866 18 6 -1.8343 -6.4814 -2.1128 19 7 -2.6596 -7.4860 -1.7840 20 1 -2.6217 -8.3829 -2.1515 21 7 -3.5831 -7.0446 -0.8323 22 6 -3.3488 -5.7810 -0.5601 23 6 -4.0980 -4.9306 0.3965 24 6 -5.5344 -4.9839 0.6919 25 6 -5.7594 -4.0314 1.6123 26 8 -4.6002 -3.4213 1.9020 27 6 -3.5954 -3.9451 1.1851 28 6 0.3745 -2.5823 -1.2606 29 1 -0.4850 0.8401 0.0004 30 1 2.8866 -3.5923 0.8769 31 1 2.8566 -3.6179 -0.9025 32 1 0.8500 -5.0235 0.9188 33 1 2.1895 -5.8164 0.0544 34 1 -0.0134 -5.9939 -1.1571 35 1 1.2391 -5.1576 -2.1081 36 1 -1.0230 -6.5319 -2.8239 37 1 -6.2630 -5.6514 0.2560 38 1 -6.7180 -3.7977 2.0516 39 1 -2.5616 -3.6357 1.2271 40 1 0.9904 -2.4376 -2.1481 41 1 -0.3985 -1.8148 -1.2206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = 30.356647 kcal Electronic energy + Delta-G solvation = -26645.014236 eV Core-core repulsion = 22913.182014 eV Total energy + Delta-G solvation = -3731.832222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.34662 -42.12498 -40.44137 -38.16344 -35.27270 -34.65244 -33.45995 -32.08932 -31.90610 -30.95348 -30.26258 -27.01574 -26.39649 -24.31583 -23.50277 -23.41689 -22.26900 -21.34055 -20.72768 -20.04992 -18.78598 -18.33464 -18.20682 -17.53057 -16.93368 -16.61000 -16.44371 -16.07024 -15.85563 -15.40201 -15.20753 -14.83483 -14.78101 -14.44903 -14.18435 -13.95289 -13.77984 -13.56339 -13.46535 -13.24159 -12.89786 -12.64251 -12.25445 -12.19957 -12.14229 -11.80566 -11.60110 -11.40468 -11.07616 -10.91037 -10.68698 -10.49446 -10.24554 -9.79575 -9.41038 -9.28967 -8.07848 -6.24134 0.37351 0.69820 1.10061 1.40968 1.43142 1.54468 1.65033 1.79834 2.09311 2.18519 2.41844 2.48523 3.20749 3.32692 3.58268 3.90374 3.96582 4.12301 4.17353 4.21054 4.31716 4.42508 4.49161 4.56539 4.64515 4.79513 4.84232 4.85917 4.92560 5.07823 5.13596 5.19523 5.29416 5.32566 5.42654 5.47143 5.59831 5.71042 5.95018 6.04139 6.10892 6.27852 6.37252 6.48467 6.76078 6.88813 7.42202 7.46787 8.95544 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004758 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.570999 B = 5883.699168 C = 7267.124290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.040 3.960 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.099 3.901 14 N -0.602 5.602 15 C 0.579 3.421 16 O -0.588 6.588 17 C -0.303 4.303 18 C 0.132 3.868 19 N -0.441 5.441 20 H 0.464 0.536 21 N -0.293 5.293 22 C 0.177 3.823 23 C -0.140 4.140 24 C -0.203 4.203 25 C -0.029 4.029 26 O -0.191 6.191 27 C 0.002 3.998 28 C 0.128 3.872 29 H 0.258 0.742 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.173 0.827 38 H 0.252 0.748 39 H 0.181 0.819 40 H 0.039 0.961 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -18.695 -2.921 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.023 4.023 14 N -0.333 5.333 15 C 0.368 3.632 16 O -0.469 6.469 17 C -0.318 4.318 18 C -0.019 4.019 19 N -0.150 5.150 20 H 0.313 0.687 21 N -0.116 5.116 22 C 0.010 3.990 23 C -0.144 4.144 24 C -0.222 4.222 25 C -0.094 4.094 26 O -0.086 6.086 27 C -0.068 4.068 28 C 0.006 3.994 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.191 0.809 38 H 0.268 0.732 39 H 0.198 0.802 40 H 0.058 0.942 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.715 -18.877 -2.561 19.889 hybrid contribution 0.845 1.708 -0.375 1.942 sum -4.870 -17.169 -2.935 18.086 Atomic orbital electron populations 1.70091 1.07331 1.27076 1.50668 1.25850 0.95499 1.02735 0.94706 0.85566 0.79361 0.79769 0.77334 1.18415 1.20959 1.21050 1.21543 0.93252 0.91510 1.50931 0.92043 1.18970 0.93082 0.93693 0.92222 0.99612 1.21517 0.97637 0.94160 1.00927 1.21901 0.98916 0.98212 0.97443 1.22169 0.93471 0.87485 0.99178 1.48388 1.05567 1.08776 1.70605 1.17734 0.81822 0.87694 0.75989 1.90776 1.63183 1.41130 1.51802 1.21245 1.04553 0.95534 1.10504 1.23443 0.95379 0.85482 0.97592 1.45867 1.23353 1.13437 1.32317 0.68661 1.77210 1.13780 1.11084 1.09545 1.20835 0.92771 0.90639 0.94778 1.19255 0.94514 0.99857 1.00731 1.23001 0.93573 1.03398 1.02270 1.24815 0.89445 0.94820 1.00323 1.83909 1.16750 1.53294 1.54686 1.23833 0.92804 0.95365 0.94848 1.21777 0.97049 0.82671 0.97928 0.93246 0.93281 0.92127 0.93812 0.87867 0.87726 0.89105 0.74845 0.80938 0.73224 0.80210 0.94247 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.61 11.41 21.45 0.24 -55.37 16 2 C 0.01 0.65 5.30 84.66 0.45 1.10 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.53 -29.20 8.56 25.60 0.22 -28.98 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.04 1.97 2.26 -11.32 -0.03 1.94 16 10 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 11 C -0.10 -3.94 5.10 30.62 0.16 -3.78 16 12 C -0.13 -3.64 6.08 30.67 0.19 -3.45 16 13 C 0.10 2.62 5.90 86.36 0.51 3.13 16 14 N -0.60 -23.57 2.97 -822.18 -2.44 -26.01 16 15 C 0.58 24.12 6.90 86.61 0.60 24.72 16 16 O -0.59 -31.08 16.38 -4.11 -0.07 -31.15 16 17 C -0.30 -9.69 5.34 -18.78 -0.10 -9.79 16 18 C 0.13 2.52 9.65 84.30 0.81 3.33 16 19 N -0.44 -7.51 7.20 -56.41 -0.41 -7.92 16 20 H 0.46 3.40 8.96 -213.53 -1.91 1.48 16 21 N -0.29 -7.96 12.66 -44.51 -0.56 -8.52 16 22 C 0.18 5.88 7.34 44.08 0.32 6.21 16 23 C -0.14 -4.94 6.23 -18.93 -0.12 -5.06 16 24 C -0.20 -5.71 11.15 23.60 0.26 -5.45 16 25 C -0.03 -0.73 12.04 66.93 0.81 0.08 16 26 O -0.19 -6.54 10.55 0.99 0.01 -6.53 16 27 C 0.00 0.08 11.46 67.27 0.77 0.85 16 28 C 0.13 6.30 5.42 86.51 0.47 6.76 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.13 4.57 -2.39 -0.01 2.12 16 35 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.24 2.14 7.60 -2.91 -0.02 2.12 16 37 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.25 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.18 7.62 7.89 -2.91 -0.02 7.60 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 4.47 5.17 -2.38 -0.01 4.46 16 Total: -1.00 -83.12 344.10 3.29 -79.84 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -0.84 Total: 17.62 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.32 Total: -8.38 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -3.16 Total: -97.82 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.06 Total: -37.68 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -83.12 3.29 -79.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.193 kcal (2) G-P(sol) polarization free energy of solvation -83.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds