Wall clock time and date at job start Tue Mar 31 2020 10:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47186 * 299.99610 * 3 2 1 6 6 H 1.48507 * 109.47569 * 59.99793 * 3 2 1 7 7 C 1.37873 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00300 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99997 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49766 * 300.07003 * 9 7 2 11 11 C 1.53033 * 109.49826 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53719 * 178.65647 * 11 9 7 13 13 C 1.53183 * 109.31385 * 61.36544 * 12 11 9 14 14 N 1.46926 * 108.77558 * 305.36537 * 13 12 11 15 15 C 1.34774 * 120.62844 * 233.58642 * 14 13 12 16 16 O 1.21569 * 119.99868 * 186.05235 * 15 14 13 17 17 C 1.47746 * 120.00344 * 6.04715 * 15 14 13 18 18 C 1.41110 * 126.30339 * 186.81278 * 17 15 14 19 19 C 1.37006 * 105.42037 * 180.02562 * 18 17 15 20 20 C 1.47332 * 126.63603 * 179.97438 * 19 18 17 21 21 C 1.36147 * 125.95243 * 179.97438 * 20 19 18 22 22 C 1.40871 * 106.73070 * 179.97438 * 21 20 19 23 23 C 1.34760 * 107.05689 * 0.26848 * 22 21 20 24 24 O 1.34332 * 108.70398 * 359.56509 * 23 22 21 25 25 N 1.36550 * 106.72769 * 0.24378 * 19 18 17 26 26 H 0.96998 * 125.02727 * 179.75763 * 25 19 18 27 27 N 1.28446 * 109.94671 * 359.58493 * 25 19 18 28 28 C 1.46922 * 118.73909 * 53.86442 * 14 13 12 29 29 H 0.96993 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46078 * 58.63367 * 11 9 7 31 31 H 1.09005 * 109.46253 * 298.67557 * 11 9 7 32 32 H 1.09004 * 109.49408 * 301.41194 * 12 11 9 33 33 H 1.09004 * 109.49544 * 181.31800 * 12 11 9 34 34 H 1.08998 * 109.58572 * 185.57922 * 13 12 11 35 35 H 1.09004 * 109.58876 * 65.15137 * 13 12 11 36 36 H 1.07999 * 127.28996 * 359.96573 * 18 17 15 37 37 H 1.08003 * 126.63172 * 359.96461 * 21 20 19 38 38 H 1.08003 * 126.46713 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.64666 * 179.74195 * 23 22 21 40 40 H 1.09003 * 109.59130 * 65.92258 * 28 14 13 41 41 H 1.09006 * 109.58918 * 186.35156 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6230 -2.5567 0.8895 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 0.0344 13 6 0.6055 -5.1007 -1.2175 14 7 -0.2532 -3.9114 -1.3021 15 6 -1.5895 -4.0367 -1.4241 16 8 -2.2785 -3.0512 -1.6036 17 6 -2.2172 -5.3715 -1.3397 18 6 -3.5745 -5.6732 -1.5807 19 6 -3.6880 -7.0241 -1.3830 20 6 -4.9136 -7.8316 -1.5122 21 6 -5.0105 -9.1749 -1.3128 22 6 -6.3561 -9.5229 -1.5421 23 6 -7.0067 -8.3899 -1.8724 24 8 -6.1338 -7.3691 -1.8476 25 7 -2.4469 -7.4765 -1.0374 26 1 -2.2273 -8.3991 -0.8340 27 7 -1.6124 -6.5000 -1.0248 28 6 0.3733 -2.5832 -1.2575 29 1 -0.4850 0.8400 -0.0004 30 1 2.8877 -3.5915 0.8780 31 1 2.8560 -3.6186 -0.9012 32 1 0.8512 -5.0228 0.9233 33 1 2.1899 -5.8163 0.0580 34 1 -0.0143 -5.9948 -1.1509 35 1 1.2390 -5.1577 -2.1027 36 1 -4.3581 -4.9847 -1.8605 37 1 -4.2103 -9.8442 -1.0330 38 1 -6.7845 -10.5118 -1.4709 39 1 -8.0566 -8.3145 -2.1139 40 1 0.9883 -2.4391 -2.1458 41 1 -0.3997 -1.8157 -1.2172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:57 Heat of formation + Delta-G solvation = 66.390463 kcal Electronic energy + Delta-G solvation = -25688.426707 eV Core-core repulsion = 21958.157028 eV Total energy + Delta-G solvation = -3730.269678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07422 -42.42209 -39.05595 -36.56783 -33.66518 -33.33607 -32.32168 -31.90804 -31.49987 -29.67811 -28.51369 -25.44709 -24.91538 -23.16917 -22.69452 -21.93228 -21.65167 -20.84683 -19.58497 -19.03581 -18.00029 -17.30047 -16.55507 -16.48595 -15.91881 -15.58644 -15.05227 -14.76517 -14.39524 -14.08987 -13.97637 -13.52372 -13.35080 -13.27378 -13.08633 -12.68712 -12.59065 -12.53484 -12.08967 -11.82201 -11.28424 -10.95027 -10.64248 -10.53528 -10.41299 -10.19868 -10.10149 -9.92474 -9.70337 -9.46236 -9.39726 -9.05050 -8.82786 -8.38287 -8.29537 -7.65389 -5.95041 -4.03377 0.72959 1.75342 2.01125 2.04895 2.61527 2.98752 3.33532 3.41853 3.44995 3.71577 3.87019 4.18301 4.45033 4.47692 4.53300 4.61800 5.02888 5.23878 5.35269 5.38131 5.43485 5.57685 5.64711 5.70127 5.72073 5.93505 6.04289 6.12665 6.26808 6.40171 6.45965 6.62490 6.68918 6.77416 6.85089 6.96949 7.05577 7.22932 7.37601 7.68174 7.76618 7.93130 8.05207 8.32653 8.43914 8.87660 9.01402 9.61967 11.10544 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.002881 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.185865 B = 9715.123567 C =10536.123931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.078 3.922 14 N -0.589 5.589 15 C 0.586 3.414 16 O -0.528 6.528 17 C 0.012 3.988 18 C -0.141 4.141 19 C 0.070 3.930 20 C 0.062 3.938 21 C -0.198 4.198 22 C -0.210 4.210 23 C -0.028 4.028 24 O -0.159 6.159 25 N -0.375 5.375 26 H 0.445 0.555 27 N -0.237 5.237 28 C 0.113 3.887 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.209 0.791 40 H 0.044 0.956 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -21.683 -3.465 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.166 4.166 13 C -0.046 4.046 14 N -0.320 5.320 15 C 0.370 3.630 16 O -0.403 6.403 17 C -0.148 4.148 18 C -0.168 4.168 19 C -0.055 4.055 20 C 0.010 3.990 21 C -0.219 4.219 22 C -0.229 4.229 23 C -0.097 4.097 24 O -0.053 6.053 25 N -0.091 5.091 26 H 0.290 0.710 27 N -0.072 5.072 28 C -0.007 4.007 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.226 0.774 40 H 0.062 0.938 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.619 -21.054 -3.344 23.387 hybrid contribution -0.153 0.352 -0.020 0.385 sum -9.772 -20.701 -3.365 23.138 Atomic orbital electron populations 1.69899 1.05724 1.26714 1.49477 1.25062 0.94884 0.99248 0.94900 0.86541 0.80029 0.83854 0.77601 1.19830 1.20970 1.21056 1.21126 0.92937 0.90116 1.51589 0.92310 1.19055 0.92651 0.92320 0.93863 0.95252 1.21649 0.98537 0.94379 1.00400 1.21875 0.98376 0.98582 0.97794 1.22502 0.94484 0.89948 0.97704 1.48351 1.04727 1.09528 1.69412 1.16986 0.82524 0.85173 0.78330 1.90810 1.62301 1.37277 1.49872 1.22336 0.93113 0.93093 1.06235 1.21894 0.96973 0.93030 1.04952 1.18188 0.84915 0.92660 1.09740 1.18867 0.83376 0.90988 1.05768 1.21751 0.98422 0.93719 1.08003 1.21725 0.93855 1.00036 1.07262 1.24246 0.95593 0.84867 1.04954 1.84120 1.16506 1.36749 1.67925 1.43680 1.04030 1.10657 1.50699 0.71018 1.73389 1.18058 0.95841 1.19942 1.22441 0.98651 0.80922 0.98670 0.92705 0.93177 0.93279 0.92346 0.92514 0.86173 0.92748 0.81267 0.83282 0.82917 0.77435 0.93756 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 11.41 55.43 0.63 -25.37 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.29 8.56 -34.44 -0.29 -14.59 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.02 2.26 -91.42 -0.21 0.81 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.32 5.10 -26.69 -0.14 -2.45 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C 0.08 1.36 6.32 -3.72 -0.02 1.33 16 14 N -0.59 -12.65 2.97 -173.65 -0.51 -13.16 16 15 C 0.59 12.71 7.69 -12.38 -0.10 12.62 16 16 O -0.53 -13.33 16.36 5.30 0.09 -13.24 16 17 C 0.01 0.21 6.85 -82.88 -0.57 -0.36 16 18 C -0.14 -2.13 10.77 -38.94 -0.42 -2.55 16 19 C 0.07 0.84 7.10 -82.51 -0.59 0.26 16 20 C 0.06 0.65 7.17 -36.64 -0.26 0.39 16 21 C -0.20 -1.61 10.84 -39.34 -0.43 -2.03 16 22 C -0.21 -1.46 10.88 -39.82 -0.43 -1.90 16 23 C -0.03 -0.20 12.08 29.50 0.36 0.15 16 24 O -0.16 -1.68 10.68 4.45 0.05 -1.64 16 25 N -0.37 -4.00 6.90 33.25 0.23 -3.77 16 26 H 0.44 2.84 8.96 -190.46 -1.71 1.13 16 27 N -0.24 -3.37 8.58 33.36 0.29 -3.09 16 28 C 0.11 2.83 5.41 -3.48 -0.02 2.81 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.88 3.75 -110.90 -0.42 1.47 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 37 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.12 3.52 5.19 -51.93 -0.27 3.25 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -33.91 343.36 -9.03 -42.95 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.58 Total: 1.90 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.37 Total: -6.25 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.63 Total: -45.39 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.13 Total: -14.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.91 -9.03 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.337 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds