Wall clock time and date at job start Tue Mar 31 2020 11:16:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.39728 * 125.78077 * 2 1
4 4 C 1.36143 * 107.85874 * 180.14535 * 3 2 1
5 5 N 1.39391 * 126.26378 * 179.90252 * 4 3 2
6 6 C 1.34777 * 119.99926 * 359.69831 * 5 4 3
7 7 O 1.21605 * 119.99926 * 359.97438 * 6 5 4
8 8 C 1.47500 * 119.99690 * 179.97438 * 6 5 4
9 9 C 1.39721 * 120.19383 * 90.31720 * 8 6 5
10 10 C 1.50705 * 120.04624 * 359.97438 * 9 8 6
11 11 C 1.37783 * 119.90732 * 180.25127 * 9 8 6
12 12 C 1.38553 * 120.29869 * 359.44576 * 11 9 8
13 13 C 1.38063 * 120.39453 * 0.25687 * 12 11 9
14 14 C 1.38698 * 120.08359 * 0.02562 * 13 12 11
15 15 O 1.35654 * 120.15124 * 179.97438 * 14 13 12
16 16 N 1.35804 * 107.47498 * 359.64572 * 4 3 2
17 17 C 1.46500 * 126.09606 * 180.20270 * 16 4 3
18 18 C 1.50704 * 109.46999 * 90.00210 * 17 16 4
19 19 H 1.07997 * 120.00047 * 359.97438 * 18 17 16
20 20 C 1.37883 * 119.99904 * 180.02562 * 18 17 16
21 21 N 1.31516 * 119.99948 * 359.97438 * 20 18 17
22 22 Si 1.86791 * 119.99813 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47321 * 59.99921 * 22 20 18
24 24 H 1.48501 * 109.47245 * 179.97438 * 22 20 18
25 25 H 1.48499 * 109.47422 * 299.99776 * 22 20 18
26 26 N 1.30836 * 125.77446 * 179.75131 * 2 1 3
27 27 H 1.09003 * 109.46935 * 270.23466 * 1 2 3
28 28 H 1.09005 * 109.47251 * 30.22594 * 1 2 3
29 29 H 1.08997 * 109.47555 * 150.23306 * 1 2 3
30 30 H 1.07994 * 126.07471 * 0.05289 * 3 2 1
31 31 H 0.97004 * 119.99801 * 179.69082 * 5 4 3
32 32 H 1.08993 * 109.47564 * 270.24936 * 10 9 8
33 33 H 1.08994 * 109.47149 * 30.25880 * 10 9 8
34 34 H 1.09002 * 109.46452 * 150.25316 * 10 9 8
35 35 H 1.08002 * 119.85388 * 179.72883 * 11 9 8
36 36 H 1.08000 * 119.80392 * 180.28326 * 12 11 9
37 37 H 1.08001 * 119.95517 * 180.02562 * 13 12 11
38 38 H 0.96701 * 114.00541 * 89.99233 * 15 14 13
39 39 H 1.09003 * 109.47117 * 209.99681 * 17 16 4
40 40 H 1.09003 * 109.47077 * 330.00003 * 17 16 4
41 41 H 0.97000 * 119.99763 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3239 1.1336 0.0000
4 6 3.6193 0.7146 -0.0033
5 7 4.7496 1.5303 -0.0063
6 6 4.6131 2.8711 -0.0123
7 8 3.5038 3.3693 -0.0155
8 6 5.8092 3.7342 -0.0149
9 6 6.3763 4.1455 -1.2238
10 6 5.7670 3.7075 -2.5308
11 6 7.4967 4.9474 -1.2194
12 6 8.0578 5.3579 -0.0209
13 6 7.5040 4.9639 1.1808
14 6 6.3796 4.1519 1.1952
15 8 5.8347 3.7635 2.3752
16 7 3.6087 -0.6434 0.0027
17 6 4.7857 -1.5156 0.0061
18 6 5.1899 -1.8085 1.4281
19 1 4.6266 -1.3867 2.2473
20 6 6.2794 -2.6141 1.6832
21 7 6.9656 -3.1273 0.6855
22 14 6.7807 -2.9765 3.4457
23 1 5.6618 -3.6529 4.1495
24 1 7.9738 -3.8607 3.4492
25 1 7.1050 -1.7043 4.1397
26 7 2.2718 -1.0615 0.0046
27 1 -0.3633 0.0042 1.0277
28 1 -0.3634 0.8880 -0.5174
29 1 -0.3634 -0.8920 -0.5102
30 1 1.9876 2.1598 0.0008
31 1 5.6345 1.1328 -0.0040
32 1 6.2185 2.7665 -2.8449
33 1 4.6932 3.5706 -2.4033
34 1 5.9487 4.4688 -3.2894
35 1 7.9369 5.2613 -2.1544
36 1 8.9333 5.9902 -0.0268
37 1 7.9469 5.2884 2.1109
38 1 5.1596 4.3671 2.7143
39 1 4.5475 -2.4493 -0.5035
40 1 5.6074 -1.0192 -0.5103
41 1 7.7319 -3.6944 0.8650
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000599145506.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:55
Heat of formation + Delta-G solvation = 20.842480 kcal
Electronic energy + Delta-G solvation = -26077.990798 eV
Core-core repulsion = 22345.746011 eV
Total energy + Delta-G solvation = -3732.244787 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.02308 -40.14948 -38.49883 -37.05933 -34.68639 -33.72410 -32.82035 -32.02106
-30.55462 -29.09376 -28.15845 -27.21238 -25.99847 -24.13199 -22.80592 -22.00773
-21.16750 -19.73044 -19.38072 -18.20690 -17.31048 -16.80612 -16.46554 -16.37087
-15.68267 -15.37721 -14.73564 -14.69040 -14.29309 -13.95019 -13.82611 -13.65304
-13.56111 -12.92973 -12.80603 -12.74180 -12.49085 -12.06216 -12.03796 -11.94140
-11.82941 -11.74509 -11.53725 -11.07245 -10.87833 -10.82269 -10.37438 -10.30180
-9.92791 -9.80028 -9.59934 -9.00433 -8.79791 -8.67921 -7.88968 -7.43955
-6.29832 -4.37850 0.83657 1.03365 2.18802 2.82017 3.10985 3.22556
3.25636 3.30509 3.32757 3.61275 3.81277 3.97227 4.28308 4.54901
4.57566 4.71608 5.03358 5.03696 5.08994 5.30206 5.37365 5.47539
5.50868 5.58762 5.65114 5.93429 6.04559 6.04785 6.09659 6.17221
6.19130 6.24055 6.28662 6.42700 6.52838 6.66435 6.85942 7.05771
7.48467 7.52570 7.60092 7.64693 7.82886 7.89728 8.28144 8.64015
8.73346 9.29550 10.77426
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.009474 B = 0.005261 C = 0.003948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2954.801744 B = 5321.330738 C = 7090.726414
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 C 0.050 3.950
3 C -0.293 4.293
4 C 0.300 3.700
5 N -0.626 5.626
6 C 0.581 3.419
7 O -0.512 6.512
8 C -0.153 4.153
9 C -0.029 4.029
10 C -0.127 4.127
11 C -0.134 4.134
12 C -0.082 4.082
13 C -0.154 4.154
14 C 0.152 3.848
15 O -0.489 6.489
16 N -0.345 5.345
17 C 0.258 3.742
18 C -0.539 4.539
19 H 0.064 0.936
20 C 0.067 3.933
21 N -0.891 5.891
22 Si 0.906 3.094
23 H -0.273 1.273
24 H -0.284 1.284
25 H -0.274 1.274
26 N -0.283 5.283
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.066 0.934
30 H 0.161 0.839
31 H 0.418 0.582
32 H 0.080 0.920
33 H 0.073 0.927
34 H 0.076 0.924
35 H 0.132 0.868
36 H 0.131 0.869
37 H 0.135 0.865
38 H 0.397 0.603
39 H 0.057 0.943
40 H 0.043 0.957
41 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.851 17.519 -3.742 17.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.115 4.115
3 C -0.325 4.325
4 C 0.078 3.922
5 N -0.272 5.272
6 C 0.367 3.633
7 O -0.386 6.386
8 C -0.157 4.157
9 C -0.030 4.030
10 C -0.184 4.184
11 C -0.152 4.152
12 C -0.100 4.100
13 C -0.173 4.173
14 C 0.107 3.893
15 O -0.300 6.300
16 N -0.131 5.131
17 C 0.140 3.860
18 C -0.578 4.578
19 H 0.083 0.917
20 C -0.136 4.136
21 N -0.529 5.529
22 Si 0.733 3.267
23 H -0.199 1.199
24 H -0.209 1.209
25 H -0.199 1.199
26 N -0.108 5.108
27 H 0.087 0.913
28 H 0.088 0.912
29 H 0.084 0.916
30 H 0.178 0.822
31 H 0.255 0.745
32 H 0.099 0.901
33 H 0.092 0.908
34 H 0.095 0.905
35 H 0.150 0.850
36 H 0.149 0.851
37 H 0.153 0.847
38 H 0.254 0.746
39 H 0.075 0.925
40 H 0.061 0.939
41 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 0.790 15.930 -3.843 16.406
hybrid contribution 0.804 0.637 1.167 1.554
sum 1.594 16.567 -2.676 16.858
Atomic orbital electron populations
1.20018 0.87598 1.02302 1.02146 1.22008 0.96507 0.91003 1.02015
1.21243 0.89044 1.00387 1.21828 1.18046 0.87907 0.83347 1.02872
1.42737 1.08445 1.05277 1.70732 1.17848 0.88763 0.80959 0.75749
1.90739 1.25717 1.74049 1.48107 1.20012 0.97928 1.03709 0.94058
1.19819 0.94254 0.95284 0.93662 1.20960 1.01621 1.02337 0.93472
1.20977 0.96092 0.99450 0.98660 1.21159 0.98992 0.98155 0.91730
1.21363 0.97314 0.99265 0.99329 1.18409 0.92935 0.93891 0.84109
1.84799 1.58476 1.52088 1.34681 1.49507 1.06452 1.02055 1.55047
1.19616 0.77804 0.89656 0.98925 1.21302 1.13373 1.31806 0.91314
0.91748 1.24925 0.95633 0.94872 0.98204 1.69908 1.19216 1.32571
1.31178 0.86412 0.78068 0.78518 0.83740 1.19858 1.20899 1.19888
1.77332 0.86177 1.21825 1.25496 0.91328 0.91174 0.91552 0.82199
0.74538 0.90116 0.90819 0.90520 0.85048 0.85120 0.84719 0.74580
0.92523 0.93908 0.92148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16
2 C 0.05 1.02 7.20 -82.46 -0.59 0.42 16
3 C -0.29 -6.15 9.58 -39.78 -0.38 -6.53 16
4 C 0.30 6.57 7.68 -152.74 -1.17 5.40 16
5 N -0.63 -11.90 5.41 -12.30 -0.07 -11.97 16
6 C 0.58 10.02 5.22 -12.49 -0.07 9.96 16
7 O -0.51 -9.75 14.23 5.27 0.08 -9.68 16
8 C -0.15 -2.19 5.64 -104.85 -0.59 -2.78 16
9 C -0.03 -0.35 5.91 -104.23 -0.62 -0.97 16
10 C -0.13 -1.38 9.62 36.01 0.35 -1.03 16
11 C -0.13 -1.28 9.68 -39.63 -0.38 -1.66 16
12 C -0.08 -0.74 10.03 -39.53 -0.40 -1.13 16
13 C -0.15 -1.62 9.98 -39.48 -0.39 -2.01 16
14 C 0.15 2.01 6.72 -38.69 -0.26 1.75 16
15 O -0.49 -6.67 12.95 -18.66 -0.24 -6.92 16
16 N -0.34 -8.31 3.62 -61.44 -0.22 -8.53 16
17 C 0.26 6.63 6.02 -5.19 -0.03 6.59 16
18 C -0.54 -14.96 9.39 -34.44 -0.32 -15.28 16
19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16
20 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
21 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16
22 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16
23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
26 N -0.28 -6.72 12.56 33.64 0.42 -6.29 16
27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
30 H 0.16 3.24 5.82 -52.49 -0.31 2.94 16
31 H 0.42 7.77 7.98 -40.82 -0.33 7.44 16
32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
33 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16
34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16
35 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16
36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16
37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16
38 H 0.40 3.69 9.06 45.56 0.41 4.10 16
39 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16
40 H 0.04 1.07 7.52 -51.93 -0.39 0.68 16
41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 358.04 15.07 5.40 5.40
Total: -1.00 -33.44 358.04 -7.83 -41.27
By element:
Atomic # 1 Polarization: 14.97 SS G_CDS: -4.32 Total: 10.65 kcal
Atomic # 6 Polarization: -1.50 SS G_CDS: -4.58 Total: -6.08 kcal
Atomic # 7 Polarization: -51.84 SS G_CDS: 0.87 Total: -50.97 kcal
Atomic # 8 Polarization: -16.43 SS G_CDS: -0.17 Total: -16.59 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -33.44 -7.83 -41.27 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599145506.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.117 kcal
(2) G-P(sol) polarization free energy of solvation -33.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds