Wall clock time and date at job start Tue Mar 31 2020 11:16:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.39728 * 125.78077 * 2 1
4 4 C 1.36143 * 107.85874 * 180.14535 * 3 2 1
5 5 N 1.39391 * 126.26378 * 179.90252 * 4 3 2
6 6 C 1.34777 * 119.99926 * 359.69831 * 5 4 3
7 7 O 1.21605 * 119.99926 * 359.97438 * 6 5 4
8 8 C 1.47500 * 119.99690 * 179.97438 * 6 5 4
9 9 C 1.39721 * 120.19383 * 90.31720 * 8 6 5
10 10 C 1.50705 * 120.04624 * 359.97438 * 9 8 6
11 11 C 1.37783 * 119.90732 * 180.25127 * 9 8 6
12 12 C 1.38553 * 120.29869 * 359.44576 * 11 9 8
13 13 C 1.38063 * 120.39453 * 0.25687 * 12 11 9
14 14 C 1.38698 * 120.08359 * 0.02562 * 13 12 11
15 15 O 1.35654 * 120.15124 * 179.97438 * 14 13 12
16 16 N 1.35804 * 107.47498 * 359.64572 * 4 3 2
17 17 C 1.46500 * 126.09606 * 180.20270 * 16 4 3
18 18 C 1.50704 * 109.46999 * 90.00210 * 17 16 4
19 19 H 1.07997 * 120.00047 * 359.97438 * 18 17 16
20 20 C 1.37883 * 119.99904 * 180.02562 * 18 17 16
21 21 N 1.31516 * 119.99948 * 359.97438 * 20 18 17
22 22 Si 1.86791 * 119.99813 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47321 * 59.99921 * 22 20 18
24 24 H 1.48501 * 109.47245 * 179.97438 * 22 20 18
25 25 H 1.48499 * 109.47422 * 299.99776 * 22 20 18
26 26 N 1.30836 * 125.77446 * 179.75131 * 2 1 3
27 27 H 1.09003 * 109.46935 * 270.23466 * 1 2 3
28 28 H 1.09005 * 109.47251 * 30.22594 * 1 2 3
29 29 H 1.08997 * 109.47555 * 150.23306 * 1 2 3
30 30 H 1.07994 * 126.07471 * 0.05289 * 3 2 1
31 31 H 0.97004 * 119.99801 * 179.69082 * 5 4 3
32 32 H 1.08993 * 109.47564 * 270.24936 * 10 9 8
33 33 H 1.08994 * 109.47149 * 30.25880 * 10 9 8
34 34 H 1.09002 * 109.46452 * 150.25316 * 10 9 8
35 35 H 1.08002 * 119.85388 * 179.72883 * 11 9 8
36 36 H 1.08000 * 119.80392 * 180.28326 * 12 11 9
37 37 H 1.08001 * 119.95517 * 180.02562 * 13 12 11
38 38 H 0.96701 * 114.00541 * 89.99233 * 15 14 13
39 39 H 1.09003 * 109.47117 * 209.99681 * 17 16 4
40 40 H 1.09003 * 109.47077 * 330.00003 * 17 16 4
41 41 H 0.97000 * 119.99763 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3239 1.1336 0.0000
4 6 3.6193 0.7146 -0.0033
5 7 4.7496 1.5303 -0.0063
6 6 4.6131 2.8711 -0.0123
7 8 3.5038 3.3693 -0.0155
8 6 5.8092 3.7342 -0.0149
9 6 6.3763 4.1455 -1.2238
10 6 5.7670 3.7075 -2.5308
11 6 7.4967 4.9474 -1.2194
12 6 8.0578 5.3579 -0.0209
13 6 7.5040 4.9639 1.1808
14 6 6.3796 4.1519 1.1952
15 8 5.8347 3.7635 2.3752
16 7 3.6087 -0.6434 0.0027
17 6 4.7857 -1.5156 0.0061
18 6 5.1899 -1.8085 1.4281
19 1 4.6266 -1.3867 2.2473
20 6 6.2794 -2.6141 1.6832
21 7 6.9656 -3.1273 0.6855
22 14 6.7807 -2.9765 3.4457
23 1 5.6618 -3.6529 4.1495
24 1 7.9738 -3.8607 3.4492
25 1 7.1050 -1.7043 4.1397
26 7 2.2718 -1.0615 0.0046
27 1 -0.3633 0.0042 1.0277
28 1 -0.3634 0.8880 -0.5174
29 1 -0.3634 -0.8920 -0.5102
30 1 1.9876 2.1598 0.0008
31 1 5.6345 1.1328 -0.0040
32 1 6.2185 2.7665 -2.8449
33 1 4.6932 3.5706 -2.4033
34 1 5.9487 4.4688 -3.2894
35 1 7.9369 5.2613 -2.1544
36 1 8.9333 5.9902 -0.0268
37 1 7.9469 5.2884 2.1109
38 1 5.1596 4.3671 2.7143
39 1 4.5475 -2.4493 -0.5035
40 1 5.6074 -1.0192 -0.5103
41 1 7.7319 -3.6944 0.8650
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000599145506.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:54
Heat of formation + Delta-G solvation = -1.822676 kcal
Electronic energy + Delta-G solvation = -26078.973633 eV
Core-core repulsion = 22345.746011 eV
Total energy + Delta-G solvation = -3733.227622 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.53032 -41.40049 -39.76755 -37.98516 -36.30811 -35.64011 -33.89144 -33.64070
-31.61297 -30.71379 -29.71758 -28.09500 -27.82972 -25.32810 -24.66343 -23.00323
-22.40404 -21.33577 -20.82374 -19.19278 -18.93979 -18.60942 -18.05449 -17.43337
-17.00295 -16.55279 -16.35120 -16.19922 -15.78720 -15.22889 -15.15808 -14.65749
-14.58906 -14.47672 -14.39136 -14.07848 -13.71300 -13.59261 -13.42891 -13.16051
-12.95372 -12.86270 -12.78756 -12.74249 -12.63179 -12.32227 -12.01269 -11.87154
-11.74294 -11.45017 -11.05471 -10.79506 -9.93045 -9.67381 -9.63386 -9.14037
-8.39888 -6.57228 -0.05869 0.20893 0.65729 1.28070 1.34090 1.35231
1.44780 1.54564 1.99373 2.13703 2.31724 2.52064 2.90331 3.08893
3.33194 3.75020 3.78951 3.96413 4.18978 4.25285 4.30775 4.53877
4.54855 4.62710 4.63166 4.70206 4.77258 4.80801 4.83171 4.88490
4.92081 5.11154 5.17167 5.19765 5.23642 5.33185 5.42331 5.47022
5.72839 5.78026 5.92528 6.05024 6.17664 6.51576 6.64142 6.80275
6.96921 7.14445 8.66682
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.009474 B = 0.005261 C = 0.003948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2954.801744 B = 5321.330738 C = 7090.726414
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.060 3.940
3 C -0.302 4.302
4 C 0.296 3.704
5 N -0.629 5.629
6 C 0.587 3.413
7 O -0.534 6.534
8 C -0.184 4.184
9 C -0.039 4.039
10 C -0.126 4.126
11 C -0.127 4.127
12 C -0.069 4.069
13 C -0.155 4.155
14 C 0.133 3.867
15 O -0.511 6.511
16 N -0.368 5.368
17 C 0.275 3.725
18 C -0.558 4.558
19 H 0.045 0.955
20 C 0.028 3.972
21 N -0.913 5.913
22 Si 0.968 3.032
23 H -0.275 1.275
24 H -0.268 1.268
25 H -0.270 1.270
26 N -0.326 5.326
27 H 0.085 0.915
28 H 0.097 0.903
29 H 0.076 0.924
30 H 0.168 0.832
31 H 0.417 0.583
32 H 0.079 0.921
33 H 0.046 0.954
34 H 0.106 0.894
35 H 0.166 0.834
36 H 0.171 0.829
37 H 0.155 0.845
38 H 0.409 0.591
39 H 0.030 0.970
40 H 0.043 0.957
41 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.183 19.553 -3.550 19.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.106 4.106
3 C -0.334 4.334
4 C 0.074 3.926
5 N -0.275 5.275
6 C 0.375 3.625
7 O -0.410 6.410
8 C -0.187 4.187
9 C -0.040 4.040
10 C -0.182 4.182
11 C -0.145 4.145
12 C -0.086 4.086
13 C -0.173 4.173
14 C 0.088 3.912
15 O -0.325 6.325
16 N -0.154 5.154
17 C 0.156 3.844
18 C -0.596 4.596
19 H 0.063 0.937
20 C -0.174 4.174
21 N -0.551 5.551
22 Si 0.791 3.209
23 H -0.200 1.200
24 H -0.192 1.192
25 H -0.195 1.195
26 N -0.151 5.151
27 H 0.104 0.896
28 H 0.115 0.885
29 H 0.095 0.905
30 H 0.185 0.815
31 H 0.253 0.747
32 H 0.097 0.903
33 H 0.065 0.935
34 H 0.125 0.875
35 H 0.183 0.817
36 H 0.188 0.812
37 H 0.173 0.827
38 H 0.269 0.731
39 H 0.048 0.952
40 H 0.061 0.939
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.120 17.990 -3.660 18.481
hybrid contribution 0.377 0.123 1.060 1.132
sum 2.497 18.113 -2.600 18.468
Atomic orbital electron populations
1.20239 0.83654 1.04178 1.03789 1.22894 0.98826 0.89844 0.98987
1.21456 0.88869 1.00867 1.22221 1.18458 0.89349 0.82892 1.01924
1.42957 1.07594 1.05792 1.71114 1.18438 0.89708 0.80284 0.74036
1.90689 1.27154 1.74169 1.48948 1.19969 0.97982 1.04940 0.95833
1.20040 0.95232 0.95858 0.92897 1.20971 0.99765 1.03360 0.94122
1.21385 0.94716 0.97870 1.00532 1.21657 0.99294 0.97034 0.90649
1.21645 0.96150 0.98411 1.01125 1.18692 0.94081 0.95069 0.83395
1.84752 1.59203 1.53361 1.35149 1.49309 1.06319 1.02644 1.57117
1.19187 0.78566 0.88912 0.97748 1.21369 1.13930 1.32679 0.91605
0.93673 1.25685 0.95270 0.94268 1.02194 1.69979 1.19474 1.32640
1.32982 0.85464 0.78016 0.78571 0.78827 1.19995 1.19227 1.19454
1.77283 0.86294 1.23616 1.27906 0.89632 0.88481 0.90488 0.81466
0.74661 0.90265 0.93495 0.87501 0.81672 0.81172 0.82717 0.73105
0.95176 0.93944 0.91553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.72 10.44 71.23 0.74 -0.98 16
2 C 0.06 2.48 7.20 43.07 0.31 2.79 16
3 C -0.30 -12.96 9.58 22.14 0.21 -12.75 16
4 C 0.30 13.49 7.68 131.18 1.01 14.50 16
5 N -0.63 -25.07 5.41 -311.07 -1.68 -26.76 16
6 C 0.59 21.00 5.22 86.69 0.45 21.46 16
7 O -0.53 -21.02 14.23 -4.05 -0.06 -21.08 16
8 C -0.18 -5.27 5.64 -20.01 -0.11 -5.38 16
9 C -0.04 -0.89 5.91 -19.61 -0.12 -1.01 16
10 C -0.13 -2.64 9.62 71.24 0.68 -1.95 16
11 C -0.13 -1.99 9.68 22.24 0.22 -1.77 16
12 C -0.07 -0.96 10.03 22.30 0.22 -0.73 16
13 C -0.16 -2.88 9.98 22.34 0.22 -2.65 16
14 C 0.13 3.46 6.72 22.85 0.15 3.61 16
15 O -0.51 -14.15 12.95 -89.69 -1.16 -15.32 16
16 N -0.37 -18.58 3.62 -348.30 -1.26 -19.84 16
17 C 0.27 14.86 6.02 85.63 0.52 15.38 16
18 C -0.56 -32.03 9.39 25.60 0.24 -31.79 16
19 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16
20 C 0.03 1.53 5.46 84.66 0.46 1.99 16
21 N -0.91 -51.62 13.29 21.45 0.28 -51.34 16
22 Si 0.97 43.91 29.54 68.60 2.03 45.94 16
23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
26 N -0.33 -15.99 12.56 -47.48 -0.60 -16.59 16
27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
28 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16
29 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16
30 H 0.17 6.88 5.82 -2.91 -0.02 6.87 16
31 H 0.42 16.44 7.98 -92.71 -0.74 15.70 16
32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
33 H 0.05 1.22 7.09 -2.39 -0.02 1.21 16
34 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16
35 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16
36 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16
37 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16
38 H 0.41 7.89 9.06 -74.06 -0.67 7.21 16
39 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16
40 H 0.04 2.25 7.52 -2.39 -0.02 2.23 16
41 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16
Total: -1.00 -74.84 358.04 2.44 -72.40
By element:
Atomic # 1 Polarization: 32.20 SS G_CDS: -0.32 Total: 31.88 kcal
Atomic # 6 Polarization: -4.51 SS G_CDS: 5.22 Total: 0.71 kcal
Atomic # 7 Polarization: -111.27 SS G_CDS: -3.26 Total: -114.53 kcal
Atomic # 8 Polarization: -35.18 SS G_CDS: -1.22 Total: -36.39 kcal
Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal
Total: -74.84 2.44 -72.40 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599145506.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.575 kcal
(2) G-P(sol) polarization free energy of solvation -74.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds