Wall clock time and date at job start Tue Mar 31 2020 10:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99831 * 293.79913 * 10 9 7 12 12 C 1.53048 * 109.36410 * 176.81063 * 11 10 9 13 13 N 1.46959 * 109.36409 * 58.40073 * 12 11 10 14 14 C 1.38995 * 111.00211 * 176.81394 * 13 12 11 15 15 C 1.39150 * 119.70268 * 303.79877 * 14 13 12 16 16 C 1.38297 * 119.09473 * 179.97438 * 15 14 13 17 17 C 1.38884 * 118.50831 * 0.02562 * 16 15 14 18 18 C 1.38023 * 119.32744 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.56862 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.47054 * 90.00223 * 19 18 17 21 21 F 1.39894 * 109.46873 * 209.99841 * 19 18 17 22 22 F 1.39896 * 109.47152 * 330.00092 * 19 18 17 23 23 N 1.31970 * 120.85905 * 359.72776 * 18 17 16 24 24 C 1.46959 * 110.88119 * 300.67921 * 13 12 11 25 25 C 1.46955 * 110.99744 * 169.99905 * 10 9 7 26 26 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 28 28 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 29 29 H 1.08995 * 109.48972 * 296.77903 * 11 10 9 30 30 H 1.08998 * 109.48999 * 56.84502 * 11 10 9 31 31 H 1.08999 * 109.48951 * 298.43451 * 12 11 10 32 32 H 1.09000 * 109.50530 * 178.37669 * 12 11 10 33 33 H 1.08002 * 120.44897 * 359.97438 * 15 14 13 34 34 H 1.07998 * 120.74510 * 180.02562 * 16 15 14 35 35 H 1.08003 * 120.33376 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.48972 * 299.35239 * 24 13 12 37 37 H 1.08993 * 109.50763 * 179.29948 * 24 13 12 38 38 H 1.08994 * 109.48867 * 303.15267 * 25 10 9 39 39 H 1.08999 * 109.48971 * 63.22178 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9687 -3.6563 -1.2559 12 6 4.0042 -4.7810 -1.1842 13 7 3.3194 -6.0593 -0.9460 14 6 4.2227 -7.1158 -0.9459 15 6 5.0414 -7.3229 -2.0518 16 6 5.9359 -8.3776 -2.0381 17 6 5.9817 -9.1934 -0.9151 18 6 5.1403 -8.9298 0.1468 19 6 5.1858 -9.8112 1.3683 20 9 6.1170 -9.2992 2.2784 21 9 3.9212 -9.8464 1.9654 22 9 5.5617 -11.1061 0.9953 23 7 4.3004 -7.9125 0.1086 24 6 2.5564 -6.0188 0.3093 25 6 1.5209 -4.8940 0.2377 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 2.2896 -3.8397 -2.0884 30 1 3.4766 -2.7032 -1.4036 31 1 4.6997 -4.5835 -0.3686 32 1 4.5520 -4.8318 -2.1252 33 1 4.9792 -6.6690 -2.9091 34 1 6.5843 -8.5626 -2.8818 35 1 6.6688 -10.0256 -0.8731 36 1 3.2355 -5.8354 1.1419 37 1 2.0486 -6.9717 0.4575 38 1 0.9734 -4.8433 1.1788 39 1 0.8253 -5.0915 -0.5779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:27 Heat of formation + Delta-G solvation = -88.269155 kcal Electronic energy + Delta-G solvation = -26266.038568 eV Core-core repulsion = 21987.205605 eV Total energy + Delta-G solvation = -4278.832963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.34813 -47.90596 -47.77002 -41.02298 -38.58856 -35.40335 -33.15942 -32.67383 -31.10655 -30.64522 -27.94495 -26.77186 -25.27233 -23.71614 -22.92683 -22.17021 -21.46838 -19.48764 -18.82465 -18.72554 -18.57102 -17.08932 -16.48397 -16.26306 -16.09554 -15.15041 -14.81306 -14.71329 -14.59580 -14.37118 -14.25428 -14.20131 -14.05363 -13.96237 -13.94219 -13.70749 -13.53985 -13.09912 -12.95597 -12.26556 -12.16305 -11.82619 -11.32802 -11.01805 -10.86848 -10.83697 -10.59560 -10.50531 -10.34436 -10.11312 -9.90299 -9.81360 -9.22308 -8.48113 -8.30294 -7.33455 -6.06479 -4.08493 0.47504 0.87448 2.22883 3.08204 3.28512 3.28852 3.35653 3.39504 3.52802 3.80313 4.18807 4.38510 4.40920 4.63420 4.69269 4.73749 4.85589 4.99485 5.17466 5.29270 5.36433 5.42940 5.58878 5.64781 5.72583 5.76236 5.86598 5.97790 6.13049 6.35030 6.46830 6.50044 6.65619 7.02532 7.22929 7.28741 7.52287 7.73988 8.01660 8.12089 8.47537 8.98639 9.56051 11.04338 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002848 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.144135 B = 9828.695079 C =10195.995059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.066 3.934 12 C 0.062 3.938 13 N -0.474 5.474 14 C 0.330 3.670 15 C -0.158 4.158 16 C -0.051 4.051 17 C -0.161 4.161 18 C 0.065 3.935 19 C 0.523 3.477 20 F -0.171 7.171 21 F -0.164 7.164 22 F -0.174 7.174 23 N -0.485 5.485 24 C 0.071 3.929 25 C 0.052 3.948 26 H 0.262 0.738 27 H -0.007 1.007 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -20.023 -3.749 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.064 4.064 13 N -0.191 5.191 14 C 0.097 3.903 15 C -0.181 4.181 16 C -0.077 4.077 17 C -0.183 4.183 18 C -0.075 4.075 19 C 0.467 3.533 20 F -0.153 7.153 21 F -0.145 7.145 22 F -0.155 7.155 23 N -0.199 5.199 24 C -0.056 4.056 25 C -0.077 4.077 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.725 -19.656 -2.979 23.080 hybrid contribution 0.675 0.541 -0.606 1.056 sum 12.400 -19.114 -3.585 23.064 Atomic orbital electron populations 1.69957 1.06079 1.26852 1.50791 1.24991 0.94862 0.99336 0.95373 0.86501 0.79823 0.83098 0.78023 1.20724 1.21238 1.19770 1.21137 0.93434 0.89914 1.50343 0.91893 1.19717 0.89973 0.87099 0.96317 1.62323 1.28415 1.02915 1.32756 1.22034 0.95356 0.97083 0.91816 1.22529 0.96606 0.85919 1.01326 1.59384 1.21085 1.02854 1.35756 1.19943 0.89275 0.92610 0.88495 1.21862 0.96924 0.99993 0.99310 1.21446 0.96404 0.92438 0.97436 1.21643 1.00638 1.02052 0.93970 1.20628 0.96987 0.95744 0.94098 1.17928 0.74369 0.78122 0.82871 1.93241 1.66167 1.86856 1.69012 1.93240 1.40024 1.96293 1.84938 1.93195 1.91414 1.39464 1.91419 1.67116 1.21109 1.05219 1.26449 1.22152 0.95953 0.99391 0.88111 1.22176 0.94724 0.89677 1.01113 0.92864 0.98913 0.95021 0.94841 0.88658 0.92619 0.90082 0.83419 0.83430 0.83749 0.92247 0.89908 0.90235 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.95 8.47 -34.44 -0.29 -14.24 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.94 4.72 -4.97 -0.02 4.92 16 10 N -0.54 -11.32 4.70 -235.91 -1.11 -12.43 16 11 C 0.07 1.20 5.43 -3.77 -0.02 1.18 16 12 C 0.06 0.90 5.37 -3.77 -0.02 0.88 16 13 N -0.47 -7.00 4.73 -173.04 -0.82 -7.82 16 14 C 0.33 4.38 6.40 -155.02 -0.99 3.39 16 15 C -0.16 -1.57 9.21 -39.22 -0.36 -1.94 16 16 C -0.05 -0.40 10.17 -39.32 -0.40 -0.80 16 17 C -0.16 -1.44 9.43 -39.42 -0.37 -1.81 16 18 C 0.07 0.77 6.29 -82.61 -0.52 0.25 16 19 C 0.52 6.01 3.43 36.01 0.12 6.13 16 20 F -0.17 -2.05 17.30 2.25 0.04 -2.01 16 21 F -0.16 -2.13 17.04 2.25 0.04 -2.10 16 22 F -0.17 -1.74 16.43 2.25 0.04 -1.70 16 23 N -0.48 -6.78 8.31 -8.67 -0.07 -6.85 16 24 C 0.07 1.13 4.79 -3.76 -0.02 1.11 16 25 C 0.05 0.94 5.61 -3.76 -0.02 0.92 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 28 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.83 6.79 -51.93 -0.35 1.48 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.93 6.79 -51.93 -0.35 0.58 16 33 H 0.15 1.20 7.18 -52.49 -0.38 0.82 16 34 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 0.92 7.59 -52.48 -0.40 0.52 16 36 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 37 H 0.08 1.27 7.83 -51.93 -0.41 0.87 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -30.35 333.79 -8.92 -39.27 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -4.76 Total: -3.46 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.01 Total: 1.46 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -1.26 Total: -52.69 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.35 -8.92 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.002 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds