Wall clock time and date at job start Tue Mar 31 2020 10:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48503 * 109.46743 * 239.99543 * 3 2 1 5 5 H 1.48498 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47290 * 119.99844 * 3 2 1 7 7 C 1.37875 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46239 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31471 * 181.37024 * 10 9 7 12 12 N 1.46930 * 108.77452 * 305.36455 * 11 10 9 13 13 C 1.34766 * 120.63035 * 233.58438 * 12 11 10 14 14 O 1.21629 * 120.00542 * 5.90801 * 13 12 11 15 15 C 1.47216 * 119.99777 * 185.90357 * 13 12 11 16 16 C 1.37960 * 126.81800 * 37.42430 * 15 13 12 17 17 N 1.34138 * 107.94347 * 179.97438 * 16 15 13 18 18 H 0.97004 * 125.13547 * 180.02562 * 17 16 15 19 19 N 1.39765 * 109.72129 * 359.74800 * 17 16 15 20 20 C 1.31584 * 109.05556 * 0.43013 * 19 17 16 21 21 C 1.47659 * 126.54417 * 179.85035 * 20 19 17 22 22 C 1.36010 * 125.93777 * 324.71466 * 21 20 19 23 23 C 1.40899 * 106.73798 * 180.02562 * 22 21 20 24 24 C 1.34756 * 107.03733 * 359.97438 * 23 22 21 25 25 O 1.34298 * 108.68637 * 0.02562 * 24 23 22 26 26 C 1.46925 * 118.73612 * 53.86106 * 12 11 10 27 27 C 1.53041 * 109.44711 * 300.05577 * 9 7 2 28 28 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46103 * 60.01714 * 9 7 2 30 30 H 1.09005 * 109.49216 * 61.42011 * 10 9 7 31 31 H 1.09000 * 109.50216 * 301.32419 * 10 9 7 32 32 H 1.08999 * 109.58639 * 185.58286 * 11 10 9 33 33 H 1.08995 * 109.70133 * 65.22136 * 11 10 9 34 34 H 1.08002 * 126.02608 * 359.97099 * 16 15 13 35 35 H 1.08000 * 126.63171 * 359.97438 * 22 21 20 36 36 H 1.07996 * 126.48290 * 180.02562 * 23 22 21 37 37 H 1.08004 * 125.65799 * 180.02562 * 24 23 22 38 38 H 1.09006 * 109.58402 * 65.92641 * 26 12 11 39 39 H 1.08994 * 109.58951 * 186.34622 * 26 12 11 40 40 H 1.08999 * 109.49805 * 298.57367 * 27 9 7 41 41 H 1.08997 * 109.49886 * 58.67220 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2458 -3.6621 0.0005 11 6 1.4768 -4.9866 -0.0340 12 7 0.5226 -5.0087 1.0830 13 6 0.5118 -6.0348 1.9567 14 8 1.3645 -6.8996 1.8898 15 6 -0.5319 -6.1088 2.9923 16 6 -1.8588 -5.7567 2.8554 17 7 -2.4678 -5.9758 4.0303 18 1 -3.4067 -5.8125 4.2115 19 7 -1.5465 -6.4807 4.9521 20 6 -0.3676 -6.5726 4.3750 21 6 0.8810 -7.0559 4.9977 22 6 1.2538 -6.8643 6.2916 23 6 2.5063 -7.4899 6.4499 24 6 2.8327 -8.0272 5.2580 25 8 1.8488 -7.7630 4.3830 26 6 -0.4238 -3.8939 1.2258 27 6 0.3699 -2.5788 1.2493 28 1 -0.4850 0.8400 -0.0004 29 1 0.6251 -2.5570 -0.8899 30 1 2.8558 -3.6190 0.9029 31 1 2.8882 -3.5915 -0.8772 32 1 2.1753 -5.8174 0.0657 33 1 0.9374 -5.0738 -0.9771 34 1 -2.3249 -5.3724 1.9602 35 1 0.6977 -6.3344 7.0508 36 1 3.0934 -7.5317 7.3554 37 1 3.7358 -8.5789 5.0421 38 1 -1.1152 -3.8914 0.3832 39 1 -0.9797 -4.0035 2.1569 40 1 0.9973 -2.5457 2.1400 41 1 -0.3226 -1.7372 1.2601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:44 Heat of formation + Delta-G solvation = 37.754785 kcal Electronic energy + Delta-G solvation = -26315.108750 eV Core-core repulsion = 22583.597336 eV Total energy + Delta-G solvation = -3731.511415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44980 -42.22394 -40.55287 -38.22425 -35.31113 -34.20351 -33.35019 -33.31397 -31.93929 -30.89989 -29.87951 -28.00348 -25.31307 -24.26680 -23.86123 -23.35959 -22.51380 -21.40103 -20.88445 -20.28335 -18.68785 -18.43762 -18.14299 -17.60062 -17.01064 -16.68995 -16.46317 -16.19371 -15.91119 -15.45023 -14.95356 -14.86900 -14.72592 -14.41654 -14.15002 -13.81208 -13.74995 -13.60940 -13.35770 -13.27677 -13.00324 -12.79131 -12.47721 -12.24457 -12.11055 -11.91111 -11.46228 -11.28443 -10.98334 -10.97069 -10.82356 -10.72940 -10.37511 -9.92620 -9.47650 -9.21345 -8.06322 -6.18410 0.11040 0.52751 1.19175 1.42983 1.43863 1.44109 1.50877 1.76479 1.99532 2.16398 2.44522 2.47091 3.20316 3.34959 3.55226 3.88628 4.08125 4.13012 4.15992 4.19222 4.30756 4.35976 4.44479 4.50555 4.61340 4.74132 4.75595 4.91206 4.93524 5.00165 5.01587 5.15033 5.22384 5.29308 5.45775 5.55598 5.61448 5.69442 6.02315 6.02407 6.15025 6.22970 6.34638 6.42513 6.57495 6.89782 7.27697 7.48609 8.96765 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.003722 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.546479 B = 7521.953961 C = 7886.260615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.043 0.957 9 C 0.047 3.953 10 C -0.114 4.114 11 C 0.121 3.879 12 N -0.599 5.599 13 C 0.584 3.416 14 O -0.573 6.573 15 C -0.301 4.301 16 C 0.137 3.863 17 N -0.435 5.435 18 H 0.467 0.533 19 N -0.277 5.277 20 C 0.174 3.826 21 C 0.013 3.987 22 C -0.169 4.169 23 C -0.222 4.222 24 C -0.029 4.029 25 O -0.166 6.166 26 C 0.108 3.892 27 C -0.114 4.114 28 H 0.262 0.738 29 H 0.011 0.989 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.239 0.761 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.015 0.985 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -12.914 9.034 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.152 4.152 11 C -0.002 4.002 12 N -0.331 5.331 13 C 0.374 3.626 14 O -0.454 6.454 15 C -0.316 4.316 16 C -0.014 4.014 17 N -0.145 5.145 18 H 0.317 0.683 19 N -0.102 5.102 20 C 0.007 3.993 21 C -0.039 4.039 22 C -0.191 4.191 23 C -0.241 4.241 24 C -0.098 4.098 25 O -0.060 6.060 26 C -0.013 4.013 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.181 0.819 36 H 0.201 0.799 37 H 0.255 0.745 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.034 0.966 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.913 -13.492 9.730 17.655 hybrid contribution 0.712 1.490 -0.588 1.753 sum -5.200 -12.002 9.143 15.959 Atomic orbital electron populations 1.69906 1.06591 1.27138 1.51150 1.25553 0.95714 1.01627 0.94843 0.85832 0.78649 0.79982 0.78476 1.19961 1.20617 1.20442 1.21528 0.92824 0.92486 1.50720 0.93846 1.18602 0.93032 0.91613 0.93902 1.21856 0.98407 0.94719 1.00231 1.21581 0.91955 0.97983 0.88635 1.48065 1.36246 1.20852 1.27936 1.17495 0.83839 0.81071 0.80232 1.90734 1.40310 1.41122 1.73200 1.21290 0.95616 1.19503 0.95226 1.23599 0.91428 0.94098 0.92312 1.45925 1.12337 1.49390 1.06820 0.68300 1.77286 0.97379 1.20582 1.14928 1.20264 0.90191 0.97706 0.91160 1.18977 0.89924 1.03505 0.91515 1.22113 0.98260 1.03894 0.94785 1.22126 0.97672 1.03854 1.00432 1.25099 0.93686 1.02899 0.88094 1.84307 1.25968 1.56102 1.39651 1.22252 0.91385 0.85004 1.02708 1.21852 0.99328 0.96485 0.97606 0.92889 0.97051 0.94843 0.91735 0.90450 0.90267 0.75055 0.81919 0.79945 0.74491 0.89801 0.88680 0.96592 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.97 11.30 21.45 0.24 -48.73 16 2 C 0.02 1.16 5.30 84.66 0.45 1.61 16 3 Si 0.94 42.60 29.54 68.60 2.03 44.62 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -28.98 8.56 25.60 0.22 -28.76 16 8 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 9 C 0.05 2.23 2.06 -11.51 -0.02 2.21 16 10 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 11 C 0.12 4.35 6.44 86.36 0.56 4.91 16 12 N -0.60 -21.13 2.97 -822.18 -2.44 -23.57 16 13 C 0.58 21.59 7.53 86.60 0.65 22.24 16 14 O -0.57 -24.73 14.74 12.80 0.19 -24.54 16 15 C -0.30 -9.30 5.50 -18.75 -0.10 -9.40 16 16 C 0.14 2.75 9.59 84.27 0.81 3.55 16 17 N -0.44 -7.71 7.20 -56.44 -0.41 -8.11 16 18 H 0.47 3.90 8.96 -213.53 -1.91 1.98 16 19 N -0.28 -7.36 12.67 -44.77 -0.57 -7.92 16 20 C 0.17 5.55 7.29 43.90 0.32 5.87 16 21 C 0.01 0.42 7.04 24.24 0.17 0.59 16 22 C -0.17 -4.60 10.85 22.40 0.24 -4.36 16 23 C -0.22 -4.98 10.89 22.12 0.24 -4.74 16 24 C -0.03 -0.70 12.08 67.02 0.81 0.11 16 25 O -0.17 -5.69 9.01 10.50 0.09 -5.59 16 26 C 0.11 3.54 5.42 86.51 0.47 4.01 16 27 C -0.11 -4.99 5.17 30.82 0.16 -4.83 16 28 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 2.84 7.00 -2.39 -0.02 2.83 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.23 2.77 7.09 -2.91 -0.02 2.75 16 35 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.24 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.10 2.61 4.64 -2.39 -0.01 2.60 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 3.97 6.03 -2.39 -0.01 3.95 16 Total: -1.00 -74.23 340.56 3.44 -70.79 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.84 Total: 14.63 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.13 Total: -11.58 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.17 Total: -88.33 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: 0.28 Total: -30.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.23 3.44 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.546 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds