Wall clock time and date at job start Tue Mar 31 2020 10:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47231 * 270.00321 * 3 2 1 5 5 H 1.48503 * 109.46688 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.47014 * 150.00111 * 3 2 1 7 7 C 1.37871 * 120.00699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99537 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49529 * 59.93718 * 9 7 2 11 11 C 1.53040 * 109.49681 * 179.97438 * 9 7 2 12 12 C 1.53041 * 109.53867 * 181.34823 * 11 9 7 13 13 C 1.53192 * 109.31144 * 298.63703 * 12 11 9 14 14 N 1.46931 * 108.77524 * 54.63629 * 13 12 11 15 15 C 1.34778 * 120.62907 * 126.36618 * 14 13 12 16 16 O 1.21633 * 119.99570 * 185.50210 * 15 14 13 17 17 C 1.47205 * 120.00036 * 5.50487 * 15 14 13 18 18 C 1.37969 * 126.81949 * 40.66790 * 17 15 14 19 19 N 1.34146 * 107.93971 * 180.25993 * 18 17 15 20 20 H 0.96993 * 125.13152 * 179.74249 * 19 18 17 21 21 N 1.39772 * 109.72376 * 359.74273 * 19 18 17 22 22 C 1.31589 * 109.05015 * 359.97438 * 21 19 18 23 23 C 1.47659 * 126.53840 * 179.97438 * 22 21 19 24 24 C 1.36014 * 125.93839 * 325.04234 * 23 22 21 25 25 C 1.40905 * 106.74025 * 179.77299 * 24 23 22 26 26 C 1.34755 * 107.03573 * 0.37788 * 25 24 23 27 27 O 1.34307 * 108.68371 * 359.61819 * 26 25 24 28 28 C 1.46928 * 118.73661 * 306.64013 * 14 13 12 29 29 H 0.97001 * 120.00173 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.45578 * 61.32886 * 11 9 7 31 31 H 1.09002 * 109.46018 * 301.37545 * 11 9 7 32 32 H 1.08990 * 109.49747 * 178.68140 * 12 11 9 33 33 H 1.09000 * 109.49485 * 58.58997 * 12 11 9 34 34 H 1.08990 * 109.58783 * 294.84480 * 13 12 11 35 35 H 1.09000 * 109.58331 * 174.41652 * 13 12 11 36 36 H 1.07994 * 126.02802 * 0.02562 * 18 17 15 37 37 H 1.08002 * 126.63200 * 0.02562 * 24 23 22 38 38 H 1.07993 * 126.48335 * 180.24416 * 25 24 23 39 39 H 1.07995 * 125.65575 * 179.89094 * 26 25 24 40 40 H 1.08991 * 109.58380 * 173.14937 * 28 14 13 41 41 H 1.09008 * 109.58477 * 293.57010 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6231 -2.5566 -0.8896 11 6 2.2452 -3.6628 -0.0018 12 6 1.4812 -4.9885 -0.0358 13 6 0.6064 -5.1012 1.2167 14 7 -0.2523 -3.9120 1.3024 15 6 -1.5887 -4.0373 1.4243 16 8 -2.2974 -3.0493 1.3937 17 6 -2.1905 -5.3699 1.5946 18 6 -1.7080 -6.4017 2.3731 19 7 -2.5463 -7.4414 2.2470 20 1 -2.4411 -8.2997 2.6864 21 7 -3.5941 -7.1008 1.3869 22 6 -3.4249 -5.8633 0.9728 23 6 -4.3051 -5.1162 0.0523 24 6 -4.9888 -5.6406 -1.0002 25 6 -5.6988 -4.5777 -1.5931 26 6 -5.4101 -3.4673 -0.8863 27 8 -4.5705 -3.7968 0.1088 28 6 0.3731 -2.5836 1.2466 29 1 -0.4850 0.8400 -0.0004 30 1 2.8566 -3.6189 0.8995 31 1 2.8872 -3.5909 -0.8798 32 1 2.1899 -5.8161 -0.0603 33 1 0.8508 -5.0223 -0.9243 34 1 1.2404 -5.1587 2.1013 35 1 -0.0135 -5.9954 1.1501 36 1 -0.8114 -6.3780 2.9745 37 1 -4.9906 -6.6730 -1.3174 38 1 -6.3493 -4.6406 -2.4528 39 1 -5.7940 -2.4775 -1.0844 40 1 -0.4005 -1.8173 1.1999 41 1 0.9878 -2.4316 2.1339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:47 Heat of formation + Delta-G solvation = 59.302908 kcal Electronic energy + Delta-G solvation = -26596.710022 eV Core-core repulsion = 22866.133004 eV Total energy + Delta-G solvation = -3730.577018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28001 -41.07889 -38.91320 -36.48441 -33.40699 -33.04399 -32.25225 -31.77542 -30.50512 -29.42420 -28.76192 -25.06140 -24.89328 -23.04898 -22.25606 -21.80328 -21.33293 -20.00977 -19.57476 -18.82983 -17.39265 -17.06839 -16.46241 -15.97624 -15.71482 -15.07606 -14.83476 -14.75289 -14.39126 -14.12500 -13.82720 -13.48237 -13.12232 -12.72377 -12.64512 -12.55676 -12.50758 -12.26019 -12.00254 -11.85101 -11.11806 -10.96066 -10.88220 -10.47112 -10.40490 -10.20494 -10.15898 -9.84110 -9.69567 -9.28150 -9.08837 -8.88799 -8.71190 -8.38534 -8.10594 -7.64094 -5.94952 -4.04357 1.26109 1.65009 2.27501 2.50221 2.92928 3.28734 3.32944 3.40485 3.42531 3.55061 3.97024 4.41691 4.46453 4.68106 5.03776 5.14791 5.16743 5.29401 5.33925 5.36678 5.43592 5.54666 5.69609 5.81875 5.97910 5.99349 6.09889 6.20725 6.29310 6.34078 6.59641 6.64328 6.72537 6.89376 6.94144 7.01953 7.19312 7.23336 7.37615 7.45027 7.70086 7.93484 8.05632 8.34459 8.43735 8.97704 9.03986 9.61139 11.09919 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.004576 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.073903 B = 6117.752795 C = 7451.584150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.104 3.896 14 N -0.602 5.602 15 C 0.576 3.424 16 O -0.516 6.516 17 C -0.249 4.249 18 C 0.094 3.906 19 N -0.463 5.463 20 H 0.444 0.556 21 N -0.268 5.268 22 C 0.191 3.809 23 C 0.050 3.950 24 C -0.170 4.170 25 C -0.227 4.227 26 C -0.014 4.014 27 O -0.130 6.130 28 C 0.115 3.885 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.192 0.808 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.206 0.794 40 H 0.124 0.876 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -15.670 2.771 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.020 4.020 14 N -0.336 5.336 15 C 0.362 3.638 16 O -0.392 6.392 17 C -0.264 4.264 18 C -0.055 4.055 19 N -0.171 5.171 20 H 0.289 0.711 21 N -0.092 5.092 22 C 0.024 3.976 23 C -0.003 4.003 24 C -0.191 4.191 25 C -0.247 4.247 26 C -0.085 4.085 27 O -0.022 6.022 28 C -0.005 4.005 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.208 0.792 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.222 0.778 40 H 0.142 0.858 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.762 -15.789 2.950 17.427 hybrid contribution 1.132 0.955 0.102 1.485 sum -5.629 -14.834 3.052 16.157 Atomic orbital electron populations 1.69896 1.05666 1.26763 1.49187 1.25048 0.94859 0.99163 0.94899 0.86622 0.79817 0.83656 0.78066 1.20725 1.21203 1.19951 1.21064 0.92843 0.90137 1.51974 0.92436 1.18887 0.92620 0.92211 0.94235 0.95362 1.21623 0.98535 0.94135 1.00469 1.21936 0.98541 0.99020 0.97684 1.21787 0.93394 0.88480 0.98308 1.48348 1.04957 1.08756 1.71504 1.17155 0.82226 0.86609 0.77854 1.90846 1.60394 1.38309 1.49603 1.21660 0.98897 0.97558 1.08251 1.23050 0.95988 0.87161 0.99265 1.45844 1.19086 1.14297 1.37873 0.71118 1.77333 1.07981 1.13968 1.09967 1.20091 0.91820 0.90510 0.95174 1.18571 1.01770 0.81969 0.97955 1.21739 0.99960 1.00592 0.96828 1.21702 1.06266 0.92513 1.04178 1.24300 0.94262 1.00568 0.89320 1.84372 1.50553 1.23054 1.44257 1.22178 0.98677 0.81218 0.98395 0.92669 0.93228 0.93115 0.92401 0.92199 0.92216 0.91031 0.79167 0.83263 0.83204 0.77780 0.85835 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 11.39 55.43 0.63 -25.09 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.15 8.57 -34.44 -0.29 -14.44 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.24 -91.87 -0.21 0.78 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C 0.10 1.59 5.50 -3.71 -0.02 1.57 16 14 N -0.60 -12.16 2.98 -174.38 -0.52 -12.68 16 15 C 0.58 12.16 7.51 -12.62 -0.09 12.06 16 16 O -0.52 -13.16 14.92 -11.13 -0.17 -13.32 16 17 C -0.25 -4.17 5.39 -102.91 -0.55 -4.73 16 18 C 0.09 1.07 9.63 -16.64 -0.16 0.91 16 19 N -0.46 -4.66 7.20 30.81 0.22 -4.43 16 20 H 0.44 2.45 8.96 -182.85 -1.64 0.81 16 21 N -0.27 -3.79 12.67 34.50 0.44 -3.36 16 22 C 0.19 3.23 7.30 -80.68 -0.59 2.64 16 23 C 0.05 0.88 7.06 -36.54 -0.26 0.62 16 24 C -0.17 -2.51 10.85 -39.37 -0.43 -2.94 16 25 C -0.23 -3.02 10.89 -39.81 -0.43 -3.46 16 26 C -0.01 -0.21 12.08 29.50 0.36 0.15 16 27 O -0.13 -2.49 9.14 -11.78 -0.11 -2.59 16 28 C 0.12 2.79 5.39 -3.93 -0.02 2.77 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.91 4.82 -51.93 -0.25 0.66 16 36 H 0.19 1.47 7.36 -52.49 -0.39 1.08 16 37 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.21 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.12 3.52 5.11 -51.93 -0.27 3.26 16 41 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -35.34 341.51 -8.78 -44.12 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.31 Total: 3.01 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.10 Total: -7.05 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.77 Total: -45.56 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.27 Total: -15.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.34 -8.78 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.427 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds