Wall clock time and date at job start Tue Mar 31 2020 10:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46829 * 300.00121 * 3 2 1 6 6 H 1.48495 * 109.46931 * 60.00077 * 3 2 1 7 7 C 1.37883 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47076 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46815 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.46885 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99829 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99747 * 0.02562 * 13 12 11 15 15 C 1.47545 * 119.99574 * 179.97438 * 13 12 11 16 16 C 1.39661 * 120.16505 * 359.97438 * 15 13 12 17 17 C 1.38343 * 119.84241 * 180.02562 * 16 15 13 18 18 N 1.40386 * 119.91528 * 179.97438 * 17 16 15 19 19 C 1.37075 * 126.46785 * 180.02562 * 18 17 16 20 20 C 1.34670 * 106.83750 * 180.02562 * 19 18 17 21 21 N 1.34116 * 108.18569 * 359.97438 * 20 19 18 22 22 C 1.30537 * 109.34356 * 0.02562 * 21 20 19 23 23 C 1.39075 * 120.16863 * 0.26256 * 17 16 15 24 24 C 1.37984 * 120.32680 * 359.47978 * 23 17 16 25 25 C 1.38714 * 120.15479 * 0.51959 * 24 23 17 26 26 O 1.35694 * 120.08619 * 179.72203 * 25 24 23 27 27 H 0.97002 * 119.99877 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46800 * 59.99636 * 9 7 2 29 29 H 1.09006 * 109.46895 * 300.00027 * 9 7 2 30 30 H 1.09003 * 109.47128 * 60.00361 * 10 9 7 31 31 H 1.08998 * 109.47267 * 299.99976 * 10 9 7 32 32 H 1.08999 * 109.47496 * 59.99939 * 11 10 9 33 33 H 1.08994 * 109.47469 * 299.99612 * 11 10 9 34 34 H 0.96995 * 120.00019 * 359.97438 * 12 11 10 35 35 H 1.07997 * 120.07641 * 0.02562 * 16 15 13 36 36 H 1.08001 * 126.58207 * 359.76408 * 19 18 17 37 37 H 1.07999 * 125.91010 * 179.97438 * 20 19 18 38 38 H 1.08002 * 125.71745 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.83537 * 179.74101 * 23 17 16 40 40 H 1.07998 * 119.92591 * 180.23551 * 24 23 17 41 41 H 0.96703 * 113.99605 * 270.01920 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9870 0.0001 12 7 2.4321 -6.1006 0.0007 13 6 1.9828 -7.3713 0.0008 14 8 0.7874 -7.5934 0.0000 15 6 2.9416 -8.4928 0.0009 16 6 4.3154 -8.2415 0.0003 17 6 5.2085 -9.2980 -0.0002 18 7 6.5897 -9.0472 -0.0014 19 6 7.5883 -9.9863 -0.0024 20 6 8.7555 -9.3145 -0.0027 21 7 8.4827 -8.0014 -0.0024 22 6 7.1888 -7.8286 -0.0014 23 6 4.7414 -10.6080 -0.0056 24 6 3.3856 -10.8643 0.0003 25 6 2.4781 -9.8152 0.0008 26 8 1.1451 -10.0688 0.0009 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6044 -0.8905 32 1 0.8531 -5.0451 -0.8896 33 1 0.8538 -5.0446 0.8903 34 1 3.3857 -5.9234 0.0003 35 1 4.6797 -7.2248 0.0002 36 1 7.4631 -11.0590 0.0010 37 1 9.7408 -9.7567 -0.0032 38 1 6.6799 -6.8760 -0.0005 39 1 5.4434 -11.4287 -0.0102 40 1 3.0300 -11.8841 -0.0001 41 1 0.7587 -10.1423 -0.8825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602092432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:48 Heat of formation + Delta-G solvation = -15.759913 kcal Electronic energy + Delta-G solvation = -24616.388127 eV Core-core repulsion = 20882.556141 eV Total energy + Delta-G solvation = -3733.831986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32085 -41.52739 -39.77421 -38.08488 -36.92938 -35.25689 -34.55910 -33.45899 -32.30451 -30.63356 -29.54465 -28.61661 -25.80161 -24.79072 -24.26160 -22.48739 -22.37359 -21.79642 -21.18367 -19.84978 -19.36252 -18.53019 -17.85660 -17.17804 -16.92616 -16.55651 -16.52383 -16.38959 -16.20564 -15.73521 -15.36813 -15.16160 -14.88158 -14.69953 -14.42496 -14.21268 -13.91959 -13.76322 -13.59185 -13.42201 -13.19990 -12.78751 -12.56709 -12.35968 -11.93466 -11.69799 -11.57512 -11.55758 -11.23235 -11.11223 -10.88093 -10.56703 -10.40919 -10.11891 -9.69860 -9.25165 -8.20375 -6.31538 -0.52546 -0.23580 1.11166 1.41393 1.41854 1.54819 1.57603 1.79013 2.05133 2.12649 2.41856 2.55271 3.11472 3.13817 3.32988 3.47684 3.75656 3.79220 3.95223 3.99004 4.14216 4.19475 4.26614 4.51491 4.52229 4.53403 4.60161 4.77768 4.82155 4.92477 4.93843 5.09726 5.16037 5.29104 5.35686 5.36288 5.51579 5.69813 5.74716 5.83702 6.17947 6.21515 6.45328 6.74595 6.86375 6.99942 7.11842 7.38275 8.91964 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.002780 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.788836 B =10068.739269 C =12301.212616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.131 3.869 12 N -0.711 5.711 13 C 0.549 3.451 14 O -0.562 6.562 15 C -0.154 4.154 16 C -0.082 4.082 17 C 0.109 3.891 18 N -0.411 5.411 19 C -0.046 4.046 20 C -0.047 4.047 21 N -0.523 5.523 22 C 0.174 3.826 23 C -0.075 4.075 24 C -0.118 4.118 25 C 0.154 3.846 26 O -0.493 6.493 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.411 0.589 35 H 0.152 0.848 36 H 0.216 0.784 37 H 0.191 0.809 38 H 0.226 0.774 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.500 -27.866 -1.794 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.007 3.993 12 N -0.363 5.363 13 C 0.337 3.663 14 O -0.441 6.441 15 C -0.158 4.158 16 C -0.102 4.102 17 C 0.016 3.984 18 N -0.090 5.090 19 C -0.176 4.176 20 C -0.192 4.192 21 N -0.240 5.240 22 C -0.106 4.106 23 C -0.095 4.095 24 C -0.137 4.137 25 C 0.107 3.893 26 O -0.307 6.307 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.169 0.831 36 H 0.233 0.767 37 H 0.208 0.792 38 H 0.243 0.757 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 14.099 -27.269 -1.203 30.722 hybrid contribution -0.467 0.880 -0.432 1.086 sum 13.633 -26.389 -1.635 29.747 Atomic orbital electron populations 1.70113 1.07928 1.27724 1.51803 1.26010 0.95727 1.03518 0.94821 0.85387 0.79255 0.78732 0.77604 1.18178 1.20587 1.20642 1.21714 0.93773 0.91998 1.50269 0.91506 1.18941 0.94439 0.92920 0.95123 1.21611 0.98495 0.91731 1.02235 1.21274 0.91837 0.85200 1.00983 1.45914 1.11147 1.04992 1.74279 1.18420 0.88099 0.83230 0.76509 1.90802 1.17506 1.85085 1.50752 1.20123 0.92972 0.93649 1.09069 1.20940 0.90524 0.99751 0.99027 1.17726 0.80631 0.95067 1.04935 1.43309 1.04378 1.08237 1.53119 1.23350 0.86667 0.97514 1.10046 1.22840 0.99807 0.88915 1.07614 1.70336 1.13754 1.20096 1.19843 1.25757 0.88937 0.90878 1.05069 1.21278 0.96373 0.94736 0.97105 1.21557 0.91408 1.00383 1.00319 1.18828 0.84831 0.90295 0.95374 1.84728 1.17968 1.92915 1.35064 0.92817 0.98827 0.98986 0.91356 0.91147 0.92713 0.93106 0.75110 0.83069 0.76749 0.79171 0.75737 0.80827 0.80688 0.72830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 N -0.71 -18.95 5.51 -466.25 -2.57 -21.52 16 13 C 0.55 15.61 7.76 86.70 0.67 16.29 16 14 O -0.56 -20.45 15.15 16.97 0.26 -20.19 16 15 C -0.15 -3.15 5.88 -20.02 -0.12 -3.27 16 16 C -0.08 -1.25 8.95 22.64 0.20 -1.05 16 17 C 0.11 1.40 6.63 38.00 0.25 1.65 16 18 N -0.41 -5.77 2.99 -350.46 -1.05 -6.82 16 19 C -0.05 -0.52 10.85 83.06 0.90 0.38 16 20 C -0.05 -0.73 11.86 83.53 0.99 0.26 16 21 N -0.52 -11.20 11.25 -199.73 -2.25 -13.45 16 22 C 0.17 3.00 11.91 180.01 2.14 5.14 16 23 C -0.08 -0.63 9.46 22.41 0.21 -0.42 16 24 C -0.12 -1.18 9.97 22.32 0.22 -0.96 16 25 C 0.15 2.74 6.72 22.84 0.15 2.89 16 26 O -0.49 -10.08 11.57 -69.17 -0.80 -10.88 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.41 8.14 6.50 -92.71 -0.60 7.54 16 35 H 0.15 1.79 5.10 -2.91 -0.01 1.78 16 36 H 0.22 0.53 7.14 -2.91 -0.02 0.51 16 37 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.23 2.67 7.06 -2.91 -0.02 2.65 16 39 H 0.17 0.25 6.79 -2.91 -0.02 0.23 16 40 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.41 5.40 9.06 -74.06 -0.67 4.73 16 Total: -1.00 -80.57 353.74 2.85 -77.72 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -0.19 Total: 11.89 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 7.13 Total: -5.80 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -5.58 Total: -98.50 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.54 Total: -31.08 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -80.57 2.85 -77.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.957 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds