Wall clock time and date at job start Tue Mar 31 2020 11:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38302 * 119.96938 * 2 1 4 4 C 1.38250 * 120.13183 * 180.02562 * 3 2 1 5 5 C 1.38148 * 120.06864 * 0.02562 * 4 3 2 6 6 C 1.38812 * 119.92986 * 359.97438 * 5 4 3 7 7 N 1.40225 * 120.06025 * 179.97438 * 6 5 4 8 8 C 1.35040 * 126.60752 * 5.00304 * 7 6 5 9 9 C 1.36697 * 106.79174 * 179.97438 * 8 7 6 10 10 C 1.47367 * 125.77910 * 179.97438 * 9 8 7 11 11 O 1.21523 * 120.00033 * 359.97438 * 10 9 8 12 12 O 1.34754 * 119.99933 * 179.72045 * 10 9 8 13 13 C 1.45202 * 116.99763 * 180.27213 * 12 10 9 14 14 C 1.53001 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47468 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47176 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00094 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99791 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00242 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47083 * 59.99767 * 20 18 16 22 22 H 1.48495 * 109.47410 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47051 * 300.00141 * 20 18 16 24 24 N 1.34456 * 108.44165 * 0.23980 * 9 8 7 25 25 N 1.28749 * 109.57308 * 359.58592 * 24 9 8 26 26 C 1.38098 * 119.96680 * 180.27611 * 2 1 3 27 27 H 1.09003 * 109.47578 * 89.99482 * 1 2 3 28 28 H 1.08993 * 109.47402 * 210.00203 * 1 2 3 29 29 H 1.09006 * 109.47184 * 329.99864 * 1 2 3 30 30 H 1.08003 * 119.93340 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96688 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.03280 * 179.97438 * 5 4 3 33 33 H 1.07998 * 126.60748 * 359.95602 * 8 7 6 34 34 H 1.08998 * 109.47630 * 300.00501 * 13 12 10 35 35 H 1.09004 * 109.46770 * 60.00905 * 13 12 10 36 36 H 1.08998 * 109.47123 * 300.00640 * 14 13 12 37 37 H 1.09002 * 109.47078 * 60.00027 * 14 13 12 38 38 H 1.08997 * 109.46840 * 300.00585 * 15 14 13 39 39 H 1.09004 * 109.46779 * 60.00535 * 15 14 13 40 40 H 0.97004 * 119.99967 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.03235 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2020 -0.0005 5 6 4.2759 0.0084 -0.0016 6 6 3.5852 -1.1957 -0.0016 7 7 4.2885 -2.4088 -0.0032 8 6 5.6267 -2.5640 0.0896 9 6 5.8722 -3.9081 0.0486 10 6 7.1997 -4.5440 0.1190 11 8 8.1974 -3.8579 0.2226 12 8 7.3070 -5.8865 0.0735 13 6 8.6453 -6.4440 0.1539 14 6 8.5669 -7.9705 0.0862 15 6 9.9770 -8.5579 0.1715 16 6 9.8998 -10.0615 0.1042 17 1 8.9409 -10.5492 0.0095 18 6 11.0533 -10.8143 0.1634 19 7 12.2210 -10.2204 0.2781 20 14 10.9577 -12.6779 0.0792 21 1 10.3297 -13.0839 -1.2039 22 1 12.3263 -13.2481 0.1621 23 1 10.1408 -13.1833 1.2118 24 7 4.6978 -4.5515 -0.0726 25 7 3.7374 -3.6945 -0.1009 26 6 2.1968 -1.1964 -0.0058 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6562 2.1325 -0.0004 31 1 4.1172 2.1392 -0.0001 32 1 5.3559 0.0122 -0.0024 33 1 6.3616 -1.7776 0.1788 34 1 9.2437 -6.0740 -0.6786 35 1 9.1075 -6.1450 1.0947 36 1 7.9684 -8.3408 0.9184 37 1 8.1048 -8.2692 -0.8548 38 1 10.5758 -8.1875 -0.6605 39 1 10.4387 -8.2593 1.1127 40 1 13.0326 -10.7501 0.3194 41 1 1.6567 -2.1316 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725967012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:52 Heat of formation + Delta-G solvation = 7.168555 kcal Electronic energy + Delta-G solvation = -23779.776336 eV Core-core repulsion = 20046.938603 eV Total energy + Delta-G solvation = -3732.837733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.73724 -41.35306 -40.43886 -37.89893 -36.17333 -35.90662 -33.71937 -33.47645 -32.58023 -31.12495 -29.05375 -28.02102 -26.19852 -25.46788 -24.65386 -23.30117 -22.16978 -22.05996 -21.72075 -19.64373 -18.69109 -18.19693 -17.94287 -17.63883 -17.13312 -17.05862 -16.50025 -16.34014 -16.13617 -15.62292 -15.00874 -14.89159 -14.77940 -14.25843 -14.14064 -13.90098 -13.84795 -13.55743 -13.52156 -13.15257 -12.81057 -12.77905 -12.53833 -12.49797 -12.40827 -12.21222 -12.11173 -12.09281 -12.00653 -11.50174 -11.42489 -11.25873 -10.86046 -10.55437 -9.92562 -9.59303 -8.20677 -6.31856 -0.75542 0.12249 0.21696 0.64529 0.67774 1.41094 1.45031 1.45933 1.53456 1.73399 2.42076 2.60928 2.87345 3.11840 3.12920 3.52020 3.54902 3.76167 3.91207 4.01329 4.03455 4.03961 4.17938 4.21781 4.32345 4.42509 4.48072 4.77586 4.80443 4.82027 4.84067 4.85588 5.06585 5.17050 5.18851 5.26877 5.28419 5.36224 5.49858 5.52252 5.65395 5.81163 5.85888 6.20346 6.37865 6.67256 6.83051 7.37156 8.91086 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.042184 B = 0.001789 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.598010 B =15645.356831 C =16275.430538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.107 4.107 4 C -0.089 4.089 5 C -0.128 4.128 6 C 0.101 3.899 7 N -0.299 5.299 8 C 0.124 3.876 9 C -0.100 4.100 10 C 0.555 3.445 11 O -0.518 6.518 12 O -0.347 6.347 13 C 0.078 3.922 14 C -0.096 4.096 15 C 0.027 3.973 16 C -0.547 4.547 17 H 0.062 0.938 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.267 1.267 24 N -0.201 5.201 25 N -0.074 5.074 26 C -0.120 4.120 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.252 0.748 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.472 30.633 -0.468 38.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.126 4.126 4 C -0.107 4.107 5 C -0.149 4.149 6 C 0.011 3.989 7 N -0.076 5.076 8 C -0.030 4.030 9 C -0.236 4.236 10 C 0.398 3.602 11 O -0.406 6.406 12 O -0.262 6.262 13 C 0.005 3.995 14 C -0.134 4.134 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.192 1.192 24 N -0.075 5.075 25 N -0.053 5.053 26 C -0.140 4.140 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.268 0.732 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.240 29.897 -0.559 38.493 hybrid contribution 1.413 -0.817 0.070 1.634 sum -22.826 29.081 -0.488 36.973 Atomic orbital electron populations 1.20905 0.88775 1.04157 1.03599 1.20132 0.97814 0.91751 0.97468 1.21686 0.94662 0.98587 0.97617 1.21456 0.94393 0.98015 0.96831 1.21320 1.01918 0.89857 1.01764 1.17989 0.92146 0.80960 1.07819 1.47833 1.05471 1.07768 1.46492 1.23840 0.86373 0.98012 0.94799 1.20311 0.91374 0.91473 1.20456 1.19558 0.87002 0.81186 0.72417 1.90858 1.37893 1.64613 1.47271 1.86621 1.35347 1.21596 1.82658 1.23295 0.79109 0.94543 1.02578 1.21480 0.99218 0.90314 1.02374 1.18926 0.91257 0.95037 0.95753 1.21596 0.93385 0.92780 1.50676 0.91972 1.25970 0.94952 1.04207 0.94573 1.70084 0.98364 1.37652 1.50966 0.85462 0.77307 0.78866 0.79171 1.19220 1.20695 1.19208 1.74822 0.97909 1.25847 1.08957 1.82087 1.17006 0.82960 1.23259 1.20947 0.91231 1.00194 1.01658 0.89903 0.91399 0.89183 0.82138 0.81291 0.82579 0.73212 0.90936 0.90936 0.91780 0.91771 0.98101 0.98097 0.92657 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.01 71.23 0.71 0.13 16 2 C -0.07 -0.63 5.88 -19.88 -0.12 -0.75 16 3 C -0.11 -0.54 9.70 22.29 0.22 -0.32 16 4 C -0.09 -0.41 10.04 22.25 0.22 -0.19 16 5 C -0.13 -1.11 9.47 22.39 0.21 -0.89 16 6 C 0.10 1.53 6.69 38.08 0.25 1.78 16 7 N -0.30 -6.15 3.82 -186.86 -0.71 -6.86 16 8 C 0.12 2.42 10.60 83.84 0.89 3.31 16 9 C -0.10 -2.81 7.02 40.79 0.29 -2.53 16 10 C 0.56 18.34 7.96 70.22 0.56 18.89 16 11 O -0.52 -17.74 16.65 19.76 0.33 -17.41 16 12 O -0.35 -12.89 10.23 -56.65 -0.58 -13.47 16 13 C 0.08 3.00 5.48 71.98 0.39 3.40 16 14 C -0.10 -4.21 5.53 30.59 0.17 -4.04 16 15 C 0.03 1.48 4.97 29.85 0.15 1.62 16 16 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 20 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 N -0.20 -6.34 12.39 -50.02 -0.62 -6.96 16 25 N -0.07 -2.02 13.13 37.02 0.49 -1.54 16 26 C -0.12 -1.72 9.33 22.38 0.21 -1.51 16 27 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.40 8.09 -2.39 -0.02 0.38 16 29 H 0.09 0.13 8.09 -2.38 -0.02 0.11 16 30 H 0.16 -0.09 8.06 -2.91 -0.02 -0.12 16 31 H 0.17 -0.23 8.06 -2.91 -0.02 -0.26 16 32 H 0.16 0.62 6.84 -2.91 -0.02 0.60 16 33 H 0.25 2.49 7.15 -2.91 -0.02 2.47 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.13 2.09 7.74 -2.91 -0.02 2.07 16 Total: -1.00 -75.27 364.64 7.11 -68.16 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.04 Total: -0.06 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.85 Total: -12.04 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -0.56 Total: -72.12 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.25 Total: -30.88 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -75.27 7.11 -68.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725967012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.326 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds