Wall clock time and date at job start Tue Mar 31 2020 11:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36692 * 126.60343 * 2 1 4 4 C 1.47370 * 125.77815 * 0.25163 * 3 2 1 5 5 O 1.21518 * 120.00255 * 359.71118 * 4 3 2 6 6 O 1.34758 * 120.00279 * 179.70961 * 4 3 2 7 7 C 1.45201 * 117.00123 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47086 * 30.00739 * 7 6 4 9 9 C 1.52999 * 109.47132 * 270.00114 * 7 6 4 10 10 C 1.50704 * 109.46800 * 150.00198 * 7 6 4 11 11 H 1.07992 * 119.99862 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99772 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00103 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00062 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47328 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47157 * 119.99886 * 14 12 10 17 17 H 1.48504 * 109.47112 * 240.00088 * 14 12 10 18 18 N 1.34462 * 108.44547 * 179.97438 * 3 2 1 19 19 N 1.28748 * 109.56921 * 0.02562 * 18 3 2 20 20 N 1.35045 * 126.60793 * 179.97438 * 2 1 3 21 21 C 1.40225 * 126.60045 * 359.97438 * 20 2 1 22 22 C 1.38851 * 120.06722 * 42.01416 * 21 20 2 23 23 C 1.38103 * 119.93342 * 179.97438 * 22 21 20 24 24 C 1.38292 * 120.06681 * 359.97438 * 23 22 21 25 25 C 1.38264 * 120.13298 * 359.97438 * 24 23 22 26 26 C 1.50699 * 119.96677 * 180.02562 * 25 24 23 27 27 C 1.38140 * 120.06325 * 359.78936 * 25 24 23 28 28 H 1.08993 * 109.47760 * 84.62414 * 1 2 3 29 29 H 1.09000 * 109.47058 * 204.62431 * 1 2 3 30 30 H 1.09006 * 109.47151 * 324.61704 * 1 2 3 31 31 H 1.09007 * 109.47061 * 60.00273 * 9 7 6 32 32 H 1.08999 * 109.46901 * 180.02562 * 9 7 6 33 33 H 1.09002 * 109.47344 * 300.00355 * 9 7 6 34 34 H 0.96999 * 120.00134 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.03136 * 359.97438 * 22 21 20 36 36 H 1.07998 * 119.96428 * 180.02562 * 23 22 21 37 37 H 1.08000 * 119.93572 * 180.02562 * 24 23 22 38 38 H 1.08995 * 109.47156 * 90.00235 * 26 25 24 39 39 H 1.09001 * 109.46865 * 209.99918 * 26 25 24 40 40 H 1.09000 * 109.47365 * 329.99706 * 26 25 24 41 41 H 1.08003 * 120.03657 * 180.26102 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0973 0.0000 4 6 1.8760 2.5019 0.0053 5 8 0.6891 2.7625 0.0048 6 8 2.7843 3.4973 0.0106 7 6 2.2730 4.8563 0.0150 8 1 1.3113 4.8810 0.5274 9 6 2.0957 5.3392 -1.4260 10 6 3.2466 5.7570 0.7304 11 1 4.1586 5.3490 1.1404 12 6 2.9735 7.1022 0.8607 13 7 1.8636 7.5993 0.3601 14 14 4.1807 8.2188 1.7468 15 1 5.3435 7.4208 2.2119 16 1 4.6482 9.2787 0.8178 17 1 3.5103 8.8447 2.9148 18 7 3.5997 0.6783 0.0006 19 7 3.6314 -0.6088 0.0004 20 7 2.3123 -1.0841 0.0005 21 6 1.9072 -2.4265 0.0016 22 6 0.8512 -2.8352 -0.8020 23 6 0.4549 -4.1581 -0.7992 24 6 1.1089 -5.0756 0.0026 25 6 2.1615 -4.6719 0.8031 26 6 2.8720 -5.6750 1.6749 27 6 2.5656 -3.3509 0.8008 28 1 -0.3634 0.0963 -1.0230 29 1 -0.3633 -0.9342 0.4282 30 1 -0.3634 0.8379 0.5951 31 1 1.3914 4.6877 -1.9435 32 1 1.7123 6.3595 -1.4226 33 1 3.0574 5.3145 -1.9384 34 1 1.6713 8.5456 0.4521 35 1 0.3403 -2.1192 -1.4287 36 1 -0.3662 -4.4766 -1.4244 37 1 0.7975 -6.1097 0.0028 38 1 3.7008 -6.1154 1.1207 39 1 3.2547 -5.1760 2.5652 40 1 2.1744 -6.4590 1.9694 41 1 3.3906 -3.0369 1.4231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:32 Heat of formation + Delta-G solvation = 12.536929 kcal Electronic energy + Delta-G solvation = -25181.987553 eV Core-core repulsion = 21449.382610 eV Total energy + Delta-G solvation = -3732.604943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.75177 -41.12632 -40.43080 -37.67570 -36.29235 -35.32340 -33.79102 -33.48957 -31.82470 -30.94117 -29.19906 -27.97378 -27.46208 -25.50129 -25.23868 -23.22786 -22.93813 -21.57800 -21.40224 -19.51369 -18.69428 -17.94403 -17.73861 -17.51579 -17.11592 -16.68301 -16.47919 -15.98670 -15.59962 -15.05177 -14.97297 -14.79389 -14.38103 -14.26795 -14.14879 -14.06293 -13.84852 -13.36213 -13.32843 -13.17749 -13.09109 -12.98748 -12.81754 -12.60468 -12.52798 -12.39665 -12.25990 -12.16234 -11.78883 -11.64917 -11.57735 -11.00401 -10.62229 -10.52804 -9.95448 -9.69803 -8.29612 -6.45503 -0.60947 0.18386 0.22704 0.42596 0.73547 1.41010 1.42094 1.55653 1.81974 1.86185 2.38923 2.52984 2.94798 3.00666 3.29010 3.45201 3.59231 3.74998 3.88063 4.04533 4.20119 4.21719 4.31449 4.42619 4.46699 4.51655 4.58275 4.75540 4.79035 4.81340 4.81650 4.84030 4.94520 5.12686 5.19456 5.21354 5.26429 5.39981 5.46823 5.52435 5.60600 5.84147 5.86997 6.02509 6.50221 6.62824 6.89251 7.25092 8.78471 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030323 B = 0.002610 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.174393 B =10726.594604 C =11293.354427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.150 3.850 3 C -0.108 4.108 4 C 0.542 3.458 5 O -0.523 6.523 6 O -0.352 6.352 7 C 0.217 3.783 8 H 0.019 0.981 9 C -0.142 4.142 10 C -0.550 4.550 11 H 0.060 0.940 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 0.982 3.018 15 H -0.269 1.269 16 H -0.269 1.269 17 H -0.272 1.272 18 N -0.203 5.203 19 N -0.077 5.077 20 N -0.305 5.305 21 C 0.095 3.905 22 C -0.121 4.121 23 C -0.089 4.089 24 C -0.099 4.099 25 C -0.072 4.072 26 C -0.117 4.117 27 C -0.113 4.113 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.272 0.728 35 H 0.145 0.855 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -29.892 -1.062 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.014 3.986 3 C -0.245 4.245 4 C 0.386 3.614 5 O -0.413 6.413 6 O -0.267 6.267 7 C 0.164 3.836 8 H 0.037 0.963 9 C -0.200 4.200 10 C -0.587 4.587 11 H 0.079 0.921 12 C -0.180 4.180 13 N -0.551 5.551 14 Si 0.805 3.195 15 H -0.194 1.194 16 H -0.194 1.194 17 H -0.197 1.197 18 N -0.076 5.076 19 N -0.055 5.055 20 N -0.084 5.084 21 C 0.006 3.994 22 C -0.141 4.141 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.073 4.073 26 C -0.173 4.173 27 C -0.133 4.133 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.189 0.811 37 H 0.184 0.816 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.949 -29.934 -1.078 30.359 hybrid contribution -0.140 1.510 0.357 1.558 sum -5.088 -28.423 -0.722 28.884 Atomic orbital electron populations 1.21005 0.81357 1.06280 1.06598 1.22369 0.97592 0.84488 0.94158 1.20198 0.89828 0.92658 1.21769 1.19696 0.84101 0.85068 0.72559 1.90741 1.17620 1.84749 1.48221 1.86637 1.39935 1.18338 1.81806 1.20503 0.95054 0.72710 0.95289 0.96288 1.21997 0.99348 1.02863 0.95767 1.21287 1.06539 0.93332 1.37587 0.92149 1.25773 0.97680 0.98631 0.95943 1.69999 1.25294 1.14678 1.45107 0.85148 0.78256 0.77870 0.78202 1.19360 1.19388 1.19674 1.74755 1.19752 1.04179 1.08944 1.82041 0.96888 1.02723 1.23869 1.47700 1.05844 1.05958 1.48920 1.17939 1.00433 0.78325 1.02748 1.21389 0.95992 0.98862 0.97883 1.21465 1.00188 0.90542 0.98511 1.21705 0.93972 1.01769 0.94220 1.20141 0.96527 0.92755 0.97858 1.20901 1.00907 0.97338 0.98159 1.21018 1.00221 0.93396 0.98699 0.86268 0.86956 0.88425 0.95215 0.89514 0.94058 0.91819 0.83704 0.81091 0.81643 0.89898 0.91586 0.88873 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 8.19 71.23 0.58 -1.41 16 2 C 0.15 4.56 6.84 41.70 0.29 4.84 16 3 C -0.11 -4.34 7.02 40.78 0.29 -4.05 16 4 C 0.54 25.67 7.93 70.23 0.56 26.23 16 5 O -0.52 -24.85 14.11 19.78 0.28 -24.57 16 6 O -0.35 -19.10 9.87 -56.69 -0.56 -19.66 16 7 C 0.22 12.55 2.57 29.85 0.08 12.62 16 8 H 0.02 1.20 7.16 -2.39 -0.02 1.18 16 9 C -0.14 -7.60 9.33 71.98 0.67 -6.93 16 10 C -0.55 -32.95 8.90 25.60 0.23 -32.72 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.02 1.12 5.30 84.65 0.45 1.57 16 13 N -0.91 -53.03 11.32 21.45 0.24 -52.79 16 14 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 N -0.20 -8.48 12.39 -50.02 -0.62 -9.10 16 19 N -0.08 -2.76 13.64 37.02 0.50 -2.25 16 20 N -0.30 -8.76 3.71 -175.14 -0.65 -9.41 16 21 C 0.09 1.97 6.13 38.08 0.23 2.21 16 22 C -0.12 -1.67 8.36 22.38 0.19 -1.49 16 23 C -0.09 -0.69 10.04 22.25 0.22 -0.46 16 24 C -0.10 -0.72 9.70 22.29 0.22 -0.50 16 25 C -0.07 -0.84 5.88 -19.88 -0.12 -0.96 16 26 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 27 C -0.11 -2.09 9.51 22.38 0.21 -1.88 16 28 H 0.12 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.11 1.59 6.97 -2.39 -0.02 1.58 16 30 H 0.10 2.49 6.73 -2.38 -0.02 2.47 16 31 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.09 4.87 6.07 -2.39 -0.01 4.86 16 33 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.15 1.67 7.02 -2.91 -0.02 1.65 16 36 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.09 0.28 8.08 -2.39 -0.02 0.26 16 41 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -75.92 354.56 7.09 -68.83 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.06 Total: 5.45 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.81 Total: -3.05 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.52 Total: -73.55 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.28 Total: -44.24 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -75.92 7.09 -68.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.367 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds