Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37726 * 119.95867 * 2 1 4 4 C 1.39742 * 119.92027 * 180.27527 * 3 2 1 5 5 C 1.47539 * 120.08696 * 180.02562 * 4 3 2 6 6 O 1.21497 * 120.00084 * 359.95004 * 5 4 3 7 7 O 1.34736 * 120.00127 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00068 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47301 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47018 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46513 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00609 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99711 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99956 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00114 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46890 * 60.00656 * 15 13 11 17 17 H 1.48496 * 109.46990 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47175 * 300.00147 * 15 13 11 19 19 C 1.39784 * 119.83231 * 359.97438 * 4 3 2 20 20 C 1.37695 * 119.91369 * 0.02562 * 19 4 3 21 21 C 1.39040 * 119.95985 * 180.27677 * 2 1 3 22 22 N 1.39845 * 119.91902 * 359.72648 * 21 2 1 23 23 C 1.34811 * 126.84874 * 132.80628 * 22 21 2 24 24 N 1.30820 * 108.01692 * 179.97438 * 23 22 21 25 25 C 1.33291 * 109.85149 * 0.02562 * 24 23 22 26 26 N 1.30731 * 109.01155 * 359.74519 * 25 24 23 27 27 H 1.09006 * 109.47146 * 264.39729 * 1 2 3 28 28 H 1.08995 * 109.47641 * 24.39951 * 1 2 3 29 29 H 1.09002 * 109.47004 * 144.40028 * 1 2 3 30 30 H 1.08000 * 120.04074 * 0.25547 * 3 2 1 31 31 H 1.08999 * 109.47403 * 299.99743 * 8 7 5 32 32 H 1.09007 * 109.47171 * 60.00085 * 8 7 5 33 33 H 1.08999 * 109.46889 * 300.00310 * 9 8 7 34 34 H 1.08993 * 109.46723 * 60.00120 * 9 8 7 35 35 H 1.08999 * 109.46955 * 300.00106 * 10 9 8 36 36 H 1.08993 * 109.46942 * 60.00123 * 10 9 8 37 37 H 0.97004 * 119.99997 * 180.02562 * 14 13 11 38 38 H 1.07999 * 120.04557 * 180.02562 * 19 4 3 39 39 H 1.07996 * 119.95575 * 180.02562 * 20 19 4 40 40 H 1.07995 * 125.99295 * 359.94808 * 23 22 21 41 41 H 1.08001 * 125.49317 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.1932 0.0000 4 6 3.5921 1.1923 -0.0058 5 6 4.3326 2.4684 -0.0053 6 8 3.7275 3.5219 -0.0007 7 8 5.6800 2.4655 -0.0104 8 6 6.3420 3.7578 -0.0101 9 6 7.8584 3.5541 -0.0156 10 6 8.5559 4.9159 -0.0146 11 6 10.0495 4.7151 -0.0194 12 1 10.4601 3.7162 -0.0232 13 6 10.8918 5.8067 -0.0200 14 7 10.3917 7.0231 -0.0158 15 14 12.7431 5.5579 -0.0267 16 1 13.1364 4.8008 -1.2421 17 1 13.4201 6.8796 -0.0256 18 1 13.1445 4.7957 1.1829 19 6 4.2867 -0.0208 -0.0111 20 6 3.5921 -1.2097 -0.0110 21 6 2.2013 -1.2046 -0.0058 22 7 1.4995 -2.4142 -0.0059 23 6 1.7246 -3.4794 -0.8009 24 7 0.8567 -4.4074 -0.4894 25 6 0.0654 -3.9758 0.4926 26 7 0.4230 -2.7633 0.8259 27 1 -0.3634 -0.1003 1.0228 28 1 -0.3634 0.9358 -0.4245 29 1 -0.3633 -0.8356 -0.5982 30 1 1.6547 2.1285 0.0042 31 1 6.0470 4.3174 -0.8977 32 1 6.0537 4.3135 0.8823 33 1 8.1530 2.9946 0.8723 34 1 8.1470 2.9983 -0.9076 35 1 8.2613 5.4756 -0.9023 36 1 8.2672 5.4713 0.8777 37 1 10.9843 7.7911 -0.0166 38 1 5.3666 -0.0255 -0.0152 39 1 4.1280 -2.1473 -0.0147 40 1 2.4874 -3.5536 -1.5618 41 1 -0.7383 -4.5388 0.9435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744139060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = 22.109070 kcal Electronic energy + Delta-G solvation = -24164.728099 eV Core-core repulsion = 20432.538235 eV Total energy + Delta-G solvation = -3732.189864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.79057 -40.67898 -39.39411 -36.56174 -34.71790 -34.03756 -33.36504 -31.84374 -31.68566 -30.43057 -27.67066 -27.10314 -25.31435 -23.38194 -23.06131 -22.40197 -21.84985 -20.69358 -20.34092 -18.71259 -17.75681 -17.06956 -16.54272 -16.39484 -16.15097 -15.99330 -15.16385 -14.84271 -14.67547 -14.50233 -14.38753 -13.97257 -13.84510 -13.76756 -12.97610 -12.96271 -12.56544 -12.31589 -12.20637 -12.14322 -11.96758 -11.75558 -10.99202 -10.88002 -10.78083 -10.69555 -10.59497 -10.52593 -10.46379 -10.32826 -9.78409 -9.56051 -9.46464 -9.21758 -9.10167 -8.41598 -6.06489 -4.09865 -0.06852 0.74183 1.15464 1.70139 2.27091 2.44023 2.66521 3.23321 3.30145 3.34804 3.36992 3.79958 4.06760 4.14818 4.30238 4.38739 4.43582 4.53310 4.68684 4.80985 4.97106 5.08212 5.24143 5.29366 5.32879 5.49987 5.50871 5.53951 5.63366 5.67831 5.80172 5.83203 5.88297 5.94804 6.07951 6.36464 6.46836 6.47709 6.74065 6.92049 7.50893 7.55921 7.66738 7.75015 7.91256 8.31909 8.96036 9.54513 11.04788 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.001965 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.062517 B =14245.403759 C =15059.979055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.077 4.077 3 C -0.044 4.044 4 C -0.104 4.104 5 C 0.502 3.498 6 O -0.503 6.503 7 O -0.352 6.352 8 C 0.069 3.931 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.049 4.049 20 C -0.123 4.123 21 C 0.159 3.841 22 N -0.335 5.335 23 C 0.267 3.733 24 N -0.539 5.539 25 C 0.202 3.798 26 N -0.306 5.306 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.224 0.776 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 -20.377 -1.064 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C -0.062 4.062 4 C -0.106 4.106 5 C 0.346 3.654 6 O -0.393 6.393 7 O -0.268 6.268 8 C -0.004 4.004 9 C -0.147 4.147 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.068 4.068 20 C -0.143 4.143 21 C 0.067 3.933 22 N -0.120 5.120 23 C -0.028 4.028 24 N -0.265 5.265 25 C -0.101 4.101 26 N -0.131 5.131 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.240 0.760 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -21.155 -19.743 -0.644 28.944 hybrid contribution 1.238 0.149 -0.096 1.251 sum -19.917 -19.594 -0.740 27.949 Atomic orbital electron populations 1.20746 0.89323 1.02786 1.03486 1.19729 0.97295 0.90635 1.00198 1.21123 0.92176 0.98248 0.94701 1.19381 0.93267 0.91676 1.06250 1.20936 0.82033 0.88928 0.73471 1.90851 1.69817 1.33205 1.45399 1.86533 1.19110 1.38083 1.83083 1.23587 0.94091 0.80299 1.02412 1.21781 0.88514 1.02331 1.02026 1.19051 0.94874 0.89657 0.97738 1.21120 0.91022 0.92709 1.51264 0.92470 1.25035 0.99065 0.95207 0.95162 1.69957 1.35235 0.97753 1.50337 0.86597 0.85122 0.77272 0.78659 1.20178 1.21254 1.20183 1.21422 1.01529 0.89918 0.93922 1.21019 0.91018 0.99803 1.02485 1.17503 0.90132 0.82433 1.03253 1.47614 1.25224 1.12081 1.27088 1.26357 0.98576 0.82363 0.95510 1.70638 1.08298 1.30036 1.17523 1.26206 0.99338 0.90863 0.93683 1.78280 1.02685 1.16742 1.15402 0.89922 0.90908 0.91693 0.83254 0.91256 0.91274 0.92067 0.92058 0.96192 0.96196 0.92810 0.82714 0.84069 0.76022 0.76192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 8.86 36.00 0.32 -0.50 16 2 C -0.08 -0.68 5.89 -104.51 -0.62 -1.29 16 3 C -0.04 -0.43 9.21 -39.21 -0.36 -0.79 16 4 C -0.10 -1.15 5.87 -104.97 -0.62 -1.77 16 5 C 0.50 7.30 7.89 34.52 0.27 7.57 16 6 O -0.50 -8.59 16.13 -19.26 -0.31 -8.90 16 7 O -0.35 -5.45 9.46 -40.59 -0.38 -5.83 16 8 C 0.07 1.21 5.48 37.16 0.20 1.41 16 9 C -0.11 -2.16 5.53 -26.73 -0.15 -2.31 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 15 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.05 -0.43 9.61 -39.20 -0.38 -0.81 16 20 C -0.12 -0.90 9.63 -39.47 -0.38 -1.28 16 21 C 0.16 1.34 6.27 -83.59 -0.52 0.82 16 22 N -0.33 -2.82 3.11 -11.77 -0.04 -2.86 16 23 C 0.27 1.85 12.31 -90.32 -1.11 0.74 16 24 N -0.54 -4.58 11.19 -15.73 -0.18 -4.76 16 25 C 0.20 1.55 13.03 -91.75 -1.20 0.36 16 26 N -0.31 -2.84 11.10 29.30 0.33 -2.52 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 29 H 0.06 0.54 7.22 -51.93 -0.38 0.16 16 30 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.16 1.23 7.60 -52.49 -0.40 0.83 16 39 H 0.14 0.69 8.03 -52.49 -0.42 0.27 16 40 H 0.22 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.22 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -33.42 361.95 -9.86 -43.28 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.36 Total: -3.74 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -5.08 Total: -10.64 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.85 Total: -35.86 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.69 Total: -14.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.42 -9.86 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744139060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.390 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds