Wall clock time and date at job start Tue Mar 31 2020 11:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38852 * 125.50452 * 2 1 4 4 C 1.38691 * 107.67593 * 179.97438 * 3 2 1 5 5 N 1.34170 * 132.23935 * 180.02562 * 4 3 2 6 6 C 1.30889 * 121.17483 * 179.97438 * 5 4 3 7 7 C 1.41594 * 120.06591 * 359.97438 * 6 5 4 8 8 C 1.47464 * 120.50845 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99428 * 172.77044 * 8 7 6 10 10 O 1.34742 * 119.99952 * 352.77110 * 8 7 6 11 11 C 1.45208 * 116.99642 * 185.05328 * 10 8 7 12 12 C 1.52999 * 109.47071 * 175.12856 * 11 10 8 13 13 C 1.50697 * 115.54947 * 185.90686 * 12 11 10 14 14 H 1.08003 * 119.99392 * 145.73355 * 13 12 11 15 15 C 1.37869 * 120.00388 * 325.73604 * 13 12 11 16 16 N 1.31516 * 120.00214 * 166.74861 * 15 13 12 17 17 Si 1.86808 * 119.99809 * 346.75086 * 15 13 12 18 18 H 1.48498 * 109.47191 * 95.54146 * 17 15 13 19 19 H 1.48504 * 109.46805 * 215.54299 * 17 15 13 20 20 H 1.48494 * 109.47079 * 335.54056 * 17 15 13 21 21 C 1.53004 * 117.49564 * 40.23866 * 12 11 10 22 22 C 1.53005 * 117.49727 * 331.58405 * 12 11 10 23 23 C 1.38139 * 118.97852 * 0.02562 * 7 6 5 24 24 C 1.50704 * 120.55726 * 180.02562 * 23 7 6 25 25 N 1.36047 * 118.88826 * 0.02562 * 23 7 6 26 26 N 1.31285 * 125.50584 * 179.69627 * 2 1 3 27 27 H 1.09006 * 109.47444 * 89.99730 * 1 2 3 28 28 H 1.09001 * 109.47518 * 209.99692 * 1 2 3 29 29 H 1.09008 * 109.47303 * 329.99869 * 1 2 3 30 30 H 1.08004 * 126.16215 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.96713 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.46549 * 295.13140 * 11 10 8 33 33 H 1.09001 * 109.46932 * 55.12739 * 11 10 8 34 34 H 0.97003 * 119.99640 * 180.02562 * 16 15 13 35 35 H 1.09001 * 117.50170 * 359.97438 * 21 12 11 36 36 H 1.08999 * 117.49595 * 145.01999 * 21 12 11 37 37 H 1.09004 * 117.49223 * 214.97870 * 22 12 11 38 38 H 1.09002 * 117.49983 * 359.97070 * 22 12 11 39 39 H 1.09007 * 109.46522 * 83.00502 * 24 23 7 40 40 H 1.09000 * 109.47350 * 203.00345 * 24 23 7 41 41 H 1.08989 * 109.46969 * 323.01031 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.1304 0.0000 4 6 3.6337 0.7057 0.0006 5 7 4.7964 1.3752 0.0013 6 6 5.9424 0.7428 0.0023 7 6 5.9714 -0.6729 0.0031 8 6 7.2569 -1.3953 0.0037 9 8 7.2750 -2.6030 0.1369 10 8 8.4114 -0.7163 -0.1435 11 6 9.6289 -1.5008 -0.2468 12 6 10.8116 -0.5721 -0.5289 13 6 12.1260 -1.2575 -0.8001 14 1 12.8242 -0.8276 -1.5030 15 6 12.4372 -2.4333 -0.1509 16 7 13.4468 -3.1665 -0.5664 17 14 11.4246 -2.9851 1.3188 18 1 10.3779 -3.9377 0.8692 19 1 12.3096 -3.6522 2.3072 20 1 10.7814 -1.8039 1.9482 21 6 10.8521 0.7654 0.2131 22 6 10.5245 0.7287 -1.2817 23 6 4.7769 -1.3667 0.0024 24 6 4.7662 -2.8737 0.0039 25 7 3.6102 -0.6668 0.0003 26 7 2.2694 -1.0687 0.0057 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.9736 2.1556 -0.0004 31 1 6.8667 1.3013 0.0032 32 1 9.7993 -2.0320 0.6897 33 1 9.5298 -2.2201 -1.0597 34 1 13.6655 -3.9940 -0.1098 35 1 10.0360 0.9839 0.9019 36 1 11.8296 1.1497 0.5047 37 1 11.2865 1.0887 -1.9729 38 1 9.4931 0.9225 -1.5764 39 1 4.8876 -3.2368 1.0245 40 1 3.8182 -3.2308 -0.3985 41 1 5.5851 -3.2434 -0.6130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:44 Heat of formation + Delta-G solvation = 54.450982 kcal Electronic energy + Delta-G solvation = -25826.267649 eV Core-core repulsion = 22095.480236 eV Total energy + Delta-G solvation = -3730.787413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65187 -41.72500 -39.51268 -38.74172 -37.16121 -36.02904 -34.40489 -33.62894 -31.02026 -30.31442 -29.41776 -29.24634 -27.24766 -25.15326 -24.21704 -23.04011 -22.73017 -21.33534 -21.09383 -19.94680 -19.08047 -18.43207 -18.14171 -17.94632 -17.52086 -17.32520 -16.56855 -16.14919 -15.69610 -15.32375 -14.98086 -14.82941 -14.61965 -14.49824 -14.33645 -14.23915 -14.11882 -13.76275 -13.58748 -13.39790 -13.31002 -13.00780 -12.71722 -12.39633 -12.34071 -12.04579 -11.93835 -11.82341 -11.62615 -11.41473 -11.15602 -11.04067 -10.66526 -10.62411 -10.25852 -9.17892 -8.43143 -6.38725 -1.01118 -0.59225 0.48521 1.01150 1.24626 1.29134 1.33988 1.45522 1.53431 2.18518 2.20405 2.58712 2.76178 2.79462 2.92349 3.26914 3.41904 3.65343 3.87661 3.93185 3.94937 4.05025 4.11711 4.18536 4.30101 4.32160 4.47741 4.61180 4.66813 4.77512 4.78880 4.79386 4.86776 5.00204 5.01744 5.03629 5.16688 5.25366 5.36996 5.45625 5.59647 5.60602 6.17285 6.21173 6.33717 6.47184 6.61121 7.19315 8.73131 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.003308 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.776685 B = 8463.535575 C = 9211.193737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.128 3.872 3 C -0.256 4.256 4 C 0.238 3.762 5 N -0.484 5.484 6 C 0.238 3.762 7 C -0.249 4.249 8 C 0.526 3.474 9 O -0.522 6.522 10 O -0.333 6.333 11 C 0.100 3.900 12 C -0.032 4.032 13 C -0.486 4.486 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.930 5.930 17 Si 0.926 3.074 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.240 1.240 21 C -0.183 4.183 22 C -0.157 4.157 23 C 0.281 3.719 24 C -0.124 4.124 25 N -0.331 5.331 26 N -0.329 5.329 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.190 0.810 31 H 0.216 0.784 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 7.579 2.628 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 C -0.286 4.286 4 C 0.016 3.984 5 N -0.196 5.196 6 C 0.052 3.948 7 C -0.258 4.258 8 C 0.371 3.629 9 O -0.413 6.413 10 O -0.249 6.249 11 C 0.027 3.973 12 C -0.033 4.033 13 C -0.524 4.524 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.568 5.568 17 Si 0.754 3.246 18 H -0.198 1.198 19 H -0.218 1.218 20 H -0.164 1.164 21 C -0.220 4.220 22 C -0.195 4.195 23 C 0.161 3.839 24 C -0.180 4.180 25 N -0.101 5.101 26 N -0.153 5.153 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.207 0.793 31 H 0.233 0.767 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.602 6.720 2.694 27.570 hybrid contribution 0.724 -0.824 0.483 1.198 sum -25.878 5.896 3.176 26.730 Atomic orbital electron populations 1.20562 0.81819 1.05605 1.05263 1.23225 0.99380 0.89058 0.91636 1.21420 0.86659 1.01844 1.18658 1.21418 0.96124 0.80268 1.00588 1.68280 0.96142 1.36259 1.18873 1.24034 0.97261 0.89418 0.84053 1.19309 0.89462 0.95678 1.21307 1.20320 0.84294 0.85257 0.73034 1.90829 1.87871 1.15763 1.46814 1.86436 1.14883 1.40988 1.82563 1.23183 0.79770 0.93612 1.00729 1.19236 0.91439 0.87656 1.04999 1.20452 1.00095 1.07175 1.24635 0.93214 1.25699 0.96337 0.96011 0.99132 1.70021 1.31396 1.14310 1.41050 0.86297 0.78108 0.79327 0.80915 1.19830 1.21814 1.16446 1.23128 1.01796 1.02468 0.94631 1.22836 1.01807 1.00481 0.94331 1.21270 0.81409 0.97031 0.84152 1.21411 1.05943 0.84386 1.06287 1.47155 1.06153 1.07413 1.49387 1.77831 0.82078 1.22793 1.32632 0.87894 0.89703 0.87099 0.79323 0.76741 0.92652 0.91470 0.92012 0.88354 0.90152 0.90243 0.87399 0.87060 0.88596 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.43 71.23 0.74 0.16 16 2 C 0.13 2.31 7.16 42.79 0.31 2.62 16 3 C -0.26 -5.05 10.83 22.53 0.24 -4.81 16 4 C 0.24 6.03 7.91 133.00 1.05 7.08 16 5 N -0.48 -12.15 10.45 -191.56 -2.00 -14.15 16 6 C 0.24 5.52 10.86 85.66 0.93 6.45 16 7 C -0.25 -6.51 5.88 -20.04 -0.12 -6.63 16 8 C 0.53 16.48 7.81 70.25 0.55 17.03 16 9 O -0.52 -18.47 13.22 19.80 0.26 -18.21 16 10 O -0.33 -11.17 7.83 -56.52 -0.44 -11.61 16 11 C 0.10 4.14 4.10 71.98 0.30 4.44 16 12 C -0.03 -1.43 1.88 -52.93 -0.10 -1.53 16 13 C -0.49 -26.63 9.58 25.60 0.25 -26.39 16 14 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 15 C 0.03 1.58 5.42 84.65 0.46 2.04 16 16 N -0.93 -56.06 13.96 21.44 0.30 -55.76 16 17 Si 0.93 43.75 24.18 68.60 1.66 45.41 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.24 -10.49 6.39 99.48 0.64 -9.86 16 21 C -0.18 -6.85 9.67 30.62 0.30 -6.55 16 22 C -0.16 -5.75 9.63 30.62 0.29 -5.46 16 23 C 0.28 7.17 6.93 41.88 0.29 7.47 16 24 C -0.12 -2.80 8.80 71.24 0.63 -2.17 16 25 N -0.33 -8.56 3.88 -179.14 -0.69 -9.26 16 26 N -0.33 -7.83 12.36 -47.80 -0.59 -8.42 16 27 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.22 3.91 7.69 -2.91 -0.02 3.88 16 32 H 0.06 2.45 2.63 -2.39 -0.01 2.44 16 33 H 0.07 2.92 8.10 -2.39 -0.02 2.90 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.10 3.21 7.85 -2.39 -0.02 3.19 16 36 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 38 H 0.11 3.34 7.47 -2.39 -0.02 3.32 16 39 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.10 1.93 7.96 -2.39 -0.02 1.91 16 41 H 0.11 2.79 5.96 -2.39 -0.01 2.78 16 Total: -1.00 -68.30 344.31 5.60 -62.70 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.00 Total: 15.57 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.11 Total: -6.26 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.99 Total: -87.59 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.18 Total: -29.82 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.66 Total: 45.41 kcal Total: -68.30 5.60 -62.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.149 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds