Wall clock time and date at job start Tue Mar 31 2020 10:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39669 * 120.12434 * 255.29353 * 3 2 1 5 5 C 1.37957 * 119.96079 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.20780 * 359.73089 * 5 4 3 7 7 C 1.38823 * 120.25300 * 0.54500 * 6 5 4 8 8 O 1.35908 * 119.98044 * 179.72403 * 7 6 5 9 9 C 1.42896 * 117.00134 * 359.72877 * 8 7 6 10 10 C 1.50696 * 109.47042 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00323 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00050 * 180.02562 * 10 9 8 13 13 C 1.46967 * 120.59522 * 180.02562 * 12 10 9 14 14 C 1.53374 * 108.63231 * 235.25231 * 13 12 10 15 15 N 1.46972 * 108.63217 * 310.57203 * 14 13 12 16 16 C 1.36935 * 120.59045 * 235.20705 * 15 14 13 17 17 H 1.08002 * 119.99725 * 151.84492 * 16 15 14 18 18 C 1.38804 * 120.00405 * 331.57419 * 16 15 14 19 19 N 1.31622 * 119.99787 * 342.82520 * 18 16 15 20 20 Si 1.86800 * 120.00346 * 162.82771 * 18 16 15 21 21 H 1.48493 * 109.47374 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.47349 * 210.00137 * 20 18 16 23 23 H 1.48504 * 109.47003 * 329.99893 * 20 18 16 24 24 C 1.46962 * 118.81330 * 55.48066 * 15 14 13 25 25 C 1.46958 * 120.59366 * 0.02562 * 12 10 9 26 26 C 1.38474 * 120.03542 * 359.45291 * 7 6 5 27 27 H 1.08003 * 120.02115 * 359.95992 * 4 3 2 28 28 H 1.07995 * 119.89882 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.87448 * 180.27000 * 6 5 4 30 30 H 1.09000 * 109.46948 * 59.99889 * 9 8 7 31 31 H 1.09000 * 109.47581 * 299.99785 * 9 8 7 32 32 H 1.08996 * 109.60899 * 115.50126 * 13 12 10 33 33 H 1.09006 * 109.74993 * 355.07456 * 13 12 10 34 34 H 1.09002 * 109.60640 * 190.83592 * 14 13 12 35 35 H 1.08999 * 109.75615 * 70.39807 * 14 13 12 36 36 H 0.96999 * 119.99847 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.60973 * 64.26416 * 24 15 14 38 38 H 1.08995 * 109.61395 * 184.77560 * 24 15 14 39 39 H 1.09002 * 109.60988 * 244.49705 * 25 12 10 40 40 H 1.09006 * 109.61277 * 4.83592 * 25 12 10 41 41 H 1.08003 * 120.10777 * 180.24796 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.3076 1.1685 5 6 4.6484 0.3067 1.1648 6 6 5.3409 -0.0028 0.0085 7 6 4.6532 -0.3037 -1.1593 8 8 5.3394 -0.6016 -2.2940 9 6 6.7660 -0.5805 -2.2139 10 6 7.3498 -0.9339 -3.5574 11 8 6.6165 -1.1802 -4.4915 12 7 8.6870 -0.9774 -3.7208 13 6 9.2704 -1.3200 -5.0255 14 6 10.2247 -2.5061 -4.8392 15 7 11.1255 -2.2121 -3.7157 16 6 12.4840 -2.2572 -3.8816 17 1 13.1237 -1.6403 -3.2677 18 6 13.0394 -3.0997 -4.8347 19 7 12.3264 -4.0854 -5.3372 20 14 14.7986 -2.8346 -5.4043 21 1 15.7215 -3.6126 -4.5393 22 1 14.9373 -3.2894 -6.8111 23 1 15.1356 -1.3911 -5.3152 24 6 10.5422 -1.8749 -2.4097 25 6 9.5877 -0.6829 -2.5976 26 6 3.2685 -0.3059 -1.1673 27 1 2.7311 0.5458 2.0743 28 1 5.1892 0.5439 2.0690 29 1 6.4209 -0.0062 0.0128 30 1 7.0989 -1.3056 -1.4713 31 1 7.0989 0.4160 -1.9235 32 1 9.8217 -0.4646 -5.4157 33 1 8.4784 -1.5938 -5.7227 34 1 10.8089 -2.6518 -5.7479 35 1 9.6530 -3.4086 -4.6231 36 1 12.7144 -4.6739 -6.0035 37 1 9.9902 -2.7317 -2.0233 38 1 11.3358 -1.6037 -1.7135 39 1 10.1616 0.2178 -2.8153 40 1 9.0035 -0.5338 -1.6895 41 1 2.7323 -0.5438 -2.0741 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750862985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:54 Heat of formation + Delta-G solvation = 4.268845 kcal Electronic energy + Delta-G solvation = -25009.887789 eV Core-core repulsion = 21276.924315 eV Total energy + Delta-G solvation = -3732.963474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57546 -40.69646 -38.95007 -38.25300 -37.23046 -35.66894 -33.08789 -32.51436 -32.23911 -31.30884 -29.52754 -28.22630 -25.52900 -24.90977 -24.29577 -23.44114 -22.27605 -20.55571 -20.04706 -18.89689 -18.02380 -17.60560 -17.40183 -17.19169 -16.85987 -16.60712 -16.33751 -15.84376 -15.45862 -15.23119 -15.05733 -15.00967 -14.94751 -14.73149 -14.31660 -14.03455 -13.96611 -13.58712 -13.35067 -13.24771 -13.12163 -12.69352 -12.62291 -12.46032 -12.29688 -12.05528 -12.02855 -11.98245 -11.85051 -11.65882 -10.80636 -10.58883 -10.00865 -9.85494 -9.27755 -8.64340 -7.86849 -5.35065 -0.25700 0.41949 1.38579 1.48682 1.52306 1.53228 1.60657 1.65249 1.90540 2.44541 2.53973 2.87914 2.91675 3.28928 3.40265 3.62151 3.82342 3.99399 4.13048 4.14156 4.19363 4.26267 4.29509 4.35419 4.41610 4.53554 4.56875 4.68514 4.81634 4.86573 4.91196 5.09710 5.19684 5.29419 5.35382 5.40538 5.45423 5.60911 5.64496 5.69754 6.29633 6.37358 6.37675 6.48140 7.10187 7.12152 7.82085 8.34385 9.18425 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.002333 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.471184 B =12000.677255 C =12483.548264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.280 3.720 3 C -0.003 4.003 4 C -0.099 4.099 5 C -0.069 4.069 6 C -0.171 4.171 7 C 0.112 3.888 8 O -0.319 6.319 9 C 0.049 3.951 10 C 0.504 3.496 11 O -0.583 6.583 12 N -0.597 5.597 13 C 0.104 3.896 14 C 0.169 3.831 15 N -0.610 5.610 16 C -0.258 4.258 17 H 0.079 0.921 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.266 1.266 24 C 0.122 3.878 25 C 0.094 3.906 26 C -0.117 4.117 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.068 0.932 35 H -0.008 1.008 36 H 0.249 0.751 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 12.265 16.469 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.035 4.035 3 C -0.006 4.006 4 C -0.119 4.119 5 C -0.086 4.086 6 C -0.190 4.190 7 C 0.067 3.933 8 O -0.233 6.233 9 C -0.029 4.029 10 C 0.293 3.707 11 O -0.463 6.463 12 N -0.330 5.330 13 C -0.021 4.021 14 C 0.042 3.958 15 N -0.333 5.333 16 C -0.388 4.388 17 H 0.096 0.904 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.191 1.191 24 C -0.004 4.004 25 C -0.029 4.029 26 C -0.139 4.139 27 H 0.174 0.826 28 H 0.193 0.807 29 H 0.183 0.817 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.010 0.990 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.272 11.982 15.690 23.245 hybrid contribution 1.334 -0.695 -1.118 1.874 sum -10.937 11.287 14.573 21.433 Atomic orbital electron populations 1.81281 1.13370 1.10306 1.08826 1.25869 0.92771 0.92422 0.92402 1.15657 0.83122 1.06314 0.95510 1.21435 0.95059 0.98881 0.96570 1.21323 0.92977 0.95601 0.98722 1.21938 1.02543 1.02612 0.91877 1.18918 0.91208 0.97067 0.86112 1.86137 1.19269 1.85070 1.32812 1.22698 0.79138 1.06234 0.94784 1.20800 0.81998 0.77227 0.90664 1.90696 1.59992 1.51250 1.44372 1.48053 1.04840 1.67429 1.12653 1.22095 0.96247 0.98915 0.84801 1.20873 0.90208 0.91694 0.93022 1.44278 1.02090 1.81277 1.05678 1.19562 0.83158 1.17131 1.18938 0.90352 1.25855 1.01494 0.95265 1.02274 1.70179 1.38562 1.17421 1.32252 0.85291 0.80301 0.78208 0.76701 1.21259 1.22607 1.19058 1.21647 0.96104 0.94960 0.87713 1.22648 0.92596 0.98880 0.88772 1.20339 0.91727 1.03420 0.98375 0.82557 0.80714 0.81674 0.85699 0.84755 0.91189 0.91063 0.91423 0.99015 0.94183 0.96279 0.89686 0.89915 0.85468 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.17 18.54 19.00 0.35 -10.82 16 2 C 0.28 5.30 15.33 88.33 1.35 6.65 16 3 C 0.00 -0.04 5.73 -21.37 -0.12 -0.16 16 4 C -0.10 -0.81 9.75 22.55 0.22 -0.59 16 5 C -0.07 -0.37 10.03 22.22 0.22 -0.15 16 6 C -0.17 -1.50 9.03 22.42 0.20 -1.29 16 7 C 0.11 1.87 6.68 22.47 0.15 2.02 16 8 O -0.32 -7.38 9.67 -73.48 -0.71 -8.09 16 9 C 0.05 0.87 3.56 71.23 0.25 1.13 16 10 C 0.50 15.25 7.77 87.65 0.68 15.94 16 11 O -0.58 -23.69 15.91 16.00 0.25 -23.44 16 12 N -0.60 -18.27 2.95 -817.06 -2.41 -20.68 16 13 C 0.10 3.94 6.59 86.42 0.57 4.51 16 14 C 0.17 7.88 5.51 86.41 0.48 8.36 16 15 N -0.61 -27.61 2.96 -697.26 -2.06 -29.67 16 16 C -0.26 -12.90 9.57 84.03 0.80 -12.10 16 17 H 0.08 3.69 7.89 -2.91 -0.02 3.66 16 18 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 19 N -0.94 -53.87 11.20 21.65 0.24 -53.63 16 20 Si 0.97 42.54 29.59 68.60 2.03 44.57 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 C 0.12 3.98 6.70 86.58 0.58 4.56 16 25 C 0.09 2.17 6.52 86.58 0.56 2.73 16 26 C -0.12 -2.04 9.69 22.64 0.22 -1.82 16 27 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 28 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 29 H 0.17 0.49 6.28 -2.91 -0.02 0.47 16 30 H 0.13 1.49 7.22 -2.39 -0.02 1.48 16 31 H 0.13 1.29 7.44 -2.39 -0.02 1.27 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.07 2.85 7.00 -2.38 -0.02 2.83 16 34 H 0.07 3.60 6.00 -2.39 -0.01 3.58 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.13 1.49 5.91 -2.38 -0.01 1.47 16 41 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.90 350.23 5.35 -71.55 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.06 Total: 2.84 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 6.59 Total: 27.37 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.88 Total: -114.80 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.46 Total: -31.52 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -76.90 5.35 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750862985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.819 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds