Wall clock time and date at job start Tue Mar 31 2020 10:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00333 * 2 1 4 4 H 1.48491 * 109.47085 * 269.99843 * 3 2 1 5 5 H 1.48504 * 109.46969 * 29.99779 * 3 2 1 6 6 H 1.48495 * 109.47162 * 149.99452 * 3 2 1 7 7 C 1.37882 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99911 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00013 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99804 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.46826 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.94711 * 90.00289 * 12 11 10 14 14 C 1.38139 * 120.05923 * 180.02562 * 13 12 11 15 15 C 1.38737 * 119.94524 * 359.97438 * 14 13 12 16 16 O 1.35898 * 120.05945 * 180.02562 * 15 14 13 17 17 C 1.42895 * 117.00208 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47443 * 179.97438 * 17 16 15 19 19 C 1.38227 * 120.01020 * 0.02562 * 18 17 16 20 20 C 1.38219 * 120.02402 * 180.27931 * 19 18 17 21 21 C 1.38271 * 120.05279 * 359.48356 * 20 19 18 22 22 C 1.38179 * 120.02498 * 0.51287 * 21 20 19 23 23 C 1.38435 * 120.01563 * 180.02562 * 18 17 16 24 24 F 1.35097 * 120.02437 * 359.95787 * 23 18 17 25 25 C 1.38732 * 119.88381 * 0.28169 * 15 14 13 26 26 C 1.38149 * 119.94559 * 359.46555 * 25 15 14 27 27 H 0.97003 * 119.99798 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47115 * 59.99846 * 9 7 2 29 29 H 1.08999 * 109.47058 * 300.00030 * 9 7 2 30 30 H 1.00902 * 110.99664 * 303.95242 * 10 9 7 31 31 H 1.09002 * 109.47076 * 60.00259 * 11 10 9 32 32 H 1.08996 * 109.47316 * 299.99937 * 11 10 9 33 33 H 1.08001 * 119.97023 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.03475 * 179.97438 * 14 13 12 35 35 H 1.09000 * 109.47472 * 59.99820 * 17 16 15 36 36 H 1.09002 * 109.46850 * 299.99505 * 17 16 15 37 37 H 1.08002 * 119.98464 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.97200 * 179.72235 * 20 19 18 39 39 H 1.07997 * 119.98711 * 180.25982 * 21 20 19 40 40 H 1.07994 * 120.01414 * 179.76315 * 22 21 20 41 41 H 1.08007 * 120.02681 * 179.72101 * 25 15 14 42 42 H 1.07993 * 119.97088 * 180.23135 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 5.4695 -2.6184 0.0022 12 6 5.9337 -4.0521 0.0027 13 6 6.1463 -4.7092 -1.1951 14 6 6.5713 -6.0236 -1.1973 15 6 6.7853 -6.6843 0.0038 16 8 7.2039 -7.9772 0.0043 17 6 7.4031 -8.5941 1.2777 18 6 7.8628 -10.0157 1.0809 19 6 8.0262 -10.5189 -0.1961 20 6 8.4422 -11.8245 -0.3770 21 6 8.7056 -12.6255 0.7189 22 6 8.5430 -12.1247 1.9964 23 6 8.1215 -10.8182 2.1788 24 9 7.9629 -10.3272 3.4274 25 6 6.5661 -6.0244 1.2043 26 6 6.1461 -4.7083 1.2011 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8751 -0.6806 -0.8888 30 1 3.6252 -3.0949 0.7838 31 1 5.8465 -2.1138 0.8918 32 1 5.8464 -2.1152 -0.8882 33 1 5.9800 -4.1944 -2.1298 34 1 6.7368 -6.5366 -2.1331 35 1 6.4660 -8.5895 1.8344 36 1 8.1594 -8.0412 1.8349 37 1 7.8240 -9.8931 -1.0529 38 1 8.5654 -12.2182 -1.3752 39 1 9.0347 -13.6442 0.5763 40 1 8.7451 -12.7516 2.8522 41 1 6.7276 -6.5380 2.1406 42 1 5.9790 -4.1931 2.1354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754822216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:56 Heat of formation + Delta-G solvation = -49.754901 kcal Electronic energy + Delta-G solvation = -23893.874379 eV Core-core repulsion = 20138.648298 eV Total energy + Delta-G solvation = -3755.226081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99960 -41.30207 -39.99790 -38.79892 -36.82341 -34.60271 -33.40079 -31.97390 -31.70434 -31.50356 -29.05476 -27.68917 -25.56925 -23.97707 -23.71247 -23.08836 -22.49099 -21.84822 -19.30659 -18.98858 -18.61458 -17.53374 -17.27960 -17.11895 -16.92361 -16.47567 -16.44931 -16.08019 -15.79053 -15.49789 -15.30006 -15.06783 -14.66517 -14.54427 -14.37054 -14.19356 -13.94260 -13.76761 -13.48908 -13.22689 -13.17815 -12.84152 -12.54757 -12.45854 -12.10049 -12.04185 -12.03085 -11.82425 -11.73644 -11.48586 -10.81215 -9.98411 -9.92702 -9.68720 -9.25909 -9.00757 -8.30323 -6.35331 0.08754 0.21733 0.40297 0.41577 1.35738 1.37370 1.48421 1.98852 2.34158 2.58185 2.74985 3.03606 3.21956 3.46343 3.68566 3.82519 3.86397 3.89925 3.98715 4.04607 4.14530 4.16222 4.32585 4.37467 4.41411 4.44793 4.62114 4.71778 4.75966 4.83072 4.86614 5.06289 5.06786 5.10101 5.14338 5.25595 5.34526 5.36946 5.46223 5.50737 5.73599 5.78673 5.89074 5.93820 6.36712 6.54081 6.63654 6.74878 7.29570 8.86453 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.001921 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.477140 B =14575.974209 C =14811.523492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.035 0.965 9 C 0.174 3.826 10 N -0.685 5.685 11 C 0.099 3.901 12 C -0.120 4.120 13 C -0.066 4.066 14 C -0.154 4.154 15 C 0.117 3.883 16 O -0.314 6.314 17 C 0.103 3.897 18 C -0.140 4.140 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.087 4.087 22 C -0.155 4.155 23 C 0.083 3.917 24 F -0.147 7.147 25 C -0.209 4.209 26 C -0.080 4.080 27 H 0.268 0.732 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.335 0.665 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.894 -25.121 1.863 34.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.053 0.947 9 C 0.045 3.955 10 N -0.315 5.315 11 C -0.029 4.029 12 C -0.121 4.121 13 C -0.085 4.085 14 C -0.172 4.172 15 C 0.072 3.928 16 O -0.228 6.228 17 C 0.028 3.972 18 C -0.141 4.141 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.104 4.104 22 C -0.173 4.173 23 C 0.063 3.937 24 F -0.126 7.126 25 C -0.228 4.228 26 C -0.099 4.099 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.152 0.848 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.160 0.840 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 23.733 -25.175 1.072 34.614 hybrid contribution -0.308 1.344 1.485 2.027 sum 23.425 -23.830 2.557 33.513 Atomic orbital electron populations 1.70062 1.08239 1.28267 1.52247 1.25926 0.95690 1.03453 0.94080 0.85610 0.79275 0.78081 0.79307 1.18962 1.20657 1.17279 1.21344 0.91483 0.93394 1.50615 0.94695 1.19783 0.93626 0.87072 0.95000 1.60438 1.06523 1.14692 1.49884 1.20870 0.88123 0.92774 1.01143 1.19808 1.02208 0.96277 0.93815 1.21014 0.95628 0.93536 0.98277 1.20572 1.05157 0.94716 0.96797 1.19049 0.95889 0.83316 0.94577 1.85941 1.82154 1.23333 1.31369 1.21356 1.01418 0.90141 0.84264 1.19701 1.05250 0.94978 0.94188 1.21101 0.96761 0.96448 0.95860 1.21628 0.98653 0.93162 1.01015 1.21485 0.96804 1.01460 0.90685 1.21433 1.02145 0.93225 1.00527 1.17644 1.03857 0.93916 0.78241 1.91479 1.93481 1.88322 1.39332 1.21356 1.07542 0.96314 0.97561 1.21021 0.96793 0.94078 0.97992 0.92331 0.99303 0.95426 0.84773 0.94541 0.90349 0.84494 0.83682 0.90335 0.89880 0.84194 0.82606 0.81731 0.82679 0.83994 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -31.31 9.87 25.60 0.25 -31.06 16 8 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.17 8.38 4.51 85.55 0.39 8.76 16 10 N -0.68 -28.54 6.48 -521.99 -3.38 -31.92 16 11 C 0.10 3.24 5.81 85.56 0.50 3.74 16 12 C -0.12 -3.48 5.39 -19.85 -0.11 -3.58 16 13 C -0.07 -1.77 9.69 22.25 0.22 -1.55 16 14 C -0.15 -3.74 9.99 22.37 0.22 -3.52 16 15 C 0.12 2.82 6.69 22.51 0.15 2.97 16 16 O -0.31 -6.87 8.62 -92.41 -0.80 -7.66 16 17 C 0.10 1.93 4.71 71.24 0.34 2.26 16 18 C -0.14 -2.48 5.89 -19.82 -0.12 -2.59 16 19 C -0.08 -1.27 9.38 22.26 0.21 -1.06 16 20 C -0.13 -1.30 10.04 22.27 0.22 -1.08 16 21 C -0.09 -0.75 10.04 22.26 0.22 -0.53 16 22 C -0.15 -1.84 10.03 22.31 0.22 -1.61 16 23 C 0.08 1.39 7.25 22.38 0.16 1.56 16 24 F -0.15 -2.81 16.80 44.97 0.76 -2.05 16 25 C -0.21 -4.94 9.04 22.37 0.20 -4.74 16 26 C -0.08 -2.09 9.69 22.26 0.22 -1.87 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H -0.01 -0.50 7.20 -2.39 -0.02 -0.52 16 29 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 30 H 0.34 13.96 8.72 -89.69 -0.78 13.18 16 31 H 0.04 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.08 1.45 7.65 -2.39 -0.02 1.43 16 36 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 37 H 0.14 2.14 7.01 -2.91 -0.02 2.11 16 38 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.14 2.74 6.30 -2.91 -0.02 2.72 16 42 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.07 360.56 2.72 -67.35 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.20 Total: 20.89 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 3.76 Total: -33.09 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.08 Total: -91.56 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.80 Total: -7.66 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.76 Total: -2.05 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -70.07 2.72 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754822216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.591 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds