Wall clock time and date at job start Tue Mar 31 2020 10:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47238 * 240.00601 * 3 2 1 5 5 H 1.48494 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46981 * 120.00448 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.94417 * 269.72936 * 12 11 10 14 14 C 1.38141 * 120.05503 * 179.72655 * 13 12 11 15 15 C 1.38736 * 119.94462 * 0.56421 * 14 13 12 16 16 O 1.35902 * 120.05488 * 179.68207 * 15 14 13 17 17 C 1.42904 * 117.00207 * 0.02562 * 16 15 14 18 18 C 1.50693 * 109.47165 * 179.97438 * 17 16 15 19 19 C 1.38267 * 119.98871 * 269.73054 * 18 17 16 20 20 C 1.38223 * 120.05228 * 179.72566 * 19 18 17 21 21 C 1.38220 * 120.02305 * 0.54621 * 20 19 18 22 22 C 1.38433 * 119.97426 * 359.72718 * 21 20 19 23 23 F 1.35102 * 120.02475 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98625 * 89.99975 * 18 17 16 25 25 C 1.38725 * 119.88670 * 359.70982 * 15 14 13 26 26 C 1.38147 * 119.94395 * 359.97438 * 25 15 14 27 27 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 29 29 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 30 30 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 31 31 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 32 32 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 33 33 H 1.08003 * 119.97138 * 359.97264 * 13 12 11 34 34 H 1.08003 * 120.02895 * 180.24900 * 14 13 12 35 35 H 1.09001 * 109.46840 * 300.00391 * 17 16 15 36 36 H 1.09005 * 109.46604 * 60.00164 * 17 16 15 37 37 H 1.07998 * 119.97489 * 359.97438 * 19 18 17 38 38 H 1.08005 * 119.98917 * 180.27082 * 20 19 18 39 39 H 1.08006 * 120.01308 * 179.70550 * 21 20 19 40 40 H 1.07998 * 120.01588 * 359.97438 * 24 18 17 41 41 H 1.08003 * 120.02878 * 179.97438 * 25 15 14 42 42 H 1.08001 * 119.96679 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9722 -6.5422 -1.2002 14 6 3.9018 -7.5640 -1.2035 15 6 4.3679 -8.0802 -0.0031 16 8 5.2776 -9.0898 -0.0037 17 6 5.7113 -9.5715 -1.2773 18 6 6.7119 -10.6810 -1.0805 19 6 8.0606 -10.3884 -0.9963 20 6 8.9790 -11.4044 -0.8101 21 6 8.5510 -12.7155 -0.7193 22 6 7.2014 -13.0103 -0.8091 23 9 6.7818 -14.2914 -0.7199 24 6 6.2816 -11.9909 -0.9899 25 6 3.9032 -7.5643 1.1980 26 6 2.9785 -6.5380 1.1959 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8400 -3.5483 -0.7836 31 1 0.8815 -4.9816 0.8895 32 1 0.8795 -4.9814 -0.8905 33 1 2.6052 -6.1436 -2.1345 34 1 4.2617 -7.9642 -2.1399 35 1 4.8538 -9.9495 -1.8340 36 1 6.1762 -8.7579 -1.8342 37 1 8.3964 -9.3647 -1.0720 38 1 10.0320 -11.1743 -0.7401 39 1 9.2692 -13.5098 -0.5786 40 1 5.2285 -12.2197 -1.0596 41 1 4.2642 -7.9646 2.1339 42 1 2.6168 -6.1358 2.1307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754822631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:13 Heat of formation + Delta-G solvation = -36.367464 kcal Electronic energy + Delta-G solvation = -23602.838586 eV Core-core repulsion = 19848.193028 eV Total energy + Delta-G solvation = -3754.645558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.30614 -40.39587 -39.38423 -37.71753 -35.07284 -32.85640 -32.38280 -31.06096 -30.89982 -30.13671 -27.31043 -26.49259 -24.03872 -23.27852 -22.98449 -21.82364 -21.41019 -20.76538 -18.30531 -17.88487 -17.01352 -16.65999 -16.56446 -16.02529 -15.93543 -15.60244 -15.23694 -14.68451 -14.53904 -14.34636 -14.23824 -13.78473 -13.72319 -13.44738 -13.21769 -12.93969 -12.57715 -12.50542 -12.41543 -12.13834 -11.65906 -11.51218 -11.32379 -11.14616 -10.91500 -10.76918 -10.65713 -10.61335 -9.92363 -9.55876 -9.21649 -9.19158 -8.88825 -8.48401 -8.03394 -7.29137 -6.03363 -4.05480 0.55020 0.70134 1.45879 1.52584 2.79550 3.33701 3.37451 3.39265 3.40770 3.76556 3.86376 4.16174 4.23848 4.43647 4.52859 4.65117 4.72899 4.78723 4.92011 4.92729 5.00509 5.16020 5.29424 5.32359 5.43574 5.51531 5.54439 5.59909 5.62174 5.74093 5.78400 5.94706 5.94800 6.16017 6.24136 6.35416 6.37296 6.45507 6.84610 6.88824 7.23228 7.36449 7.40721 7.77623 8.11745 8.38258 8.59628 9.03483 9.59354 11.07596 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.001799 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.690844 B =15556.276918 C =16071.053047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.097 3.903 12 C -0.100 4.100 13 C -0.077 4.077 14 C -0.209 4.209 15 C 0.115 3.885 16 O -0.311 6.311 17 C 0.101 3.899 18 C -0.063 4.063 19 C -0.105 4.105 20 C -0.093 4.093 21 C -0.146 4.146 22 C 0.095 3.905 23 F -0.139 7.139 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.060 4.060 27 H 0.262 0.738 28 H -0.013 1.013 29 H 0.029 0.971 30 H 0.329 0.671 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.979 -26.211 -3.587 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.100 4.100 13 C -0.096 4.096 14 C -0.227 4.227 15 C 0.071 3.929 16 O -0.226 6.226 17 C 0.026 3.974 18 C -0.064 4.064 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.165 4.165 22 C 0.075 3.925 23 F -0.117 7.117 24 C -0.149 4.149 25 C -0.169 4.169 26 C -0.078 4.078 27 H 0.071 0.929 28 H 0.004 0.996 29 H 0.047 0.953 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.950 -26.210 -2.736 30.298 hybrid contribution -0.048 0.686 -1.144 1.334 sum 14.902 -25.524 -3.880 29.810 Atomic orbital electron populations 1.69950 1.06069 1.26913 1.50814 1.24991 0.94890 0.99364 0.95332 0.86530 0.79407 0.82616 0.78660 1.20280 1.21343 1.20139 1.21148 0.93509 0.90213 1.50478 0.91993 1.19584 0.90607 0.87308 0.95850 1.60730 1.21090 1.00611 1.49024 1.20837 0.93253 0.88606 1.00560 1.19979 0.99573 0.97733 0.92735 1.20874 0.95644 0.95055 0.98009 1.21118 1.03140 1.01932 0.96544 1.18919 0.90626 0.88971 0.94396 1.86105 1.56860 1.49306 1.30316 1.21523 0.96117 0.94605 0.85205 1.19349 0.93954 0.92813 1.00244 1.21214 0.92179 1.00205 0.98739 1.21047 1.00330 0.91536 0.98181 1.21247 0.94085 0.98393 1.02783 1.17656 0.92969 0.78769 1.03060 1.91518 1.90834 1.35694 1.93689 1.21082 1.00211 0.91783 1.01841 1.20399 1.00921 0.99634 0.95951 1.20907 0.94743 0.93804 0.98383 0.92851 0.99558 0.95312 0.85445 0.90912 0.95514 0.85998 0.85914 0.90882 0.90596 0.84823 0.84538 0.84527 0.84415 0.85505 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.07 5.44 -4.97 -0.03 5.04 16 10 N -0.68 -14.74 6.48 -116.33 -0.75 -15.50 16 11 C 0.10 1.72 5.81 -4.97 -0.03 1.69 16 12 C -0.10 -1.52 5.39 -104.60 -0.56 -2.08 16 13 C -0.08 -1.05 9.69 -39.61 -0.38 -1.43 16 14 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 15 C 0.12 1.47 6.69 -39.22 -0.26 1.20 16 16 O -0.31 -3.61 10.12 -19.43 -0.20 -3.81 16 17 C 0.10 0.84 4.87 36.00 0.18 1.02 16 18 C -0.06 -0.51 5.51 -104.64 -0.58 -1.09 16 19 C -0.11 -0.73 9.70 -39.58 -0.38 -1.12 16 20 C -0.09 -0.56 10.04 -39.59 -0.40 -0.95 16 21 C -0.15 -0.98 10.03 -39.52 -0.40 -1.38 16 22 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 23 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 24 C -0.13 -1.07 9.68 -39.52 -0.38 -1.45 16 25 C -0.15 -1.98 9.99 -39.43 -0.39 -2.38 16 26 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.33 6.85 8.72 -39.29 -0.34 6.51 16 31 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 32 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.12 1.16 6.30 -52.48 -0.33 0.83 16 35 H 0.07 0.53 7.60 -51.93 -0.39 0.13 16 36 H 0.08 0.55 7.60 -51.93 -0.39 0.15 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -31.64 366.86 -10.39 -42.03 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.65 Total: 2.40 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -5.07 Total: -20.02 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.02 Total: -41.60 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -10.39 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754822631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.663 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds