Wall clock time and date at job start Tue Mar 31 2020 10:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47238 * 240.00601 * 3 2 1 5 5 H 1.48494 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46981 * 120.00448 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.94417 * 269.72936 * 12 11 10 14 14 C 1.38141 * 120.05503 * 179.72655 * 13 12 11 15 15 C 1.38736 * 119.94462 * 0.56421 * 14 13 12 16 16 O 1.35902 * 120.05488 * 179.68207 * 15 14 13 17 17 C 1.42904 * 117.00207 * 0.02562 * 16 15 14 18 18 C 1.50693 * 109.47165 * 179.97438 * 17 16 15 19 19 C 1.38267 * 119.98871 * 269.73054 * 18 17 16 20 20 C 1.38223 * 120.05228 * 179.72566 * 19 18 17 21 21 C 1.38220 * 120.02305 * 0.54621 * 20 19 18 22 22 C 1.38433 * 119.97426 * 359.72718 * 21 20 19 23 23 F 1.35102 * 120.02475 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98625 * 89.99975 * 18 17 16 25 25 C 1.38725 * 119.88670 * 359.70982 * 15 14 13 26 26 C 1.38147 * 119.94395 * 359.97438 * 25 15 14 27 27 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 29 29 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 30 30 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 31 31 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 32 32 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 33 33 H 1.08003 * 119.97138 * 359.97264 * 13 12 11 34 34 H 1.08003 * 120.02895 * 180.24900 * 14 13 12 35 35 H 1.09001 * 109.46840 * 300.00391 * 17 16 15 36 36 H 1.09005 * 109.46604 * 60.00164 * 17 16 15 37 37 H 1.07998 * 119.97489 * 359.97438 * 19 18 17 38 38 H 1.08005 * 119.98917 * 180.27082 * 20 19 18 39 39 H 1.08006 * 120.01308 * 179.70550 * 21 20 19 40 40 H 1.07998 * 120.01588 * 359.97438 * 24 18 17 41 41 H 1.08003 * 120.02878 * 179.97438 * 25 15 14 42 42 H 1.08001 * 119.96679 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9722 -6.5422 -1.2002 14 6 3.9018 -7.5640 -1.2035 15 6 4.3679 -8.0802 -0.0031 16 8 5.2776 -9.0898 -0.0037 17 6 5.7113 -9.5715 -1.2773 18 6 6.7119 -10.6810 -1.0805 19 6 8.0606 -10.3884 -0.9963 20 6 8.9790 -11.4044 -0.8101 21 6 8.5510 -12.7155 -0.7193 22 6 7.2014 -13.0103 -0.8091 23 9 6.7818 -14.2914 -0.7199 24 6 6.2816 -11.9909 -0.9899 25 6 3.9032 -7.5643 1.1980 26 6 2.9785 -6.5380 1.1959 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8400 -3.5483 -0.7836 31 1 0.8815 -4.9816 0.8895 32 1 0.8795 -4.9814 -0.8905 33 1 2.6052 -6.1436 -2.1345 34 1 4.2617 -7.9642 -2.1399 35 1 4.8538 -9.9495 -1.8340 36 1 6.1762 -8.7579 -1.8342 37 1 8.3964 -9.3647 -1.0720 38 1 10.0320 -11.1743 -0.7401 39 1 9.2692 -13.5098 -0.5786 40 1 5.2285 -12.2197 -1.0596 41 1 4.2642 -7.9646 2.1339 42 1 2.6168 -6.1358 2.1307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754822631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:12 Heat of formation + Delta-G solvation = -53.778637 kcal Electronic energy + Delta-G solvation = -23603.593591 eV Core-core repulsion = 19848.193028 eV Total energy + Delta-G solvation = -3755.400563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.94455 -41.25689 -40.05989 -38.72169 -36.74788 -34.58786 -33.32085 -31.93895 -31.62321 -31.42976 -28.69347 -27.62574 -25.58057 -23.95951 -23.72668 -23.44782 -22.50362 -21.87058 -19.21077 -18.64373 -18.47404 -17.62740 -17.19115 -17.04858 -16.74352 -16.63733 -16.35468 -16.30369 -15.87341 -15.37779 -15.20567 -14.99018 -14.54958 -14.40944 -14.32159 -14.30716 -13.67957 -13.43839 -13.33773 -13.26537 -13.04156 -12.79158 -12.70582 -12.57852 -12.29071 -12.07041 -11.93254 -11.79632 -11.71319 -11.30338 -10.65151 -10.09163 -9.91414 -9.75257 -9.21534 -8.97588 -8.21575 -6.33141 -0.00062 0.16365 0.43531 0.45283 1.42084 1.45756 1.53789 2.11919 2.40841 2.75937 2.79471 3.11338 3.18963 3.58129 3.73066 3.75629 3.88835 3.94488 4.04117 4.07606 4.15189 4.20884 4.25508 4.38803 4.45229 4.47930 4.65420 4.75100 4.80199 4.83062 5.02706 5.07919 5.08881 5.14088 5.24549 5.28494 5.32033 5.40497 5.42077 5.61001 5.77218 5.81702 5.85442 6.02120 6.42823 6.46234 6.71005 6.88680 7.37657 8.89433 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.001799 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.690844 B =15556.276918 C =16071.053047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.080 4.080 14 C -0.203 4.203 15 C 0.120 3.880 16 O -0.321 6.321 17 C 0.095 3.905 18 C -0.076 4.076 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.146 4.146 22 C 0.072 3.928 23 F -0.150 7.150 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.068 4.068 27 H 0.265 0.735 28 H -0.037 1.037 29 H 0.002 0.998 30 H 0.334 0.666 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.459 -26.513 -4.271 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.313 5.313 11 C -0.027 4.027 12 C -0.121 4.121 13 C -0.098 4.098 14 C -0.222 4.222 15 C 0.075 3.925 16 O -0.236 6.236 17 C 0.021 3.979 18 C -0.076 4.076 19 C -0.127 4.127 20 C -0.108 4.108 21 C -0.165 4.165 22 C 0.053 3.947 23 F -0.128 7.128 24 C -0.160 4.160 25 C -0.177 4.177 26 C -0.086 4.086 27 H 0.074 0.926 28 H -0.019 1.019 29 H 0.020 0.980 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.445 -26.545 -3.427 31.949 hybrid contribution -0.755 0.629 -0.941 1.360 sum 16.690 -25.916 -4.367 31.133 Atomic orbital electron populations 1.70080 1.07770 1.28081 1.51385 1.25959 0.95814 1.03384 0.94554 0.85371 0.78094 0.77582 0.79158 1.19038 1.20761 1.19398 1.21512 0.93804 0.91425 1.50808 0.91795 1.19240 0.90658 0.88797 0.93393 1.60599 1.20386 1.01010 1.49322 1.20790 0.93925 0.87732 1.00283 1.19760 1.00370 0.97900 0.94041 1.21019 0.95773 0.95338 0.97687 1.21368 1.02142 1.01002 0.97660 1.19023 0.90298 0.88820 0.94381 1.86102 1.56316 1.48724 1.32424 1.21766 0.96837 0.95215 0.84120 1.19405 0.94507 0.92496 1.01228 1.21501 0.91910 1.01295 0.97987 1.21394 1.01645 0.90851 0.96912 1.21542 0.93700 0.99451 1.01759 1.17921 0.93916 0.78434 1.04403 1.91486 1.91045 1.36366 1.93940 1.21191 1.00488 0.92118 1.02174 1.20541 1.00707 0.99399 0.97025 1.20948 0.95207 0.94352 0.98112 0.92599 1.01904 0.98036 0.84854 0.91561 0.95359 0.85031 0.82993 0.89714 0.89024 0.83380 0.81735 0.82737 0.84271 0.84302 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.54 -30.96 9.32 25.60 0.24 -30.72 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.22 5.44 85.56 0.47 11.69 16 10 N -0.68 -29.97 6.48 -521.96 -3.38 -33.35 16 11 C 0.10 3.68 5.81 85.56 0.50 4.18 16 12 C -0.12 -3.63 5.39 -19.85 -0.11 -3.74 16 13 C -0.08 -2.05 9.69 22.25 0.22 -1.84 16 14 C -0.20 -4.43 9.04 22.37 0.20 -4.23 16 15 C 0.12 2.82 6.69 22.51 0.15 2.97 16 16 O -0.32 -6.78 10.12 -92.45 -0.94 -7.71 16 17 C 0.09 1.36 4.87 71.23 0.35 1.71 16 18 C -0.08 -1.09 5.51 -19.88 -0.11 -1.20 16 19 C -0.11 -1.25 9.70 22.27 0.22 -1.04 16 20 C -0.09 -0.84 10.04 22.26 0.22 -0.62 16 21 C -0.15 -1.69 10.03 22.31 0.22 -1.46 16 22 C 0.07 1.15 7.30 22.37 0.16 1.31 16 23 F -0.15 -2.74 17.27 44.97 0.78 -1.97 16 24 C -0.14 -2.19 9.68 22.31 0.22 -1.98 16 25 C -0.16 -4.00 9.99 22.36 0.22 -3.77 16 26 C -0.07 -1.91 9.69 22.25 0.22 -1.70 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 29 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 30 H 0.33 14.01 8.72 -89.70 -0.78 13.22 16 31 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 32 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 35 H 0.08 1.01 7.60 -2.39 -0.02 1.00 16 36 H 0.09 1.03 7.60 -2.38 -0.02 1.02 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -68.27 366.86 2.86 -65.41 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.25 Total: 17.41 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.84 Total: -29.90 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -3.10 Total: -89.63 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.94 Total: -7.71 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.27 2.86 -65.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754822631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.627 kcal (2) G-P(sol) polarization free energy of solvation -68.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds