Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38243 * 119.88874 * 2 1 4 4 C 1.37990 * 120.22544 * 179.74305 * 3 2 1 5 5 C 1.39621 * 120.00346 * 0.23748 * 4 3 2 6 6 C 1.47839 * 120.11002 * 180.02562 * 5 4 3 7 7 N 1.31210 * 125.72678 * 179.69311 * 6 5 4 8 8 C 1.34155 * 108.64800 * 179.87500 * 7 6 5 9 9 C 1.34549 * 107.83775 * 0.39054 * 8 7 6 10 10 O 1.34431 * 125.72363 * 0.02562 * 6 5 4 11 11 C 1.39436 * 119.78590 * 0.02562 * 5 4 3 12 12 C 1.38680 * 119.77354 * 0.02562 * 11 5 4 13 13 N 1.39698 * 120.00232 * 180.02562 * 12 11 5 14 14 C 1.46499 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.50694 * 109.47488 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00004 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.46497 * 119.99930 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47124 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00384 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00167 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47340 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47153 * 120.00150 * 23 21 19 26 26 H 1.48504 * 109.47139 * 239.99973 * 23 21 19 27 27 H 1.08998 * 109.47059 * 90.00120 * 1 2 3 28 28 H 1.09002 * 109.46617 * 209.99525 * 1 2 3 29 29 H 1.08996 * 109.47170 * 329.99407 * 1 2 3 30 30 H 1.08002 * 119.89005 * 0.02930 * 3 2 1 31 31 H 1.07996 * 119.99717 * 180.26008 * 4 3 2 32 32 H 1.08002 * 126.08457 * 180.11464 * 8 7 6 33 33 H 1.08000 * 126.36686 * 179.76734 * 9 8 7 34 34 H 1.07997 * 120.11718 * 180.02562 * 11 5 4 35 35 H 0.96998 * 120.00080 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47096 * 300.00515 * 14 13 12 37 37 H 1.09006 * 109.46896 * 60.00062 * 14 13 12 38 38 H 0.97000 * 119.99471 * 0.02562 * 17 15 14 39 39 H 1.09004 * 109.47023 * 300.00185 * 18 17 15 40 40 H 1.08998 * 109.47220 * 60.00311 * 18 17 15 41 41 H 0.96996 * 120.00537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5757 1.2067 0.0053 5 6 4.2810 0.0017 0.0058 6 6 5.7594 0.0076 0.0121 7 7 6.5298 -1.0544 0.0188 8 6 7.8106 -0.6553 0.0202 9 6 7.8230 0.6901 0.0229 10 8 6.5399 1.1022 0.0182 11 6 3.5865 -1.2074 0.0002 12 6 2.1997 -1.2050 -0.0062 13 7 1.4991 -2.4135 -0.0112 14 6 2.2292 -3.6836 -0.0103 15 6 1.2480 -4.8272 -0.0157 16 8 0.0559 -4.6035 -0.0205 17 7 1.6949 -6.0988 -0.0164 18 6 0.7409 -7.2105 -0.0223 19 6 1.4920 -8.5170 -0.0212 20 1 2.5720 -8.5190 -0.0161 21 6 0.8006 -9.7098 -0.0266 22 7 -0.5145 -9.7075 -0.0322 23 14 1.7316 -11.3292 -0.0245 24 1 3.1921 -11.0605 -0.0173 25 1 1.3653 -12.1092 1.1849 26 1 1.3776 -12.1053 -1.2401 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6523 2.1318 0.0005 31 1 4.1101 2.1451 0.0096 32 1 8.6776 -1.2993 0.0235 33 1 8.6985 1.3224 0.0281 34 1 4.1266 -2.1426 0.0010 35 1 0.5291 -2.4118 -0.0161 36 1 2.8596 -3.7409 -0.8976 37 1 2.8520 -3.7440 0.8823 38 1 2.6483 -6.2777 -0.0130 39 1 0.1108 -7.1533 0.8654 40 1 0.1179 -7.1500 -0.9146 41 1 -1.0011 -10.5466 -0.0364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759113494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = 10.019809 kcal Electronic energy + Delta-G solvation = -24437.668139 eV Core-core repulsion = 20704.954045 eV Total energy + Delta-G solvation = -3732.714093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47018 -39.95380 -38.86329 -35.50240 -35.00183 -34.27470 -33.39110 -32.41917 -30.26704 -30.03343 -28.01918 -26.96471 -26.04860 -23.17748 -22.95088 -22.54335 -21.47429 -20.87665 -19.81783 -18.49070 -17.50512 -16.81159 -16.54358 -16.30014 -15.59423 -15.42028 -15.37062 -15.26193 -14.81070 -14.36795 -14.14511 -14.08915 -13.68139 -13.40065 -13.34321 -13.11837 -12.67343 -12.42939 -12.34741 -12.02384 -11.77769 -11.55486 -11.51881 -11.29022 -11.00189 -10.94872 -10.75987 -10.39602 -10.37038 -9.60648 -9.44653 -9.29162 -8.80889 -8.45683 -8.02352 -7.43965 -6.21506 -4.28749 0.49176 1.43305 1.66192 2.41066 2.59470 3.14830 3.21337 3.24536 3.29421 3.32742 3.72854 3.76661 4.05173 4.32769 4.61250 4.72826 4.78361 4.83827 5.02843 5.15057 5.19974 5.23278 5.32621 5.41831 5.45020 5.46483 5.52299 5.55929 5.61481 5.74789 5.93672 6.01602 6.12467 6.32803 6.37809 6.62845 7.12948 7.23714 7.29544 7.43017 7.48469 7.59276 7.74786 7.90402 8.48056 8.67755 8.92945 9.37899 10.88715 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002581 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.584739 B =10845.031998 C =12777.859969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.140 4.140 3 C -0.074 4.074 4 C -0.148 4.148 5 C 0.017 3.983 6 C 0.241 3.759 7 N -0.473 5.473 8 C -0.038 4.038 9 C -0.081 4.081 10 O -0.197 6.197 11 C -0.149 4.149 12 C 0.223 3.777 13 N -0.726 5.726 14 C 0.099 3.901 15 C 0.494 3.506 16 O -0.555 6.555 17 N -0.705 5.705 18 C 0.249 3.751 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.186 0.814 33 H 0.216 0.784 34 H 0.138 0.862 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.394 0.606 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 23.695 0.077 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.145 4.145 3 C -0.093 4.093 4 C -0.170 4.170 5 C 0.015 3.985 6 C 0.038 3.962 7 N -0.202 5.202 8 C -0.178 4.178 9 C -0.151 4.151 10 O -0.084 6.084 11 C -0.173 4.173 12 C 0.118 3.882 13 N -0.359 5.359 14 C -0.029 4.029 15 C 0.278 3.722 16 O -0.434 6.434 17 N -0.353 5.353 18 C 0.129 3.871 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.203 0.797 33 H 0.233 0.767 34 H 0.156 0.844 35 H 0.255 0.745 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.227 0.773 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.719 22.893 0.081 25.718 hybrid contribution 1.211 -0.436 0.003 1.287 sum 12.930 22.456 0.084 25.913 Atomic orbital electron populations 1.20686 0.90849 1.02886 1.02465 1.19578 0.96262 0.91483 1.07188 1.20633 0.93221 0.96993 0.98453 1.20860 0.94228 0.96463 1.05454 1.16898 0.83174 0.94377 1.04073 1.23998 0.93372 0.78514 1.00309 1.70688 1.01864 1.29582 1.18063 1.23422 0.95300 0.93778 1.05287 1.25127 0.84796 0.96938 1.08272 1.84508 1.17021 1.37228 1.69617 1.20555 0.91784 0.97733 1.07261 1.17407 0.90557 0.85867 0.94361 1.44524 1.09383 1.01135 1.80892 1.21175 0.94746 0.83602 1.03387 1.20310 0.89326 0.84665 0.77893 1.90650 1.16742 1.84532 1.51501 1.46419 1.11530 1.05827 1.71512 1.19166 0.88197 0.81868 0.97904 1.21249 0.93373 0.90322 1.53308 0.91712 1.24955 0.94926 0.99537 0.94604 1.69977 1.06076 1.27360 1.48846 0.86344 0.79856 0.82846 0.77779 1.19557 1.20765 1.20770 0.91107 0.91513 0.91259 0.85377 0.85754 0.79701 0.76708 0.84388 0.74546 0.89357 0.89383 0.77298 0.95351 0.95341 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.55 36.00 0.34 -0.71 16 2 C -0.14 -1.54 5.90 -104.34 -0.62 -2.15 16 3 C -0.07 -0.71 9.67 -39.67 -0.38 -1.10 16 4 C -0.15 -1.53 9.71 -39.16 -0.38 -1.91 16 5 C 0.02 0.20 5.87 -105.01 -0.62 -0.41 16 6 C 0.24 2.98 7.90 -13.89 -0.11 2.87 16 7 N -0.47 -6.05 10.91 -11.72 -0.13 -6.18 16 8 C -0.04 -0.36 11.87 -17.84 -0.21 -0.57 16 9 C -0.08 -0.63 12.17 29.43 0.36 -0.27 16 10 O -0.20 -2.11 10.52 4.07 0.04 -2.07 16 11 C -0.15 -1.88 8.95 -38.97 -0.35 -2.23 16 12 C 0.22 2.81 6.63 -83.83 -0.56 2.25 16 13 N -0.73 -9.94 5.60 -59.84 -0.34 -10.27 16 14 C 0.10 1.37 5.39 -5.20 -0.03 1.35 16 15 C 0.49 9.28 7.90 -10.99 -0.09 9.20 16 16 O -0.55 -12.46 15.67 5.55 0.09 -12.38 16 17 N -0.70 -14.16 5.55 -61.47 -0.34 -14.51 16 18 C 0.25 6.43 5.43 -5.20 -0.03 6.40 16 19 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 20 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 23 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.08 7.90 -52.49 -0.41 0.66 16 32 H 0.19 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.22 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.14 1.74 6.50 -52.49 -0.34 1.40 16 35 H 0.41 6.01 5.42 -40.82 -0.22 5.79 16 36 H 0.09 1.09 7.95 -51.93 -0.41 0.67 16 37 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 38 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -33.22 357.23 -7.63 -40.85 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.97 Total: 9.03 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.08 Total: -0.45 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.07 Total: -55.98 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.13 Total: -14.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.22 -7.63 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759113494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds