Wall clock time and date at job start Tue Mar 31 2020 11:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38243 * 119.88874 * 2 1 4 4 C 1.37990 * 120.22544 * 179.74305 * 3 2 1 5 5 C 1.39621 * 120.00346 * 0.23748 * 4 3 2 6 6 C 1.47839 * 120.11002 * 180.02562 * 5 4 3 7 7 N 1.31210 * 125.72678 * 179.69311 * 6 5 4 8 8 C 1.34155 * 108.64800 * 179.87500 * 7 6 5 9 9 C 1.34549 * 107.83775 * 0.39054 * 8 7 6 10 10 O 1.34431 * 125.72363 * 0.02562 * 6 5 4 11 11 C 1.39436 * 119.78590 * 0.02562 * 5 4 3 12 12 C 1.38680 * 119.77354 * 0.02562 * 11 5 4 13 13 N 1.39698 * 120.00232 * 180.02562 * 12 11 5 14 14 C 1.46499 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.50694 * 109.47488 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00004 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.46497 * 119.99930 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47124 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00384 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00167 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47340 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47153 * 120.00150 * 23 21 19 26 26 H 1.48504 * 109.47139 * 239.99973 * 23 21 19 27 27 H 1.08998 * 109.47059 * 90.00120 * 1 2 3 28 28 H 1.09002 * 109.46617 * 209.99525 * 1 2 3 29 29 H 1.08996 * 109.47170 * 329.99407 * 1 2 3 30 30 H 1.08002 * 119.89005 * 0.02930 * 3 2 1 31 31 H 1.07996 * 119.99717 * 180.26008 * 4 3 2 32 32 H 1.08002 * 126.08457 * 180.11464 * 8 7 6 33 33 H 1.08000 * 126.36686 * 179.76734 * 9 8 7 34 34 H 1.07997 * 120.11718 * 180.02562 * 11 5 4 35 35 H 0.96998 * 120.00080 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47096 * 300.00515 * 14 13 12 37 37 H 1.09006 * 109.46896 * 60.00062 * 14 13 12 38 38 H 0.97000 * 119.99471 * 0.02562 * 17 15 14 39 39 H 1.09004 * 109.47023 * 300.00185 * 18 17 15 40 40 H 1.08998 * 109.47220 * 60.00311 * 18 17 15 41 41 H 0.96996 * 120.00537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5757 1.2067 0.0053 5 6 4.2810 0.0017 0.0058 6 6 5.7594 0.0076 0.0121 7 7 6.5298 -1.0544 0.0188 8 6 7.8106 -0.6553 0.0202 9 6 7.8230 0.6901 0.0229 10 8 6.5399 1.1022 0.0182 11 6 3.5865 -1.2074 0.0002 12 6 2.1997 -1.2050 -0.0062 13 7 1.4991 -2.4135 -0.0112 14 6 2.2292 -3.6836 -0.0103 15 6 1.2480 -4.8272 -0.0157 16 8 0.0559 -4.6035 -0.0205 17 7 1.6949 -6.0988 -0.0164 18 6 0.7409 -7.2105 -0.0223 19 6 1.4920 -8.5170 -0.0212 20 1 2.5720 -8.5190 -0.0161 21 6 0.8006 -9.7098 -0.0266 22 7 -0.5145 -9.7075 -0.0322 23 14 1.7316 -11.3292 -0.0245 24 1 3.1921 -11.0605 -0.0173 25 1 1.3653 -12.1092 1.1849 26 1 1.3776 -12.1053 -1.2401 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6523 2.1318 0.0005 31 1 4.1101 2.1451 0.0096 32 1 8.6776 -1.2993 0.0235 33 1 8.6985 1.3224 0.0281 34 1 4.1266 -2.1426 0.0010 35 1 0.5291 -2.4118 -0.0161 36 1 2.8596 -3.7409 -0.8976 37 1 2.8520 -3.7440 0.8823 38 1 2.6483 -6.2777 -0.0130 39 1 0.1108 -7.1533 0.8654 40 1 0.1179 -7.1500 -0.9146 41 1 -1.0011 -10.5466 -0.0364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759113494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:19 Heat of formation + Delta-G solvation = -15.042947 kcal Electronic energy + Delta-G solvation = -24438.754941 eV Core-core repulsion = 20704.954045 eV Total energy + Delta-G solvation = -3733.800896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.21380 -41.05453 -40.23683 -36.63650 -36.05399 -35.78400 -34.43653 -34.18448 -31.24548 -30.87135 -29.62326 -27.93769 -27.32073 -24.70965 -23.73316 -23.67194 -22.49320 -21.73409 -21.37247 -19.51023 -18.84400 -17.93654 -17.58392 -17.45352 -16.93221 -16.81747 -16.76597 -16.28467 -15.99806 -15.53297 -15.22063 -15.18179 -14.69757 -14.48902 -14.42885 -14.17913 -14.01606 -13.88981 -13.65506 -13.18734 -13.11214 -12.92406 -12.76507 -12.38980 -12.31926 -12.24163 -12.10073 -11.56184 -11.47898 -11.32535 -10.95854 -10.83856 -10.35693 -9.91697 -9.24867 -8.37785 -8.30968 -6.47159 -0.31497 0.59888 0.92552 1.43172 1.43677 1.57327 1.59215 1.69015 1.81525 2.05390 2.37669 2.72077 2.88359 3.04460 3.06780 3.77825 3.88379 3.97876 4.08198 4.17354 4.25579 4.31694 4.34311 4.40717 4.61461 4.65355 4.79191 4.83457 4.90452 4.97511 5.07383 5.21417 5.22522 5.27687 5.28582 5.42975 5.50824 5.56446 5.61860 5.81579 5.82299 6.22376 6.62089 6.66888 6.73742 6.81385 7.20070 7.36041 8.81344 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002581 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.584739 B =10845.031998 C =12777.859969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.145 4.145 3 C -0.068 4.068 4 C -0.144 4.144 5 C 0.004 3.996 6 C 0.216 3.784 7 N -0.503 5.503 8 C -0.064 4.064 9 C -0.059 4.059 10 O -0.204 6.204 11 C -0.161 4.161 12 C 0.207 3.793 13 N -0.736 5.736 14 C 0.117 3.883 15 C 0.495 3.505 16 O -0.594 6.594 17 N -0.701 5.701 18 C 0.266 3.734 19 C -0.556 4.556 20 H 0.084 0.916 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.984 3.016 24 H -0.253 1.253 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.210 0.790 33 H 0.264 0.736 34 H 0.131 0.869 35 H 0.408 0.592 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.411 0.589 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.673 25.260 0.092 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.151 4.151 3 C -0.087 4.087 4 C -0.165 4.165 5 C 0.002 3.998 6 C 0.013 3.987 7 N -0.232 5.232 8 C -0.203 4.203 9 C -0.129 4.129 10 O -0.090 6.090 11 C -0.185 4.185 12 C 0.103 3.897 13 N -0.370 5.370 14 C -0.011 4.011 15 C 0.281 3.719 16 O -0.476 6.476 17 N -0.350 5.350 18 C 0.143 3.857 19 C -0.593 4.593 20 H 0.102 0.898 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.807 3.193 24 H -0.177 1.177 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.178 0.822 31 H 0.160 0.840 32 H 0.227 0.773 33 H 0.279 0.721 34 H 0.149 0.851 35 H 0.248 0.752 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.248 0.752 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.564 24.512 0.096 28.512 hybrid contribution 0.415 -0.772 -0.001 0.876 sum 14.979 23.740 0.095 28.071 Atomic orbital electron populations 1.20708 0.89964 1.03245 1.02814 1.19854 0.97067 0.91456 1.06676 1.20977 0.93086 0.97661 0.96929 1.21133 0.94632 0.96573 1.04189 1.17079 0.83557 0.94797 1.04319 1.24018 0.93624 0.78969 1.02119 1.70637 1.03558 1.30552 1.18495 1.23957 0.94927 0.95167 1.06290 1.26075 0.84795 0.97151 1.04881 1.84508 1.18071 1.36931 1.69516 1.20531 0.91783 0.97942 1.08253 1.17550 0.90659 0.85879 0.95577 1.44490 1.09054 1.01355 1.82103 1.21065 0.93166 0.81633 1.05245 1.21135 0.89630 0.85157 0.75967 1.90629 1.18994 1.85138 1.52804 1.46120 1.11574 1.05268 1.72085 1.18593 0.88578 0.84108 0.94398 1.21645 0.94370 0.90525 1.52792 0.89763 1.26041 0.95764 1.03873 0.93879 1.70130 1.08153 1.28591 1.50009 0.85125 0.79125 0.77402 0.77663 1.17664 1.20480 1.20483 0.90735 0.92957 0.89064 0.82235 0.83982 0.77313 0.72078 0.85080 0.75237 0.87345 0.87385 0.75248 0.99113 0.99100 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.55 71.24 0.68 -1.30 16 2 C -0.15 -3.04 5.90 -19.68 -0.12 -3.15 16 3 C -0.07 -1.15 9.67 22.21 0.21 -0.94 16 4 C -0.14 -2.70 9.71 22.54 0.22 -2.48 16 5 C 0.00 0.10 5.87 -20.11 -0.12 -0.02 16 6 C 0.22 5.16 7.90 87.33 0.69 5.85 16 7 N -0.50 -12.53 10.91 -305.07 -3.33 -15.86 16 8 C -0.06 -1.09 11.87 83.49 0.99 -0.10 16 9 C -0.06 -0.76 12.17 66.97 0.82 0.05 16 10 O -0.20 -3.98 10.52 -8.34 -0.09 -4.07 16 11 C -0.16 -4.02 8.95 22.66 0.20 -3.82 16 12 C 0.21 5.15 6.63 38.17 0.25 5.40 16 13 N -0.74 -20.36 5.60 -343.24 -1.92 -22.28 16 14 C 0.12 3.22 5.39 85.63 0.46 3.68 16 15 C 0.49 19.07 7.90 87.65 0.69 19.76 16 16 O -0.59 -27.95 15.67 -3.05 -0.05 -28.00 16 17 N -0.70 -28.77 5.55 -466.78 -2.59 -31.36 16 18 C 0.27 14.34 5.43 85.63 0.46 14.81 16 19 C -0.56 -29.87 9.28 25.60 0.24 -29.63 16 20 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.69 13.29 21.44 0.28 -55.40 16 23 Si 0.98 42.14 29.54 68.60 2.03 44.17 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.10 6.55 -2.39 -0.02 1.08 16 29 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.14 2.11 7.90 -2.91 -0.02 2.08 16 32 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.26 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.13 3.33 6.50 -2.91 -0.02 3.32 16 35 H 0.41 12.26 5.42 -92.71 -0.50 11.76 16 36 H 0.11 2.58 7.95 -2.39 -0.02 2.56 16 37 H 0.11 2.57 7.95 -2.38 -0.02 2.55 16 38 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 39 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -75.51 357.23 0.30 -75.22 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.19 Total: 28.80 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.15 Total: 8.79 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -7.56 Total: -124.90 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.14 Total: -32.07 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.51 0.30 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759113494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.173 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds