Wall clock time and date at job start Tue Mar 31 2020 11:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 120.00253 * 2 1 4 4 C 1.38235 * 120.00164 * 180.29859 * 3 2 1 5 5 C 1.38237 * 119.99807 * 359.69326 * 4 3 2 6 6 C 1.38232 * 119.99877 * 0.02742 * 5 4 3 7 7 C 1.50703 * 120.00189 * 179.97438 * 6 5 4 8 8 C 1.38236 * 119.99690 * 179.74033 * 2 1 3 9 9 C 1.50694 * 120.00361 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.46915 * 269.72799 * 9 8 2 11 11 C 1.39925 * 120.00014 * 179.97438 * 10 9 8 12 12 C 1.38721 * 120.07888 * 359.72667 * 11 10 9 13 13 C 1.38216 * 120.01700 * 179.69635 * 12 11 10 14 14 C 1.38525 * 120.17757 * 0.59971 * 13 12 11 15 15 F 1.35096 * 119.92361 * 179.69597 * 14 13 12 16 16 C 1.38353 * 120.15772 * 359.67842 * 14 13 12 17 17 C 1.38728 * 119.98201 * 0.02562 * 16 14 13 18 18 O 1.35797 * 120.08942 * 180.02562 * 17 16 14 19 19 C 1.34802 * 116.99781 * 354.39978 * 18 17 16 20 20 H 1.08003 * 120.00248 * 5.06225 * 19 18 17 21 21 C 1.38630 * 119.99795 * 185.06348 * 19 18 17 22 22 N 1.31574 * 119.99879 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46708 * 120.00100 * 23 21 19 26 26 H 1.48502 * 109.47046 * 239.99697 * 23 21 19 27 27 H 1.09003 * 109.46820 * 270.26126 * 1 2 3 28 28 H 1.09007 * 109.46854 * 30.25626 * 1 2 3 29 29 H 1.08994 * 109.47074 * 150.26147 * 1 2 3 30 30 H 1.08001 * 119.99730 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.00101 * 179.72494 * 4 3 2 32 32 H 1.07996 * 120.00212 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47290 * 270.02710 * 7 6 5 34 34 H 1.09007 * 109.46885 * 30.01891 * 7 6 5 35 35 H 1.08995 * 109.47662 * 150.02204 * 7 6 5 36 36 H 1.08998 * 109.46737 * 29.72474 * 9 8 2 37 37 H 1.08992 * 109.47418 * 149.73046 * 9 8 2 38 38 H 0.97003 * 120.00623 * 0.02562 * 10 9 8 39 39 H 1.08005 * 119.98905 * 359.97327 * 12 11 10 40 40 H 1.08001 * 119.91291 * 180.27605 * 13 12 11 41 41 H 1.08002 * 120.00889 * 180.02562 * 16 14 13 42 42 H 0.97006 * 119.99647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0062 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1972 -0.0002 7 6 4.3339 -2.5024 -0.0006 8 6 2.1981 -1.1972 0.0054 9 6 1.4447 -2.5022 0.0108 10 7 1.2057 -2.9224 1.3937 11 6 0.5183 -4.1130 1.6543 12 6 0.0575 -4.8939 0.6044 13 6 -0.6158 -6.0729 0.8633 14 6 -0.8435 -6.4723 2.1700 15 9 -1.5075 -7.6226 2.4171 16 6 -0.3922 -5.6962 3.2227 17 6 0.2897 -4.5147 2.9704 18 8 0.7341 -3.7516 4.0020 19 6 0.3805 -4.1364 5.2446 20 1 -0.1598 -5.0601 5.3907 21 6 0.7103 -3.3465 6.3351 22 7 1.3690 -2.2214 6.1572 23 14 0.2197 -3.8794 8.0569 24 1 -0.5068 -5.1726 7.9866 25 1 1.4377 -4.0410 8.8909 26 1 -0.6613 -2.8484 8.6620 27 1 -0.3633 0.0047 1.0277 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 1.6582 2.1324 0.0004 31 1 4.1206 2.1324 -0.0107 32 1 5.3517 -0.0002 -0.0105 33 1 4.5114 -2.8192 -1.0284 34 1 5.2885 -2.3710 0.5090 35 1 3.7470 -3.2609 0.5172 36 1 0.4904 -2.3728 -0.4997 37 1 2.0318 -3.2629 -0.5037 38 1 1.5232 -2.3750 2.1288 39 1 0.2289 -4.5827 -0.4155 40 1 -0.9699 -6.6818 0.0446 41 1 -0.5707 -6.0101 4.2405 42 1 1.6001 -1.6689 6.9203 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760463783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:34 Heat of formation + Delta-G solvation = -27.444568 kcal Electronic energy + Delta-G solvation = -25699.152631 eV Core-core repulsion = 21944.893999 eV Total energy + Delta-G solvation = -3754.258632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.04228 -39.89439 -39.03979 -36.58693 -34.89855 -33.53119 -32.33470 -31.98937 -29.25580 -28.58986 -27.04220 -26.58942 -25.38230 -24.99168 -21.98784 -21.13435 -20.63763 -20.42700 -18.17054 -17.62577 -16.46176 -16.05502 -15.96825 -15.55354 -15.13595 -14.82279 -14.50448 -14.25651 -14.17444 -13.74932 -13.64901 -13.42936 -13.15638 -13.11194 -12.97665 -12.88795 -12.58173 -12.51115 -12.09465 -11.93290 -11.74617 -11.55645 -11.39303 -11.25799 -10.97500 -10.74798 -10.69703 -10.51314 -10.38872 -9.57855 -9.21631 -8.85609 -8.61874 -8.47374 -7.73572 -6.48196 -6.42714 -4.02917 1.34507 1.43630 2.12778 2.24545 3.11585 3.14143 3.19368 3.66302 3.94214 4.30534 4.47441 4.76162 4.83989 4.95482 4.98087 5.01470 5.09078 5.26785 5.29299 5.35209 5.51574 5.58052 5.61817 5.67376 5.70257 5.77274 5.83730 5.86868 5.94043 6.00405 6.12291 6.23327 6.32513 6.43914 6.53200 6.58163 6.60298 6.76162 6.82226 7.03313 7.07630 7.11234 7.25960 7.62752 7.92670 8.04685 8.43123 8.98691 9.64978 10.69856 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009961 B = 0.004637 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.343609 B = 6036.693673 C = 7911.687511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.109 4.109 5 C -0.133 4.133 6 C -0.059 4.059 7 C -0.122 4.122 8 C -0.103 4.103 9 C 0.170 3.830 10 N -0.738 5.738 11 C 0.155 3.845 12 C -0.147 4.147 13 C -0.195 4.195 14 C 0.085 3.915 15 F -0.158 7.158 16 C -0.241 4.241 17 C 0.122 3.878 18 O -0.175 6.175 19 C -0.386 4.386 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.939 3.061 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 3.918 -12.963 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.127 4.127 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.178 4.178 8 C -0.104 4.104 9 C 0.046 3.954 10 N -0.372 5.372 11 C 0.053 3.947 12 C -0.171 4.171 13 C -0.215 4.215 14 C 0.064 3.936 15 F -0.137 7.137 16 C -0.263 4.263 17 C 0.066 3.934 18 O -0.080 6.080 19 C -0.462 4.462 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.764 3.236 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.743 4.286 -12.974 13.936 hybrid contribution -0.218 -0.203 1.281 1.315 sum 2.525 4.083 -11.692 12.640 Atomic orbital electron populations 1.20898 0.91100 1.02501 1.03131 1.19800 0.96132 0.92468 0.97530 1.20970 0.94246 0.97364 1.02448 1.21091 0.94303 0.97834 0.99452 1.20974 0.99612 0.92002 1.02469 1.19799 0.93035 0.95522 0.97583 1.20895 1.00126 0.94701 1.02107 1.19601 0.93059 0.94457 1.03244 1.20064 0.98044 0.91950 0.85362 1.44334 1.63683 1.23365 1.05828 1.17099 0.98444 0.88850 0.90268 1.19915 1.04717 0.95837 0.96673 1.20282 1.07536 0.99467 0.94237 1.17229 0.98800 0.83875 0.93650 1.91375 1.79041 1.47928 1.95364 1.20788 1.08713 0.97470 0.99301 1.18597 0.95742 0.91286 0.87736 1.83900 1.63946 1.46954 1.13161 1.21331 1.37593 1.07529 0.79747 0.89081 1.25239 0.96572 0.95192 0.99415 1.70040 1.36332 1.11738 1.31571 0.85666 0.78505 0.78827 0.80603 1.19052 1.20191 1.20178 0.90469 0.91869 0.91006 0.86237 0.86288 0.86246 0.91284 0.91556 0.90371 0.91976 0.92149 0.75397 0.86232 0.86603 0.84503 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.60 36.01 0.35 -1.11 16 2 C -0.06 -0.79 5.88 -104.62 -0.62 -1.40 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.02 16 4 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.13 -1.63 9.70 -39.58 -0.38 -2.02 16 6 C -0.06 -0.79 5.88 -104.62 -0.62 -1.40 16 7 C -0.12 -1.47 9.19 36.01 0.33 -1.14 16 8 C -0.10 -1.45 5.25 -104.63 -0.55 -1.99 16 9 C 0.17 2.41 3.83 -5.20 -0.02 2.39 16 10 N -0.74 -13.27 5.68 -59.64 -0.34 -13.61 16 11 C 0.15 3.08 6.67 -83.52 -0.56 2.52 16 12 C -0.15 -2.56 9.31 -39.41 -0.37 -2.93 16 13 C -0.19 -3.49 10.02 -39.48 -0.40 -3.89 16 14 C 0.09 1.73 7.29 -39.43 -0.29 1.44 16 15 F -0.16 -3.13 17.26 2.25 0.04 -3.09 16 16 C -0.24 -5.41 9.14 -39.36 -0.36 -5.77 16 17 C 0.12 2.85 6.67 -38.93 -0.26 2.59 16 18 O -0.18 -4.73 9.00 -0.02 0.00 -4.73 16 19 C -0.39 -10.53 9.49 30.88 0.29 -10.24 16 20 H 0.09 2.36 5.21 -52.48 -0.27 2.09 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 23 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 29 H 0.07 0.84 5.94 -51.93 -0.31 0.53 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 8.09 -51.92 -0.42 0.32 16 35 H 0.08 1.07 6.66 -51.93 -0.35 0.73 16 36 H 0.06 0.82 5.74 -51.93 -0.30 0.53 16 37 H 0.06 0.80 6.52 -51.93 -0.34 0.46 16 38 H 0.41 8.41 7.83 -40.82 -0.32 8.09 16 39 H 0.12 1.72 6.73 -52.48 -0.35 1.37 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -29.26 352.93 -8.61 -37.87 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.04 Total: 12.20 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -4.32 Total: -25.66 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.42 Total: -37.33 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.26 -8.61 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760463783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.425 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds